Wall clock time and date at job start Tue Mar 31 2020 17:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.91403 * 2 1 4 4 C 1.54909 * 111.00434 * 236.10241 * 2 1 3 5 5 N 1.47422 * 104.83296 * 204.92048 * 4 2 1 6 6 C 1.34782 * 125.64551 * 204.09340 * 5 4 2 7 7 O 1.21285 * 119.99797 * 180.02562 * 6 5 4 8 8 C 1.50692 * 120.00193 * 0.03830 * 6 5 4 9 9 C 1.53003 * 109.47235 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.01142 * 53.60851 * 9 8 6 11 11 C 1.54270 * 110.03062 * 174.99891 * 9 8 6 12 12 C 1.54889 * 104.19251 * 142.89881 * 11 9 8 13 13 C 1.54894 * 102.74701 * 322.05331 * 12 11 9 14 14 C 1.53870 * 110.03189 * 292.16552 * 9 8 6 15 15 F 1.39895 * 110.03500 * 359.97438 * 14 9 8 16 16 F 1.39897 * 110.03204 * 121.43013 * 14 9 8 17 17 C 1.47015 * 108.70390 * 24.12205 * 5 4 2 18 18 C 1.54323 * 107.27534 * 358.94912 * 17 5 4 19 19 H 1.08991 * 110.72389 * 96.33906 * 18 17 5 20 20 C 1.53003 * 110.72087 * 219.44454 * 18 17 5 21 21 N 1.46498 * 109.46778 * 293.53829 * 20 18 17 22 22 C 1.36936 * 119.99972 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99631 * 0.02562 * 22 21 20 24 24 C 1.38806 * 120.00202 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00103 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00201 * 179.72570 * 24 22 21 27 27 H 1.48501 * 109.47085 * 270.27640 * 26 24 22 28 28 H 1.48497 * 109.46789 * 30.27649 * 26 24 22 29 29 H 1.48490 * 109.47245 * 150.27799 * 26 24 22 30 30 H 1.09005 * 109.46819 * 296.09575 * 1 2 3 31 31 H 1.08999 * 109.47306 * 56.09731 * 1 2 3 32 32 H 1.09002 * 109.46823 * 176.09483 * 1 2 3 33 33 H 1.08999 * 110.36770 * 86.07342 * 4 2 1 34 34 H 1.09004 * 110.45794 * 323.80117 * 4 2 1 35 35 H 1.09001 * 109.47415 * 299.99910 * 8 6 5 36 36 H 1.09004 * 109.47466 * 59.99719 * 8 6 5 37 37 H 1.09001 * 110.48647 * 261.57002 * 11 9 8 38 38 H 1.08999 * 110.48512 * 24.08395 * 11 9 8 39 39 H 1.08996 * 110.75854 * 80.37374 * 12 11 9 40 40 H 1.09006 * 110.75372 * 203.55588 * 12 11 9 41 41 H 1.08999 * 110.48247 * 156.62426 * 13 12 11 42 42 H 1.08998 * 110.48736 * 279.26785 * 13 12 11 43 43 H 1.09001 * 109.88646 * 239.52723 * 17 5 4 44 44 H 1.09006 * 110.00801 * 118.43314 * 17 5 4 45 45 H 1.08998 * 109.46943 * 173.54548 * 20 18 17 46 46 H 1.08994 * 109.47116 * 53.54159 * 20 18 17 47 47 H 0.97001 * 120.00384 * 0.02562 * 21 20 18 48 48 H 0.97005 * 119.99717 * 359.71965 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8065 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4476 -1.5616 -1.5942 7 8 5.5127 -1.9101 -1.1304 8 6 4.2654 -1.4844 -3.0881 9 6 5.5659 -1.8939 -3.7824 10 1 5.8911 -2.8691 -3.4199 11 6 5.3572 -1.9405 -5.3102 12 6 6.6907 -1.4092 -5.8920 13 6 7.0742 -0.2858 -4.8970 14 6 6.6575 -0.8418 -3.5197 15 9 6.1483 0.1883 -2.7218 16 9 7.7561 -1.4377 -2.8912 17 6 3.4674 -1.2742 0.6959 18 6 2.0861 -0.8081 1.2022 19 1 1.4479 -1.6633 1.4238 20 6 2.2350 0.0875 2.4338 21 7 2.7615 -0.7014 3.5503 22 6 2.9798 -0.1081 4.7650 23 1 2.7634 0.9414 4.9000 24 6 3.4791 -0.8554 5.8228 25 7 3.7433 -2.1343 5.6582 26 14 3.7841 -0.0442 7.4776 27 1 5.1688 0.4907 7.5190 28 1 2.8181 1.0672 7.6695 29 1 3.6078 -1.0456 8.5598 30 1 -0.3633 0.4521 0.9230 31 1 -0.3634 0.5732 -0.8529 32 1 -0.3633 -1.0253 -0.0700 33 1 2.1559 -0.1719 -2.0837 34 1 1.4524 -1.6703 -1.4044 35 1 3.4635 -2.1574 -3.3916 36 1 4.0090 -0.4633 -3.3706 37 1 5.1782 -2.9640 -5.6397 38 1 4.5278 -1.2962 -5.6017 39 1 7.4481 -2.1931 -5.9003 40 1 6.5420 -1.0073 -6.8942 41 1 8.1482 -0.1017 -4.9250 42 1 6.5236 0.6276 -5.1221 43 1 4.2426 -0.5998 1.0598 44 1 3.6661 -2.2885 1.0421 45 1 1.2619 0.4967 2.7052 46 1 2.9223 0.9030 2.2091 47 1 2.9562 -1.6439 3.4290 48 1 3.5852 -2.5555 4.7988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106581378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:26 Heat of formation + Delta-G solvation = -164.320917 kcal Electronic energy + Delta-G solvation = -29640.971137 eV Core-core repulsion = 25364.877440 eV Total energy + Delta-G solvation = -4276.093696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -49.88242 -47.98475 -41.34696 -39.45739 -38.18670 -36.80946 -34.41497 -33.06744 -32.87122 -30.62234 -28.84295 -27.81054 -27.22511 -26.12229 -24.98380 -22.67296 -22.18314 -21.50498 -21.14867 -20.27071 -19.36817 -18.71235 -18.18002 -17.81244 -17.48626 -17.06148 -16.58535 -16.42654 -15.89494 -15.64702 -15.35871 -15.18558 -15.14132 -15.05523 -14.85802 -14.39474 -14.26161 -14.16671 -13.86064 -13.68948 -13.35245 -13.30382 -13.15996 -12.87558 -12.84803 -12.64530 -12.55063 -12.48936 -12.24456 -12.14649 -11.94492 -11.92544 -11.79979 -11.61514 -11.58512 -11.46711 -11.20138 -11.01307 -10.93518 -9.76703 -9.17605 -8.45971 -5.39808 1.54086 1.57061 1.65789 1.79903 1.87845 2.67264 2.83174 3.00428 3.18383 3.29054 3.33783 3.36542 3.45243 3.63635 3.73021 3.91367 3.98683 4.11810 4.13901 4.24818 4.28996 4.31261 4.34755 4.42081 4.46846 4.55351 4.55690 4.63164 4.65069 4.69397 4.75194 4.82000 4.85781 4.91171 5.05952 5.08344 5.09341 5.11102 5.15855 5.19030 5.29454 5.34208 5.46969 5.52947 6.42678 6.48034 7.03025 7.08970 7.93168 8.04217 9.05975 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015996 B = 0.002828 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.001723 B = 9899.032978 C =11047.743953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 H 0.084 0.916 4 C 0.104 3.896 5 N -0.619 5.619 6 C 0.510 3.490 7 O -0.591 6.591 8 C -0.118 4.118 9 C -0.120 4.120 10 H 0.082 0.918 11 C -0.106 4.106 12 C -0.117 4.117 13 C -0.158 4.158 14 C 0.264 3.736 15 F -0.218 7.218 16 F -0.222 7.222 17 C 0.123 3.877 18 C -0.090 4.090 19 H 0.086 0.914 20 C 0.171 3.829 21 N -0.759 5.759 22 C -0.336 4.336 23 H 0.068 0.932 24 C -0.107 4.107 25 N -0.975 5.975 26 Si 1.132 2.868 27 H -0.288 1.288 28 H -0.268 1.268 29 H -0.290 1.290 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.141 0.859 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.030 0.970 44 H 0.037 0.963 45 H 0.035 0.965 46 H 0.010 0.990 47 H 0.359 0.641 48 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.049 3.962 -32.399 33.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 H 0.102 0.898 4 C -0.017 4.017 5 N -0.352 5.352 6 C 0.301 3.699 7 O -0.472 6.472 8 C -0.157 4.157 9 C -0.140 4.140 10 H 0.101 0.899 11 C -0.143 4.143 12 C -0.154 4.154 13 C -0.196 4.196 14 C 0.228 3.772 15 F -0.199 7.199 16 F -0.203 7.203 17 C 0.000 4.000 18 C -0.110 4.110 19 H 0.105 0.895 20 C 0.044 3.956 21 N -0.403 5.403 22 C -0.467 4.467 23 H 0.086 0.914 24 C -0.298 4.298 25 N -0.623 5.623 26 Si 0.956 3.044 27 H -0.215 1.215 28 H -0.193 1.193 29 H -0.216 1.216 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.114 0.886 35 H 0.159 0.841 36 H 0.143 0.857 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.090 0.910 40 H 0.131 0.869 41 H 0.106 0.894 42 H 0.133 0.867 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.028 0.972 47 H 0.191 0.809 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.955 3.786 -30.620 31.106 hybrid contribution 0.382 -0.246 -0.245 0.516 sum -3.573 3.540 -30.865 31.272 Atomic orbital electron populations 1.21674 0.91242 1.03127 1.03013 1.22376 0.97998 0.98779 0.91728 0.89808 1.22754 0.81126 0.99588 0.98264 1.48661 1.14045 1.66732 1.05782 1.21346 0.81973 0.75810 0.90762 1.90750 1.27962 1.49551 1.78914 1.21789 0.99715 1.06878 0.87327 1.22700 0.92961 0.98166 1.00181 0.89936 1.22476 0.99108 1.04491 0.88223 1.22514 0.97202 0.96533 0.99181 1.23445 1.04166 1.01918 0.90057 1.22568 0.83389 0.84024 0.87172 1.92936 1.87552 1.61501 1.77900 1.92962 1.57073 1.84763 1.85486 1.21652 0.98107 0.99236 0.81047 1.22387 0.94274 0.99181 0.95136 0.89522 1.20707 0.96057 0.92843 0.85986 1.42627 1.79292 1.09169 1.09223 1.20431 1.39895 0.95756 0.90650 0.91403 1.27332 0.99517 0.96251 1.06699 1.70969 1.53766 1.11921 1.25643 0.82583 0.76623 0.74079 0.71089 1.21505 1.19288 1.21624 0.92946 0.89429 0.91551 0.86975 0.88648 0.84113 0.85733 0.88341 0.87532 0.90975 0.86880 0.89383 0.86736 0.95160 0.94433 0.94724 0.97212 0.80944 0.94763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.31 71.98 0.67 -1.42 16 2 C -0.09 -1.91 3.09 -9.40 -0.03 -1.93 16 3 H 0.08 1.87 8.05 -2.39 -0.02 1.85 16 4 C 0.10 1.81 6.16 86.86 0.53 2.35 16 5 N -0.62 -17.91 3.33 -811.81 -2.70 -20.61 16 6 C 0.51 15.63 6.75 87.65 0.59 16.22 16 7 O -0.59 -25.16 14.91 -3.05 -0.05 -25.21 16 8 C -0.12 -1.99 3.64 29.85 0.11 -1.88 16 9 C -0.12 -2.19 2.40 -10.07 -0.02 -2.21 16 10 H 0.08 1.92 7.80 -2.39 -0.02 1.90 16 11 C -0.11 -0.78 6.36 31.67 0.20 -0.58 16 12 C -0.12 -0.91 6.91 31.89 0.22 -0.69 16 13 C -0.16 -2.19 6.40 31.67 0.20 -1.99 16 14 C 0.26 6.41 1.79 31.32 0.06 6.47 16 15 F -0.22 -6.54 14.09 44.97 0.63 -5.91 16 16 F -0.22 -7.41 16.76 44.97 0.75 -6.66 16 17 C 0.12 4.65 6.15 86.73 0.53 5.18 16 18 C -0.09 -2.92 2.48 -9.60 -0.02 -2.94 16 19 H 0.09 2.78 8.04 -2.39 -0.02 2.76 16 20 C 0.17 7.12 5.58 86.38 0.48 7.60 16 21 N -0.76 -40.86 5.44 -343.46 -1.87 -42.73 16 22 C -0.34 -20.01 9.99 84.03 0.84 -19.17 16 23 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 24 C -0.11 -6.56 5.50 84.86 0.47 -6.09 16 25 N -0.97 -64.44 13.70 21.65 0.30 -64.15 16 26 Si 1.13 54.50 29.92 68.60 2.05 56.55 16 27 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 29 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 30 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 33 H 0.11 1.19 7.48 -2.39 -0.02 1.17 16 34 H 0.10 1.26 7.99 -2.39 -0.02 1.24 16 35 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.12 1.55 7.33 -2.39 -0.02 1.53 16 37 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.11 0.26 7.85 -2.39 -0.02 0.24 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 41 H 0.09 1.26 8.11 -2.39 -0.02 1.25 16 42 H 0.11 1.16 8.12 -2.39 -0.02 1.14 16 43 H 0.03 1.38 7.77 -2.39 -0.02 1.36 16 44 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 45 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.01 0.44 8.06 -2.39 -0.02 0.42 16 47 H 0.36 20.21 6.36 -92.71 -0.59 19.62 16 48 H 0.24 16.06 6.77 -92.70 -0.63 15.43 16 Total: -1.00 -89.00 382.74 4.45 -84.55 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.50 Total: 25.25 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 4.83 Total: -1.09 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -4.27 Total: -127.48 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 9 Polarization: -13.96 SS G_CDS: 1.39 Total: -12.57 kcal Atomic # 14 Polarization: 54.50 SS G_CDS: 2.05 Total: 56.55 kcal Total: -89.00 4.45 -84.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106581378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.768 kcal (2) G-P(sol) polarization free energy of solvation -89.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds