Wall clock time and date at job start Tue Mar 31 2020 17:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 110.65783 * 2 1 4 4 C 1.54592 * 110.98701 * 236.84217 * 2 1 3 5 5 N 1.48119 * 103.42017 * 204.37240 * 4 2 1 6 6 C 1.34782 * 127.03340 * 219.28600 * 5 4 2 7 7 O 1.21273 * 120.00047 * 179.68921 * 6 5 4 8 8 C 1.50701 * 119.99641 * 359.68771 * 6 5 4 9 9 C 1.53005 * 109.46917 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.01895 * 53.60490 * 9 8 6 11 11 C 1.54756 * 110.01166 * 292.22086 * 9 8 6 12 12 C 1.54890 * 103.96440 * 217.12393 * 11 9 8 13 13 C 1.54887 * 102.91108 * 37.92718 * 12 11 9 14 14 C 1.53877 * 110.03283 * 174.99946 * 9 8 6 15 15 F 1.39903 * 110.03183 * 0.02562 * 14 9 8 16 16 F 1.39893 * 110.02992 * 238.56814 * 14 9 8 17 17 C 1.47481 * 105.93374 * 39.03090 * 5 4 2 18 18 C 1.54005 * 107.07967 * 334.77459 * 17 5 4 19 19 H 1.09002 * 110.32628 * 120.20687 * 18 17 5 20 20 C 1.53005 * 110.32594 * 242.41339 * 18 17 5 21 21 N 1.46497 * 109.47392 * 293.54713 * 20 18 17 22 22 C 1.36936 * 120.00214 * 179.97438 * 21 20 18 23 23 H 1.08005 * 119.99852 * 0.02562 * 22 21 20 24 24 C 1.38804 * 120.00320 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00126 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99950 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47094 * 90.00224 * 26 24 22 28 28 H 1.48505 * 109.47558 * 210.00210 * 26 24 22 29 29 H 1.48506 * 109.47323 * 330.00286 * 26 24 22 30 30 H 1.09003 * 109.47053 * 296.80474 * 1 2 3 31 31 H 1.08997 * 109.46781 * 56.80643 * 1 2 3 32 32 H 1.08994 * 109.47048 * 176.80990 * 1 2 3 33 33 H 1.09000 * 110.61648 * 85.86436 * 4 2 1 34 34 H 1.08994 * 110.54858 * 322.85587 * 4 2 1 35 35 H 1.08999 * 109.47542 * 59.99857 * 8 6 5 36 36 H 1.08998 * 109.47281 * 299.99855 * 8 6 5 37 37 H 1.09005 * 110.69163 * 98.47744 * 11 9 8 38 38 H 1.08999 * 110.50647 * 335.68360 * 11 9 8 39 39 H 1.09002 * 110.75897 * 279.51836 * 12 11 9 40 40 H 1.09006 * 110.75292 * 156.33066 * 12 11 9 41 41 H 1.08998 * 110.49004 * 80.64153 * 13 12 11 42 42 H 1.09001 * 110.48617 * 203.28662 * 13 12 11 43 43 H 1.08996 * 109.91699 * 94.13349 * 17 5 4 44 44 H 1.09002 * 109.91370 * 215.22735 * 17 5 4 45 45 H 1.09008 * 109.46838 * 53.54986 * 20 18 17 46 46 H 1.08998 * 109.47038 * 173.54568 * 20 18 17 47 47 H 0.96999 * 120.00196 * 0.02562 * 21 20 18 48 48 H 0.97006 * 120.00220 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0837 -0.7894 -1.2083 5 7 3.4322 -1.2056 -0.7584 6 6 4.5594 -1.2405 -1.4964 7 8 5.6027 -1.6000 -0.9934 8 6 4.5232 -0.8328 -2.9468 9 6 5.9239 -0.9639 -3.5484 10 1 6.3125 -1.9672 -3.3741 11 6 6.8703 0.0877 -2.9211 12 6 7.7751 0.5263 -4.0992 13 6 6.7959 0.5455 -5.2991 14 6 5.8785 -0.6712 -5.0584 15 9 4.5696 -0.3684 -5.4487 16 9 6.3500 -1.7762 -5.7751 17 6 3.2903 -1.5681 0.6642 18 6 2.0776 -0.7916 1.2100 19 1 1.3221 -1.4830 1.5835 20 6 2.5158 0.1677 2.3185 21 7 2.9845 -0.6020 3.4735 22 6 3.4302 0.0472 4.5938 23 1 3.4358 1.1267 4.6260 24 6 3.8747 -0.6821 5.6879 25 7 4.3026 -0.0581 6.7649 26 14 3.8657 -2.5492 5.6320 27 1 5.1625 -3.0346 5.0956 28 1 3.6654 -3.0847 7.0026 29 1 2.7619 -3.0129 4.7533 30 1 -0.3633 0.4634 0.9173 31 1 -0.3633 0.5626 -0.8600 32 1 -0.3633 -1.0260 -0.0572 33 1 2.1525 -0.1480 -2.0869 34 1 1.4612 -1.6601 -1.4142 35 1 4.1890 0.2017 -3.0252 36 1 3.8334 -1.4795 -3.4889 37 1 7.4683 -0.3579 -2.1262 38 1 6.3005 0.9358 -2.5414 39 1 8.5733 -0.1975 -4.2636 40 1 8.1871 1.5196 -3.9209 41 1 6.2141 1.4673 -5.3021 42 1 7.3397 0.4335 -6.2372 43 1 3.1178 -2.6402 0.7587 44 1 4.1909 -1.2875 1.2104 45 1 3.3236 0.8014 1.9522 46 1 1.6716 0.7902 2.6150 47 1 2.9798 -1.5716 3.4445 48 1 4.6130 -0.5678 7.5297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106581379.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:30 Heat of formation + Delta-G solvation = -137.246834 kcal Electronic energy + Delta-G solvation = -29370.527819 eV Core-core repulsion = 25095.608143 eV Total energy + Delta-G solvation = -4274.919676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -49.24170 -47.29588 -40.30783 -38.52852 -37.19858 -34.83794 -32.98191 -32.13208 -31.53721 -29.54901 -28.17051 -26.99094 -26.33616 -25.01745 -22.96980 -21.64328 -21.16218 -20.75094 -19.94221 -19.27053 -18.09146 -17.63503 -17.33890 -16.63126 -16.16194 -16.06761 -15.60261 -14.85627 -14.69980 -14.56849 -14.47204 -14.32083 -14.05178 -13.82429 -13.60858 -13.53423 -13.18195 -12.92428 -12.87495 -12.62526 -12.55941 -12.22512 -12.11774 -11.98456 -11.86096 -11.60549 -11.50336 -11.45420 -11.23649 -11.05019 -10.97788 -10.92036 -10.70019 -10.57615 -10.31320 -10.10265 -9.83104 -9.58278 -8.90424 -8.67873 -7.23955 -5.76451 -3.12353 2.58915 2.82181 3.38045 3.41791 3.42464 3.46692 3.57672 3.83657 3.98096 4.37533 4.44206 4.54392 4.60000 4.63173 4.72360 4.79660 4.83652 4.94758 5.00814 5.06646 5.20378 5.26059 5.28415 5.32190 5.33762 5.40619 5.42670 5.53617 5.57472 5.61838 5.64550 5.67580 5.79507 5.85756 5.89907 5.96604 6.01113 6.07475 6.11758 6.24349 6.33335 6.60674 6.73582 7.51794 7.98793 8.12454 8.42284 9.20952 9.93364 10.12484 11.41974 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.002880 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.817268 B = 9720.210815 C =10673.854145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.086 0.914 4 C 0.102 3.898 5 N -0.619 5.619 6 C 0.531 3.469 7 O -0.534 6.534 8 C -0.128 4.128 9 C -0.115 4.115 10 H 0.109 0.891 11 C -0.112 4.112 12 C -0.125 4.125 13 C -0.160 4.160 14 C 0.283 3.717 15 F -0.199 7.199 16 F -0.198 7.198 17 C 0.108 3.892 18 C -0.108 4.108 19 H 0.086 0.914 20 C 0.168 3.832 21 N -0.756 5.756 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.883 3.117 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.028 0.972 46 H 0.030 0.970 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.948 0.677 -27.789 27.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.104 0.896 4 C -0.021 4.021 5 N -0.353 5.353 6 C 0.319 3.681 7 O -0.411 6.411 8 C -0.168 4.168 9 C -0.134 4.134 10 H 0.127 0.873 11 C -0.149 4.149 12 C -0.163 4.163 13 C -0.198 4.198 14 C 0.246 3.754 15 F -0.180 7.180 16 F -0.179 7.179 17 C -0.014 4.014 18 C -0.127 4.127 19 H 0.104 0.896 20 C 0.041 3.959 21 N -0.402 5.402 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.582 5.582 26 Si 0.713 3.287 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.046 0.954 46 H 0.048 0.952 47 H 0.193 0.807 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.247 0.632 -27.442 27.478 hybrid contribution -0.239 -1.505 -0.022 1.524 sum -1.486 -0.873 -27.464 27.518 Atomic orbital electron populations 1.21735 0.93707 1.02026 1.02318 1.22217 0.96145 0.99827 0.93705 0.89554 1.22607 0.83125 0.98666 0.97710 1.48806 1.08229 1.66161 1.12143 1.20055 0.82232 0.77953 0.87812 1.90732 1.29605 1.47603 1.73135 1.21652 0.97655 1.04418 0.93076 1.22629 0.96748 1.03973 0.90085 0.87288 1.22502 0.97025 0.97462 0.97915 1.22524 0.97462 1.02906 0.93388 1.23359 0.98194 0.96816 1.01470 1.21897 0.77965 0.84833 0.90662 1.92984 1.39149 1.93307 1.92529 1.93017 1.88215 1.56134 1.80490 1.22192 1.00264 0.98593 0.80396 1.22449 0.96581 0.98096 0.95579 0.89576 1.20669 0.96682 0.92631 0.85966 1.42720 1.78818 1.04278 1.14349 1.19034 1.34585 0.93137 0.90674 0.89249 1.24664 1.00994 0.97306 0.96089 1.69701 1.49074 1.34318 1.05106 0.86569 0.77937 0.87352 0.76814 1.20934 1.21693 1.20351 0.91635 0.92528 0.92465 0.90248 0.90803 0.88112 0.88372 0.88962 0.90727 0.90452 0.89859 0.88341 0.89015 0.92033 0.89135 0.95447 0.95186 0.80681 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.17 37.16 0.34 -0.87 16 2 C -0.10 -1.04 3.18 -88.93 -0.28 -1.33 16 3 H 0.09 0.94 7.86 -51.93 -0.41 0.53 16 4 C 0.10 0.96 6.38 -2.32 -0.01 0.94 16 5 N -0.62 -8.00 3.29 -169.99 -0.56 -8.56 16 6 C 0.53 7.17 7.68 -10.98 -0.08 7.08 16 7 O -0.53 -9.24 15.17 5.56 0.08 -9.16 16 8 C -0.13 -1.24 3.12 -27.88 -0.09 -1.32 16 9 C -0.11 -1.12 2.40 -89.24 -0.21 -1.33 16 10 H 0.11 1.21 7.80 -51.93 -0.41 0.80 16 11 C -0.11 -1.03 5.45 -24.81 -0.14 -1.17 16 12 C -0.13 -0.86 6.89 -24.74 -0.17 -1.03 16 13 C -0.16 -1.08 6.40 -25.07 -0.16 -1.24 16 14 C 0.28 2.55 2.53 -25.61 -0.06 2.49 16 15 F -0.20 -1.91 15.45 2.25 0.03 -1.87 16 16 F -0.20 -2.11 17.04 2.25 0.04 -2.07 16 17 C 0.11 1.65 6.31 -2.98 -0.02 1.63 16 18 C -0.11 -1.52 2.65 -89.24 -0.24 -1.76 16 19 H 0.09 1.20 7.85 -51.93 -0.41 0.79 16 20 C 0.17 3.13 5.34 -4.04 -0.02 3.11 16 21 N -0.76 -17.86 5.14 -59.91 -0.31 -18.16 16 22 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 23 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 24 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 25 N -0.93 -29.65 13.97 55.49 0.78 -28.88 16 26 Si 0.88 22.40 27.74 -169.99 -4.71 17.69 16 27 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.47 8.11 -51.93 -0.42 0.04 16 33 H 0.08 0.58 7.23 -51.93 -0.38 0.20 16 34 H 0.07 0.61 8.02 -51.93 -0.42 0.20 16 35 H 0.10 0.81 7.73 -51.93 -0.40 0.41 16 36 H 0.10 0.85 7.76 -51.93 -0.40 0.44 16 37 H 0.09 1.02 7.67 -51.93 -0.40 0.63 16 38 H 0.07 0.68 7.77 -51.93 -0.40 0.27 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.56 8.12 -51.93 -0.42 0.14 16 42 H 0.09 0.54 8.11 -51.93 -0.42 0.12 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 1.70 7.49 -51.93 -0.39 1.31 16 45 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.36 8.33 5.37 -40.82 -0.22 8.11 16 48 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 382.27 15.07 5.76 5.76 Total: -1.00 -33.94 382.27 -8.33 -42.28 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -8.04 Total: 4.86 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -1.40 Total: -1.87 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.09 Total: -55.60 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.07 Total: -3.95 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.94 -8.33 -42.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106581379.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.972 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds