Wall clock time and date at job start Tue Mar 31 2020 17:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 110.80053 * 2 1 4 4 C 1.54938 * 110.74182 * 236.70737 * 2 1 3 5 5 N 1.48389 * 103.37520 * 204.38696 * 4 2 1 6 6 C 1.34780 * 127.16961 * 219.23597 * 5 4 2 7 7 O 1.21284 * 119.99909 * 174.99452 * 6 5 4 8 8 C 1.50708 * 119.99922 * 354.99400 * 6 5 4 9 9 C 1.52994 * 110.43137 * 297.14444 * 8 6 5 10 10 F 1.39895 * 109.47506 * 306.09630 * 9 8 6 11 11 F 1.39897 * 109.47639 * 66.10072 * 9 8 6 12 12 C 1.54887 * 110.47951 * 174.46134 * 8 6 5 13 13 C 1.54889 * 102.75006 * 279.26321 * 12 8 6 14 14 C 1.54271 * 104.19247 * 322.06183 * 13 12 8 15 15 C 1.53868 * 106.60260 * 23.60878 * 14 13 12 16 16 C 1.47483 * 105.79380 * 39.06677 * 5 4 2 17 17 C 1.54000 * 107.24713 * 334.78147 * 16 5 4 18 18 H 1.09005 * 110.32521 * 120.20639 * 17 16 5 19 19 C 1.52996 * 110.32746 * 242.31913 * 17 16 5 20 20 N 1.46505 * 109.46749 * 293.54650 * 19 17 16 21 21 C 1.36947 * 119.99536 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00000 * 0.02562 * 21 20 19 23 23 C 1.38815 * 119.99537 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00105 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99799 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47181 * 59.99585 * 25 23 21 27 27 H 1.48494 * 109.47028 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47010 * 300.00083 * 25 23 21 29 29 H 1.09003 * 109.47137 * 296.70751 * 1 2 3 30 30 H 1.08996 * 109.47445 * 56.71364 * 1 2 3 31 31 H 1.09003 * 109.47297 * 176.70852 * 1 2 3 32 32 H 1.08997 * 110.66560 * 322.72878 * 4 2 1 33 33 H 1.09003 * 110.66481 * 85.84306 * 4 2 1 34 34 H 1.09008 * 109.46662 * 186.09923 * 9 8 6 35 35 H 1.08994 * 110.76266 * 37.58005 * 12 8 6 36 36 H 1.09002 * 110.75191 * 160.95021 * 12 8 6 37 37 H 1.09005 * 110.48552 * 203.39066 * 13 12 8 38 38 H 1.08989 * 110.48879 * 80.74063 * 13 12 8 39 39 H 1.09004 * 110.02906 * 264.32390 * 14 13 12 40 40 H 1.08998 * 110.02629 * 142.89935 * 14 13 12 41 41 H 1.08998 * 110.03783 * 240.71512 * 15 14 13 42 42 H 1.09002 * 110.03218 * 119.27951 * 15 14 13 43 43 H 1.09001 * 109.91183 * 215.32391 * 16 5 4 44 44 H 1.09004 * 109.90960 * 94.24234 * 16 5 4 45 45 H 1.08993 * 109.47366 * 53.54461 * 19 17 16 46 46 H 1.09003 * 109.47577 * 173.55266 * 19 17 16 47 47 H 0.96995 * 120.00600 * 0.02562 * 20 19 17 48 48 H 0.97003 * 119.99995 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0787 -0.7954 -1.2112 5 7 3.4298 -1.2142 -0.7631 6 6 4.5564 -1.2555 -1.5019 7 8 5.6146 -1.5340 -0.9789 8 6 4.5009 -0.9556 -2.9778 9 6 3.6313 -1.9865 -3.7000 10 9 4.0894 -3.2742 -3.4015 11 9 2.3039 -1.8544 -3.2782 12 6 5.9280 -0.9291 -3.5793 13 6 6.4325 0.4855 -3.2003 14 6 5.1900 1.3858 -3.3608 15 6 3.9620 0.4696 -3.2192 16 6 3.2875 -1.5728 0.6604 17 6 2.0775 -0.7936 1.2087 18 1 1.3218 -1.4834 1.5846 19 6 2.5199 0.1640 2.3169 20 7 2.9886 -0.6077 3.4707 21 6 3.4377 0.0399 4.5907 22 1 3.4460 1.1193 4.6235 23 6 3.8823 -0.6913 5.6837 24 7 3.8727 -2.0067 5.6435 25 14 4.4943 0.1920 7.2118 26 1 3.4056 1.0373 7.7643 27 1 4.9100 -0.8076 8.2281 28 1 5.6544 1.0485 6.8571 29 1 -0.3633 0.4619 0.9180 30 1 -0.3634 0.5640 -0.8590 31 1 -0.3634 -1.0260 -0.0590 32 1 1.4559 -1.6668 -1.4131 33 1 2.1458 -0.1569 -2.0921 34 1 3.6889 -1.8206 -4.7758 35 1 6.5534 -1.6970 -3.1243 36 1 5.8929 -1.0494 -4.6621 37 1 7.2238 0.8029 -3.8795 38 1 6.7844 0.5013 -2.1690 39 1 5.1940 1.8556 -4.3443 40 1 5.1787 2.1485 -2.5822 41 1 3.3698 0.4948 -4.1340 42 1 3.3546 0.7876 -2.3719 43 1 4.1883 -1.2916 1.2060 44 1 3.1140 -2.6445 0.7577 45 1 3.3285 0.7959 1.9498 46 1 1.6777 0.7883 2.6153 47 1 2.9815 -1.5772 3.4411 48 1 4.1830 -2.5176 6.4074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106575973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:02 Heat of formation + Delta-G solvation = -145.695065 kcal Electronic energy + Delta-G solvation = -30786.926130 eV Core-core repulsion = 26511.640111 eV Total energy + Delta-G solvation = -4275.286019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.08219 -48.07512 -41.68979 -39.70493 -38.02967 -36.49764 -34.27587 -33.11664 -31.87381 -30.68370 -29.67619 -27.44124 -27.28298 -25.70044 -25.20856 -23.38233 -22.26435 -21.53578 -20.97702 -19.94087 -19.17556 -18.81350 -18.31437 -18.03272 -17.43834 -17.07766 -16.72800 -16.48579 -15.94584 -15.60951 -15.32804 -15.27711 -14.98452 -14.86821 -14.60380 -14.43087 -14.29482 -14.18455 -13.88570 -13.61246 -13.33076 -13.27563 -13.04590 -12.91665 -12.76764 -12.57310 -12.53458 -12.37208 -12.24071 -12.14950 -12.03068 -11.97102 -11.86283 -11.68972 -11.52881 -11.40079 -11.19941 -10.98259 -10.82432 -9.78937 -9.05190 -7.98682 -5.28435 1.38831 1.42908 1.47145 1.53191 1.78306 2.52564 2.70884 3.01550 3.15019 3.20203 3.34328 3.48382 3.52391 3.71750 3.75205 3.95283 3.99081 4.13575 4.18745 4.21661 4.36756 4.40724 4.43304 4.44030 4.50496 4.54027 4.62486 4.69884 4.72721 4.82101 4.85056 4.93524 4.95022 4.98704 5.02657 5.07490 5.18231 5.19449 5.23597 5.27481 5.35008 5.43682 5.43802 5.54139 6.22822 6.46833 6.98988 7.28914 8.03903 8.27270 9.24771 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015091 B = 0.003446 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.983163 B = 8124.011106 C = 8696.232971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.095 4.095 3 H 0.084 0.916 4 C 0.099 3.901 5 N -0.615 5.615 6 C 0.530 3.470 7 O -0.582 6.582 8 C -0.132 4.132 9 C 0.271 3.729 10 F -0.221 7.221 11 F -0.198 7.198 12 C -0.098 4.098 13 C -0.126 4.126 14 C -0.119 4.119 15 C -0.115 4.115 16 C 0.116 3.884 17 C -0.091 4.091 18 H 0.087 0.913 19 C 0.166 3.834 20 N -0.746 5.746 21 C -0.251 4.251 22 H 0.075 0.925 23 C -0.075 4.075 24 N -0.970 5.970 25 Si 0.976 3.024 26 H -0.272 1.272 27 H -0.293 1.293 28 H -0.281 1.281 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.179 0.821 35 H 0.055 0.945 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.030 0.970 39 H 0.105 0.895 40 H 0.055 0.945 41 H 0.126 0.874 42 H 0.076 0.924 43 H 0.040 0.960 44 H 0.053 0.947 45 H 0.006 0.994 46 H 0.032 0.968 47 H 0.373 0.627 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.869 6.257 -29.636 30.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.115 4.115 3 H 0.102 0.898 4 C -0.022 4.022 5 N -0.347 5.347 6 C 0.319 3.681 7 O -0.462 6.462 8 C -0.136 4.136 9 C 0.217 3.783 10 F -0.203 7.203 11 F -0.179 7.179 12 C -0.135 4.135 13 C -0.164 4.164 14 C -0.156 4.156 15 C -0.153 4.153 16 C -0.008 4.008 17 C -0.111 4.111 18 H 0.106 0.894 19 C 0.040 3.960 20 N -0.388 5.388 21 C -0.382 4.382 22 H 0.093 0.907 23 C -0.267 4.267 24 N -0.620 5.620 25 Si 0.804 3.196 26 H -0.198 1.198 27 H -0.220 1.220 28 H -0.207 1.207 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.140 0.860 34 H 0.196 0.804 35 H 0.073 0.927 36 H 0.142 0.858 37 H 0.112 0.888 38 H 0.049 0.951 39 H 0.123 0.877 40 H 0.074 0.926 41 H 0.144 0.856 42 H 0.094 0.906 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.024 0.976 46 H 0.050 0.950 47 H 0.205 0.795 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.221 6.227 -29.291 30.397 hybrid contribution 0.823 -0.657 2.084 2.335 sum -4.397 5.570 -27.207 28.117 Atomic orbital electron populations 1.21696 0.91489 1.02872 1.03028 1.22388 0.97890 0.99016 0.92205 0.89751 1.23561 0.80859 0.99698 0.98039 1.48934 1.09774 1.65107 1.10917 1.20511 0.81868 0.76289 0.89392 1.90696 1.30717 1.50557 1.74205 1.22943 1.00969 0.99475 0.90212 1.22485 0.76027 0.77851 1.01899 1.92992 1.89031 1.42692 1.95536 1.92996 1.37245 1.95428 1.92226 1.22472 0.90575 0.98412 1.02065 1.22347 0.99066 0.94333 1.00649 1.22154 0.92452 0.97321 1.03707 1.22520 0.99204 0.88502 1.05035 1.21896 0.98833 0.98431 0.81606 1.22253 0.95771 0.97484 0.95568 0.89423 1.20804 0.95549 0.93236 0.86458 1.42587 1.77159 1.05516 1.13567 1.19604 1.33928 0.91669 0.93045 0.90738 1.25609 1.03069 0.96224 1.01785 1.69819 1.54723 1.05695 1.31782 0.85185 0.78354 0.77131 0.78940 1.19789 1.21953 1.20728 0.92577 0.89667 0.91960 0.89304 0.86023 0.80433 0.92664 0.85796 0.88808 0.95088 0.87678 0.92603 0.85569 0.90588 0.94112 0.92837 0.97642 0.94967 0.79539 0.93955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.16 71.98 0.66 -1.65 16 2 C -0.10 -2.19 3.21 -9.58 -0.03 -2.22 16 3 H 0.08 1.93 7.86 -2.38 -0.02 1.91 16 4 C 0.10 2.11 3.69 86.68 0.32 2.43 16 5 N -0.62 -19.05 3.23 -808.68 -2.61 -21.66 16 6 C 0.53 17.12 6.02 87.66 0.53 17.65 16 7 O -0.58 -25.14 15.59 -3.04 -0.05 -25.18 16 8 C -0.13 -2.53 0.39 -51.85 -0.02 -2.55 16 9 C 0.27 4.06 4.17 71.98 0.30 4.36 16 10 F -0.22 -5.26 16.87 44.97 0.76 -4.50 16 11 F -0.20 -3.12 12.07 44.97 0.54 -2.58 16 12 C -0.10 -1.72 5.48 31.88 0.17 -1.55 16 13 C -0.13 -2.27 6.54 31.67 0.21 -2.06 16 14 C -0.12 -1.53 6.80 31.32 0.21 -1.32 16 15 C -0.12 -1.43 4.66 31.32 0.15 -1.29 16 16 C 0.12 4.40 6.32 86.53 0.55 4.95 16 17 C -0.09 -3.03 2.64 -9.91 -0.03 -3.06 16 18 H 0.09 2.90 7.85 -2.38 -0.02 2.88 16 19 C 0.17 6.98 5.34 86.38 0.46 7.44 16 20 N -0.75 -40.24 5.33 -343.44 -1.83 -42.07 16 21 C -0.25 -14.78 9.99 84.03 0.84 -13.94 16 22 H 0.07 4.20 7.83 -2.91 -0.02 4.18 16 23 C -0.07 -4.49 5.50 84.86 0.47 -4.02 16 24 N -0.97 -62.16 13.06 21.65 0.28 -61.88 16 25 Si 0.98 48.08 29.55 68.60 2.03 50.11 16 26 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 28 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 32 H 0.09 1.81 6.92 -2.39 -0.02 1.79 16 33 H 0.12 1.85 3.86 -2.39 -0.01 1.84 16 34 H 0.18 0.67 8.06 -2.38 -0.02 0.65 16 35 H 0.05 1.38 7.35 -2.39 -0.02 1.36 16 36 H 0.12 1.05 8.00 -2.39 -0.02 1.03 16 37 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.03 0.82 7.82 -2.39 -0.02 0.81 16 39 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.13 0.51 7.84 -2.39 -0.02 0.49 16 42 H 0.08 1.15 5.28 -2.39 -0.01 1.14 16 43 H 0.04 1.94 7.44 -2.39 -0.02 1.92 16 44 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 45 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.37 21.44 7.51 -92.71 -0.70 20.74 16 48 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -82.32 372.10 4.18 -78.14 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.27 Total: 26.46 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 4.79 Total: 3.17 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -4.16 Total: -125.61 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.05 Total: -25.18 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 1.30 Total: -7.08 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -82.32 4.18 -78.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106575973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.554 kcal (2) G-P(sol) polarization free energy of solvation -82.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds