Wall clock time and date at job start Tue Mar 31 2020 17:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 110.28875 * 2 1 4 4 C 1.53999 * 110.32819 * 237.86564 * 2 1 3 5 5 N 1.47486 * 107.08212 * 242.31037 * 4 2 1 6 6 C 1.34775 * 127.03392 * 154.51480 * 5 4 2 7 7 O 1.21279 * 120.00095 * 184.77294 * 6 5 4 8 8 C 1.50699 * 120.00273 * 5.04971 * 6 5 4 9 9 H 1.09003 * 109.47112 * 24.71983 * 8 6 5 10 10 C 1.53005 * 109.47146 * 264.72542 * 8 6 5 11 11 C 1.52999 * 109.46893 * 179.97438 * 10 8 6 12 12 C 1.52992 * 109.47759 * 59.99737 * 11 10 8 13 13 C 1.53005 * 109.47132 * 300.00116 * 12 11 10 14 14 C 1.52998 * 109.47663 * 144.71817 * 8 6 5 15 15 F 1.39894 * 109.47126 * 300.00635 * 14 8 6 16 16 F 1.39907 * 109.46894 * 60.00237 * 14 8 6 17 17 C 1.48113 * 105.93323 * 334.77748 * 5 4 2 18 18 C 1.54596 * 103.42313 * 39.02170 * 17 5 4 19 19 H 1.09001 * 110.57137 * 81.17427 * 18 17 5 20 20 C 1.52998 * 110.83514 * 204.44738 * 18 17 5 21 21 N 1.46505 * 109.47047 * 288.56319 * 20 18 17 22 22 C 1.36942 * 119.99901 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99850 * 359.97438 * 22 21 20 24 24 C 1.38806 * 119.99784 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00422 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99757 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46987 * 90.00091 * 26 24 22 28 28 H 1.48507 * 109.47110 * 209.99772 * 26 24 22 29 29 H 1.48500 * 109.47084 * 329.99748 * 26 24 22 30 30 H 1.08999 * 109.46729 * 180.68815 * 1 2 3 31 31 H 1.08997 * 109.46800 * 300.68017 * 1 2 3 32 32 H 1.09000 * 109.46801 * 60.68242 * 1 2 3 33 33 H 1.08995 * 109.91599 * 122.95008 * 4 2 1 34 34 H 1.08999 * 110.07399 * 1.75623 * 4 2 1 35 35 H 1.09000 * 109.46911 * 299.99269 * 10 8 6 36 36 H 1.08997 * 109.47286 * 59.99799 * 10 8 6 37 37 H 1.09003 * 109.47339 * 299.99425 * 11 10 8 38 38 H 1.08999 * 109.47020 * 179.97438 * 11 10 8 39 39 H 1.08994 * 109.47995 * 179.97438 * 12 11 10 40 40 H 1.09003 * 109.46950 * 59.99449 * 12 11 10 41 41 H 1.09000 * 109.46911 * 299.99962 * 13 12 11 42 42 H 1.08997 * 109.47286 * 179.97438 * 13 12 11 43 43 H 1.09002 * 110.66493 * 157.51241 * 17 5 4 44 44 H 1.09006 * 110.66174 * 280.62346 * 17 5 4 45 45 H 1.08996 * 109.47200 * 48.56064 * 20 18 17 46 46 H 1.08998 * 109.47495 * 168.56672 * 20 18 17 47 47 H 0.97000 * 119.99880 * 0.02562 * 21 20 18 48 48 H 0.97003 * 120.00384 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0651 -0.7681 -1.2228 5 7 2.8299 -1.9203 -0.7101 6 6 3.0646 -3.0859 -1.3446 7 8 3.6394 -3.9850 -0.7684 8 6 2.6184 -3.2699 -2.7723 9 1 2.5416 -2.2968 -3.2572 10 6 1.2531 -3.9602 -2.7949 11 6 0.7999 -4.1464 -4.2443 12 6 1.8197 -5.0086 -4.9909 13 6 3.1850 -4.3183 -4.9683 14 6 3.6384 -4.1323 -3.5184 15 9 4.8867 -3.5011 -3.4976 16 9 3.7371 -5.3814 -2.8960 17 6 3.2817 -1.5367 0.6473 18 6 2.0694 -0.7719 1.2263 19 1 1.3211 -1.4691 1.6032 20 6 2.5114 0.1969 2.3249 21 7 2.9044 -0.5611 3.5154 22 6 3.3385 0.0981 4.6345 23 1 3.3915 1.1768 4.6392 24 6 3.7113 -0.6202 5.7622 25 7 3.6471 -1.9348 5.7562 26 14 4.3041 0.2790 7.2885 27 1 3.1454 0.5793 8.1674 28 1 5.2729 -0.5752 8.0213 29 1 4.9652 1.5477 6.8901 30 1 -0.3633 -1.0276 0.0123 31 1 -0.3633 0.5244 0.8838 32 1 -0.3633 0.5032 -0.8961 33 1 2.7167 -0.1221 -1.8111 34 1 1.2355 -1.1172 -1.8376 35 1 1.3300 -4.9334 -2.3101 36 1 0.5264 -3.3458 -2.2635 37 1 0.7229 -3.1731 -4.7289 38 1 -0.1725 -4.6386 -4.2605 39 1 1.4966 -5.1416 -6.0234 40 1 1.8966 -5.9819 -4.5064 41 1 3.1080 -3.3449 -5.4528 42 1 3.9116 -4.9327 -5.4998 43 1 3.4982 -2.4221 1.2451 44 1 4.1542 -0.8856 0.5925 45 1 3.3591 0.7842 1.9720 46 1 1.6863 0.8638 2.5749 47 1 2.8570 -1.5300 3.5109 48 1 3.9073 -2.4367 6.5445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106473640.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:38 Heat of formation + Delta-G solvation = -164.389287 kcal Electronic energy + Delta-G solvation = -29946.046820 eV Core-core repulsion = 25669.950158 eV Total energy + Delta-G solvation = -4276.096661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.01175 -48.00757 -41.42335 -39.42330 -38.16111 -36.48223 -34.27429 -33.06603 -32.55317 -31.06452 -30.53784 -27.45403 -27.19076 -25.32855 -24.33913 -23.73840 -22.56120 -21.19006 -21.10628 -20.46653 -19.16309 -18.41622 -18.35526 -17.79892 -17.22428 -17.12242 -16.54771 -16.27788 -15.85523 -15.51467 -15.21587 -15.14499 -14.92883 -14.84599 -14.75312 -14.34286 -14.30487 -14.23344 -13.97079 -13.66153 -13.61494 -13.38696 -13.23319 -13.12365 -12.91209 -12.75642 -12.70256 -12.49400 -12.38869 -12.15052 -11.97012 -11.90671 -11.75528 -11.60927 -11.53872 -11.45197 -11.36152 -10.96343 -10.78801 -9.79610 -9.02532 -7.96402 -5.26385 1.36853 1.45050 1.47736 1.56134 1.74339 2.54374 2.67614 2.95061 3.16698 3.28911 3.37126 3.50948 3.57520 3.78511 3.80248 3.90410 3.98078 4.07284 4.16959 4.20189 4.22502 4.27701 4.36733 4.50133 4.53407 4.55039 4.65393 4.71066 4.77705 4.83738 4.86046 4.86915 4.97973 5.01341 5.04700 5.06550 5.17471 5.21093 5.24375 5.24970 5.36205 5.42906 5.47473 5.54648 6.24759 6.43587 6.96734 7.30479 8.06828 8.28327 9.27364 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.019231 B = 0.002813 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.603338 B = 9952.632451 C =10736.225907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 H 0.104 0.896 4 C 0.099 3.901 5 N -0.617 5.617 6 C 0.520 3.480 7 O -0.584 6.584 8 C -0.134 4.134 9 H 0.154 0.846 10 C -0.108 4.108 11 C -0.113 4.113 12 C -0.122 4.122 13 C -0.147 4.147 14 C 0.286 3.714 15 F -0.219 7.219 16 F -0.209 7.209 17 C 0.115 3.885 18 C -0.091 4.091 19 H 0.065 0.935 20 C 0.165 3.835 21 N -0.750 5.750 22 C -0.243 4.243 23 H 0.081 0.919 24 C -0.081 4.081 25 N -0.973 5.973 26 Si 0.976 3.024 27 H -0.285 1.285 28 H -0.299 1.299 29 H -0.266 1.266 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.054 0.946 41 H 0.126 0.874 42 H 0.092 0.908 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.027 0.973 46 H 0.034 0.966 47 H 0.370 0.630 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.368 1.932 -30.573 32.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.122 0.878 4 C -0.022 4.022 5 N -0.349 5.349 6 C 0.310 3.690 7 O -0.463 6.463 8 C -0.156 4.156 9 H 0.171 0.829 10 C -0.146 4.146 11 C -0.150 4.150 12 C -0.159 4.159 13 C -0.185 4.185 14 C 0.249 3.751 15 F -0.200 7.200 16 F -0.191 7.191 17 C -0.008 4.008 18 C -0.111 4.111 19 H 0.083 0.917 20 C 0.038 3.962 21 N -0.392 5.392 22 C -0.375 4.375 23 H 0.099 0.901 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.805 3.195 27 H -0.211 1.211 28 H -0.226 1.226 29 H -0.191 1.191 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.127 0.873 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.073 0.927 41 H 0.144 0.856 42 H 0.111 0.889 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.045 0.955 46 H 0.052 0.948 47 H 0.201 0.799 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.965 1.535 -30.232 31.869 hybrid contribution 1.201 -0.605 2.046 2.449 sum -8.763 0.930 -28.186 29.531 Atomic orbital electron populations 1.21826 0.92397 1.02028 1.03218 1.22099 0.97682 0.99863 0.91269 0.87758 1.22613 0.96466 0.86256 0.96898 1.48928 1.53359 1.15358 1.17266 1.20735 0.78744 0.80409 0.89148 1.90775 1.44487 1.42034 1.69040 1.22497 0.98132 1.03866 0.91097 0.82865 1.21569 0.91732 1.00427 1.00862 1.21630 0.99267 1.02331 0.91750 1.21614 0.92288 0.98688 1.03334 1.22628 1.00337 1.06236 0.89311 1.21534 0.79816 0.77372 0.96337 1.92981 1.46673 1.82714 1.97618 1.93001 1.96366 1.44287 1.85396 1.22279 0.97608 0.98170 0.82743 1.22326 0.96008 0.97201 0.95590 0.91659 1.20809 0.96791 0.93156 0.85429 1.42665 1.79277 1.05670 1.11575 1.19674 1.34411 0.91855 0.91561 0.90114 1.25651 1.03595 0.96245 1.01765 1.69850 1.56277 1.06293 1.30015 0.85098 0.77484 0.77566 0.79361 1.21147 1.22575 1.19066 0.93137 0.92889 0.89180 0.88790 0.87270 0.93064 0.88655 0.88135 0.89057 0.87297 0.92674 0.85591 0.88923 0.94151 0.91088 0.95469 0.94836 0.79891 0.94135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.90 71.98 0.64 -1.49 16 2 C -0.09 -1.74 3.17 -9.90 -0.03 -1.77 16 3 H 0.10 1.77 7.85 -2.39 -0.02 1.75 16 4 C 0.10 1.63 5.94 86.53 0.51 2.14 16 5 N -0.62 -17.31 3.29 -810.10 -2.67 -19.98 16 6 C 0.52 16.41 6.62 87.66 0.58 16.99 16 7 O -0.58 -25.67 15.56 -3.03 -0.05 -25.72 16 8 C -0.13 -2.63 1.67 -11.54 -0.02 -2.65 16 9 H 0.15 1.72 7.19 -2.39 -0.02 1.70 16 10 C -0.11 -1.61 5.06 30.60 0.15 -1.45 16 11 C -0.11 -0.76 5.92 30.59 0.18 -0.58 16 12 C -0.12 -1.04 5.80 30.59 0.18 -0.86 16 13 C -0.15 -1.71 5.46 30.61 0.17 -1.54 16 14 C 0.29 6.53 1.51 30.61 0.05 6.58 16 15 F -0.22 -6.20 16.77 44.97 0.75 -5.45 16 16 F -0.21 -6.62 14.62 44.97 0.66 -5.97 16 17 C 0.11 4.07 6.45 86.61 0.56 4.63 16 18 C -0.09 -2.88 2.61 -9.70 -0.03 -2.90 16 19 H 0.06 2.30 7.86 -2.39 -0.02 2.28 16 20 C 0.16 6.37 5.58 86.38 0.48 6.85 16 21 N -0.75 -39.21 5.52 -343.45 -1.90 -41.10 16 22 C -0.24 -13.87 9.99 84.03 0.84 -13.03 16 23 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 24 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 25 N -0.97 -62.54 13.06 21.65 0.28 -62.26 16 26 Si 0.98 47.40 29.55 68.60 2.03 49.43 16 27 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 28 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 29 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 34 H 0.11 1.07 7.13 -2.39 -0.02 1.05 16 35 H 0.05 1.10 7.80 -2.39 -0.02 1.08 16 36 H 0.09 1.15 8.06 -2.39 -0.02 1.14 16 37 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.05 0.71 7.80 -2.39 -0.02 0.70 16 41 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.04 1.80 7.82 -2.39 -0.02 1.78 16 44 H 0.07 2.53 7.93 -2.38 -0.02 2.51 16 45 H 0.03 1.04 7.99 -2.39 -0.02 1.02 16 46 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.37 21.23 7.67 -92.71 -0.71 20.52 16 48 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -84.48 382.54 4.08 -80.40 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.24 Total: 24.05 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 4.73 Total: 6.59 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -4.28 Total: -123.34 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 9 Polarization: -12.83 SS G_CDS: 1.41 Total: -11.42 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -84.48 4.08 -80.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106473640.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.991 kcal (2) G-P(sol) polarization free energy of solvation -84.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds