Wall clock time and date at job start Tue Mar 31 2020 17:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.91403 * 2 1 4 4 C 1.54909 * 111.00434 * 236.10241 * 2 1 3 5 5 N 1.47422 * 104.83296 * 204.92048 * 4 2 1 6 6 C 1.34782 * 125.64551 * 204.09340 * 5 4 2 7 7 O 1.21285 * 119.99797 * 180.02562 * 6 5 4 8 8 C 1.50692 * 120.00193 * 0.03830 * 6 5 4 9 9 C 1.53003 * 109.47235 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.01142 * 53.60851 * 9 8 6 11 11 C 1.54270 * 110.03062 * 174.99891 * 9 8 6 12 12 C 1.54889 * 104.19251 * 142.89881 * 11 9 8 13 13 C 1.54894 * 102.74701 * 322.05331 * 12 11 9 14 14 C 1.53870 * 110.03189 * 292.16552 * 9 8 6 15 15 F 1.39895 * 110.03500 * 359.97438 * 14 9 8 16 16 F 1.39897 * 110.03204 * 121.43013 * 14 9 8 17 17 C 1.47015 * 108.70390 * 24.12205 * 5 4 2 18 18 C 1.54323 * 107.27534 * 358.94912 * 17 5 4 19 19 H 1.08991 * 110.72389 * 96.33906 * 18 17 5 20 20 C 1.53003 * 110.72087 * 219.44454 * 18 17 5 21 21 N 1.46498 * 109.46778 * 293.53829 * 20 18 17 22 22 C 1.36936 * 119.99972 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99631 * 0.02562 * 22 21 20 24 24 C 1.38806 * 120.00202 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00103 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00201 * 179.72570 * 24 22 21 27 27 H 1.48501 * 109.47085 * 270.27640 * 26 24 22 28 28 H 1.48497 * 109.46789 * 30.27649 * 26 24 22 29 29 H 1.48490 * 109.47245 * 150.27799 * 26 24 22 30 30 H 1.09005 * 109.46819 * 296.09575 * 1 2 3 31 31 H 1.08999 * 109.47306 * 56.09731 * 1 2 3 32 32 H 1.09002 * 109.46823 * 176.09483 * 1 2 3 33 33 H 1.08999 * 110.36770 * 86.07342 * 4 2 1 34 34 H 1.09004 * 110.45794 * 323.80117 * 4 2 1 35 35 H 1.09001 * 109.47415 * 299.99910 * 8 6 5 36 36 H 1.09004 * 109.47466 * 59.99719 * 8 6 5 37 37 H 1.09001 * 110.48647 * 261.57002 * 11 9 8 38 38 H 1.08999 * 110.48512 * 24.08395 * 11 9 8 39 39 H 1.08996 * 110.75854 * 80.37374 * 12 11 9 40 40 H 1.09006 * 110.75372 * 203.55588 * 12 11 9 41 41 H 1.08999 * 110.48247 * 156.62426 * 13 12 11 42 42 H 1.08998 * 110.48736 * 279.26785 * 13 12 11 43 43 H 1.09001 * 109.88646 * 239.52723 * 17 5 4 44 44 H 1.09006 * 110.00801 * 118.43314 * 17 5 4 45 45 H 1.08998 * 109.46943 * 173.54548 * 20 18 17 46 46 H 1.08994 * 109.47116 * 53.54159 * 20 18 17 47 47 H 0.97001 * 120.00384 * 0.02562 * 21 20 18 48 48 H 0.97005 * 119.99717 * 359.71965 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8065 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4476 -1.5616 -1.5942 7 8 5.5127 -1.9101 -1.1304 8 6 4.2654 -1.4844 -3.0881 9 6 5.5659 -1.8939 -3.7824 10 1 5.8911 -2.8691 -3.4199 11 6 5.3572 -1.9405 -5.3102 12 6 6.6907 -1.4092 -5.8920 13 6 7.0742 -0.2858 -4.8970 14 6 6.6575 -0.8418 -3.5197 15 9 6.1483 0.1883 -2.7218 16 9 7.7561 -1.4377 -2.8912 17 6 3.4674 -1.2742 0.6959 18 6 2.0861 -0.8081 1.2022 19 1 1.4479 -1.6633 1.4238 20 6 2.2350 0.0875 2.4338 21 7 2.7615 -0.7014 3.5503 22 6 2.9798 -0.1081 4.7650 23 1 2.7634 0.9414 4.9000 24 6 3.4791 -0.8554 5.8228 25 7 3.7433 -2.1343 5.6582 26 14 3.7841 -0.0442 7.4776 27 1 5.1688 0.4907 7.5190 28 1 2.8181 1.0672 7.6695 29 1 3.6078 -1.0456 8.5598 30 1 -0.3633 0.4521 0.9230 31 1 -0.3634 0.5732 -0.8529 32 1 -0.3633 -1.0253 -0.0700 33 1 2.1559 -0.1719 -2.0837 34 1 1.4524 -1.6703 -1.4044 35 1 3.4635 -2.1574 -3.3916 36 1 4.0090 -0.4633 -3.3706 37 1 5.1782 -2.9640 -5.6397 38 1 4.5278 -1.2962 -5.6017 39 1 7.4481 -2.1931 -5.9003 40 1 6.5420 -1.0073 -6.8942 41 1 8.1482 -0.1017 -4.9250 42 1 6.5236 0.6276 -5.1221 43 1 4.2426 -0.5998 1.0598 44 1 3.6661 -2.2885 1.0421 45 1 1.2619 0.4967 2.7052 46 1 2.9223 0.9030 2.2091 47 1 2.9562 -1.6439 3.4290 48 1 3.5852 -2.5555 4.7988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106581378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:27 Heat of formation + Delta-G solvation = -139.874412 kcal Electronic energy + Delta-G solvation = -29639.911057 eV Core-core repulsion = 25364.877440 eV Total energy + Delta-G solvation = -4275.033616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.87375 -46.92658 -40.17532 -38.38607 -37.33759 -34.88565 -33.02016 -32.11527 -31.38608 -29.06836 -28.20048 -26.72987 -26.21526 -24.64412 -23.06998 -21.68121 -21.30766 -20.63435 -19.92984 -19.16462 -17.81597 -17.29912 -17.10231 -16.75936 -16.31584 -16.10233 -15.41146 -14.95558 -14.58067 -14.28162 -14.19549 -14.03522 -13.95870 -13.76155 -13.52081 -13.31974 -13.21877 -12.96808 -12.84268 -12.59554 -12.40929 -12.14457 -12.01106 -11.98929 -11.84099 -11.67199 -11.61614 -11.47977 -11.15966 -10.81604 -10.71534 -10.68617 -10.60735 -10.48782 -10.31501 -9.96472 -9.73370 -9.12535 -8.84558 -8.52777 -6.96842 -6.06105 -3.06002 2.71518 2.98548 3.54890 3.56727 3.60565 3.68113 3.73942 3.92514 4.05064 4.38610 4.46095 4.57914 4.63948 4.68936 4.80197 4.81352 4.87554 4.95008 4.99989 5.10732 5.20004 5.26323 5.29656 5.35230 5.36707 5.43935 5.45409 5.46801 5.53008 5.64271 5.68363 5.70653 5.75064 5.84038 5.93231 5.94977 6.07339 6.17161 6.25474 6.36858 6.40261 6.64478 6.78441 7.60032 7.84564 8.24746 8.80163 9.26801 10.13185 10.27597 11.42549 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015996 B = 0.002828 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.001723 B = 9899.032978 C =11047.743953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.087 0.913 4 C 0.104 3.896 5 N -0.618 5.618 6 C 0.524 3.476 7 O -0.530 6.530 8 C -0.129 4.129 9 C -0.119 4.119 10 H 0.109 0.891 11 C -0.118 4.118 12 C -0.122 4.122 13 C -0.165 4.165 14 C 0.293 3.707 15 F -0.196 7.196 16 F -0.190 7.190 17 C 0.117 3.883 18 C -0.101 4.101 19 H 0.084 0.916 20 C 0.171 3.829 21 N -0.744 5.744 22 C -0.332 4.332 23 H 0.064 0.936 24 C -0.045 4.045 25 N -0.943 5.943 26 Si 1.083 2.917 27 H -0.295 1.295 28 H -0.295 1.295 29 H -0.288 1.288 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.025 0.975 46 H 0.021 0.979 47 H 0.367 0.633 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.444 2.655 -28.889 29.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 H 0.105 0.895 4 C -0.019 4.019 5 N -0.352 5.352 6 C 0.312 3.688 7 O -0.406 6.406 8 C -0.169 4.169 9 C -0.139 4.139 10 H 0.127 0.873 11 C -0.156 4.156 12 C -0.160 4.160 13 C -0.203 4.203 14 C 0.257 3.743 15 F -0.177 7.177 16 F -0.171 7.171 17 C -0.005 4.005 18 C -0.121 4.121 19 H 0.102 0.898 20 C 0.043 3.957 21 N -0.390 5.390 22 C -0.463 4.463 23 H 0.082 0.918 24 C -0.243 4.243 25 N -0.589 5.589 26 Si 0.914 3.086 27 H -0.223 1.223 28 H -0.222 1.222 29 H -0.214 1.214 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.039 0.961 47 H 0.200 0.800 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.291 2.437 -27.043 27.183 hybrid contribution -0.463 0.122 -1.334 1.417 sum -1.754 2.559 -28.377 28.546 Atomic orbital electron populations 1.21692 0.93628 1.02047 1.02274 1.22357 0.96211 0.99554 0.93705 0.89492 1.22420 0.83501 0.98138 0.97861 1.48507 1.12141 1.67036 1.07534 1.20141 0.82991 0.77338 0.88358 1.90777 1.25450 1.46933 1.77477 1.21671 0.98494 1.04462 0.92286 1.22631 0.93853 1.00419 0.96962 0.87319 1.22436 0.98235 1.02706 0.92186 1.22461 0.97410 0.97567 0.98533 1.23404 1.04094 1.00433 0.92378 1.21593 0.83204 0.83452 0.86099 1.92994 1.87283 1.60520 1.76904 1.93036 1.55331 1.84121 1.84608 1.22001 0.98273 1.02092 0.78135 1.22538 0.95104 0.99186 0.95251 0.89774 1.20562 0.96646 0.92793 0.85706 1.42369 1.79008 1.09083 1.08496 1.20037 1.41310 0.95522 0.89456 0.91754 1.25783 0.99390 0.96365 1.02764 1.70848 1.51326 1.10569 1.26157 0.83192 0.75858 0.74229 0.75306 1.22298 1.22180 1.21386 0.91605 0.92572 0.92429 0.90902 0.91304 0.88062 0.88172 0.90002 0.90303 0.90382 0.89913 0.88977 0.88519 0.90727 0.91528 0.95752 0.96098 0.79997 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.31 37.16 0.35 -1.00 16 2 C -0.10 -1.17 3.09 -88.47 -0.27 -1.44 16 3 H 0.09 1.06 8.05 -51.93 -0.42 0.65 16 4 C 0.10 1.10 6.16 -2.53 -0.02 1.08 16 5 N -0.62 -9.04 3.33 -170.53 -0.57 -9.60 16 6 C 0.52 7.97 6.75 -10.99 -0.07 7.90 16 7 O -0.53 -10.51 14.91 5.55 0.08 -10.43 16 8 C -0.13 -1.27 3.64 -27.89 -0.10 -1.37 16 9 C -0.12 -1.16 2.40 -89.50 -0.21 -1.38 16 10 H 0.11 1.23 7.80 -51.93 -0.41 0.82 16 11 C -0.12 -0.67 6.36 -25.07 -0.16 -0.83 16 12 C -0.12 -0.67 6.91 -24.74 -0.17 -0.84 16 13 C -0.17 -1.28 6.40 -25.07 -0.16 -1.44 16 14 C 0.29 3.53 1.79 -25.62 -0.05 3.48 16 15 F -0.20 -2.89 14.09 2.25 0.03 -2.86 16 16 F -0.19 -2.94 16.76 2.25 0.04 -2.90 16 17 C 0.12 2.07 6.15 -3.07 -0.02 2.05 16 18 C -0.10 -1.62 2.48 -88.78 -0.22 -1.84 16 19 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 20 C 0.17 3.47 5.58 -4.04 -0.02 3.45 16 21 N -0.74 -19.23 5.44 -59.91 -0.33 -19.55 16 22 C -0.33 -9.67 9.99 -15.06 -0.15 -9.82 16 23 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.05 -1.36 5.50 -17.43 -0.10 -1.46 16 25 N -0.94 -30.12 13.70 55.49 0.76 -29.36 16 26 Si 1.08 26.79 29.92 -169.99 -5.09 21.70 16 27 H -0.30 -7.15 7.11 56.52 0.40 -6.74 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.07 0.60 7.48 -51.93 -0.39 0.21 16 34 H 0.07 0.63 7.99 -51.93 -0.41 0.21 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.85 7.33 -51.93 -0.38 0.46 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.34 7.85 -51.93 -0.41 -0.07 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.69 8.11 -51.93 -0.42 0.26 16 42 H 0.10 0.63 8.12 -51.93 -0.42 0.21 16 43 H 0.07 1.55 7.77 -51.93 -0.40 1.14 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.02 0.45 8.06 -51.93 -0.42 0.03 16 47 H 0.37 9.73 6.36 -40.82 -0.26 9.47 16 48 H 0.26 8.04 6.77 -40.82 -0.28 7.76 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -36.93 382.74 -8.72 -45.65 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.04 Total: 5.06 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.38 Total: -3.47 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.13 Total: -58.51 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.07 Total: -5.76 kcal Atomic # 14 Polarization: 26.79 SS G_CDS: -5.09 Total: 21.70 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.93 -8.72 -45.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106581378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.229 kcal (2) G-P(sol) polarization free energy of solvation -36.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds