Wall clock time and date at job start Tue Mar 31 2020 17:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 110.65783 * 2 1 4 4 C 1.54592 * 110.98701 * 236.84217 * 2 1 3 5 5 N 1.48119 * 103.42017 * 204.37240 * 4 2 1 6 6 C 1.34782 * 127.03340 * 219.28600 * 5 4 2 7 7 O 1.21273 * 120.00047 * 179.68921 * 6 5 4 8 8 C 1.50701 * 119.99641 * 359.68771 * 6 5 4 9 9 C 1.53005 * 109.46917 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.01895 * 53.60490 * 9 8 6 11 11 C 1.54756 * 110.01166 * 292.22086 * 9 8 6 12 12 C 1.54890 * 103.96440 * 217.12393 * 11 9 8 13 13 C 1.54887 * 102.91108 * 37.92718 * 12 11 9 14 14 C 1.53877 * 110.03283 * 174.99946 * 9 8 6 15 15 F 1.39903 * 110.03183 * 0.02562 * 14 9 8 16 16 F 1.39893 * 110.02992 * 238.56814 * 14 9 8 17 17 C 1.47481 * 105.93374 * 39.03090 * 5 4 2 18 18 C 1.54005 * 107.07967 * 334.77459 * 17 5 4 19 19 H 1.09002 * 110.32628 * 120.20687 * 18 17 5 20 20 C 1.53005 * 110.32594 * 242.41339 * 18 17 5 21 21 N 1.46497 * 109.47392 * 293.54713 * 20 18 17 22 22 C 1.36936 * 120.00214 * 179.97438 * 21 20 18 23 23 H 1.08005 * 119.99852 * 0.02562 * 22 21 20 24 24 C 1.38804 * 120.00320 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00126 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99950 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47094 * 90.00224 * 26 24 22 28 28 H 1.48505 * 109.47558 * 210.00210 * 26 24 22 29 29 H 1.48506 * 109.47323 * 330.00286 * 26 24 22 30 30 H 1.09003 * 109.47053 * 296.80474 * 1 2 3 31 31 H 1.08997 * 109.46781 * 56.80643 * 1 2 3 32 32 H 1.08994 * 109.47048 * 176.80990 * 1 2 3 33 33 H 1.09000 * 110.61648 * 85.86436 * 4 2 1 34 34 H 1.08994 * 110.54858 * 322.85587 * 4 2 1 35 35 H 1.08999 * 109.47542 * 59.99857 * 8 6 5 36 36 H 1.08998 * 109.47281 * 299.99855 * 8 6 5 37 37 H 1.09005 * 110.69163 * 98.47744 * 11 9 8 38 38 H 1.08999 * 110.50647 * 335.68360 * 11 9 8 39 39 H 1.09002 * 110.75897 * 279.51836 * 12 11 9 40 40 H 1.09006 * 110.75292 * 156.33066 * 12 11 9 41 41 H 1.08998 * 110.49004 * 80.64153 * 13 12 11 42 42 H 1.09001 * 110.48617 * 203.28662 * 13 12 11 43 43 H 1.08996 * 109.91699 * 94.13349 * 17 5 4 44 44 H 1.09002 * 109.91370 * 215.22735 * 17 5 4 45 45 H 1.09008 * 109.46838 * 53.54986 * 20 18 17 46 46 H 1.08998 * 109.47038 * 173.54568 * 20 18 17 47 47 H 0.96999 * 120.00196 * 0.02562 * 21 20 18 48 48 H 0.97006 * 120.00220 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0837 -0.7894 -1.2083 5 7 3.4322 -1.2056 -0.7584 6 6 4.5594 -1.2405 -1.4964 7 8 5.6027 -1.6000 -0.9934 8 6 4.5232 -0.8328 -2.9468 9 6 5.9239 -0.9639 -3.5484 10 1 6.3125 -1.9672 -3.3741 11 6 6.8703 0.0877 -2.9211 12 6 7.7751 0.5263 -4.0992 13 6 6.7959 0.5455 -5.2991 14 6 5.8785 -0.6712 -5.0584 15 9 4.5696 -0.3684 -5.4487 16 9 6.3500 -1.7762 -5.7751 17 6 3.2903 -1.5681 0.6642 18 6 2.0776 -0.7916 1.2100 19 1 1.3221 -1.4830 1.5835 20 6 2.5158 0.1677 2.3185 21 7 2.9845 -0.6020 3.4735 22 6 3.4302 0.0472 4.5938 23 1 3.4358 1.1267 4.6260 24 6 3.8747 -0.6821 5.6879 25 7 4.3026 -0.0581 6.7649 26 14 3.8657 -2.5492 5.6320 27 1 5.1625 -3.0346 5.0956 28 1 3.6654 -3.0847 7.0026 29 1 2.7619 -3.0129 4.7533 30 1 -0.3633 0.4634 0.9173 31 1 -0.3633 0.5626 -0.8600 32 1 -0.3633 -1.0260 -0.0572 33 1 2.1525 -0.1480 -2.0869 34 1 1.4612 -1.6601 -1.4142 35 1 4.1890 0.2017 -3.0252 36 1 3.8334 -1.4795 -3.4889 37 1 7.4683 -0.3579 -2.1262 38 1 6.3005 0.9358 -2.5414 39 1 8.5733 -0.1975 -4.2636 40 1 8.1871 1.5196 -3.9209 41 1 6.2141 1.4673 -5.3021 42 1 7.3397 0.4335 -6.2372 43 1 3.1178 -2.6402 0.7587 44 1 4.1909 -1.2875 1.2104 45 1 3.3236 0.8014 1.9522 46 1 1.6716 0.7902 2.6150 47 1 2.9798 -1.5716 3.4445 48 1 4.6130 -0.5678 7.5297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106581379.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:29 Heat of formation + Delta-G solvation = -158.233833 kcal Electronic energy + Delta-G solvation = -29371.437883 eV Core-core repulsion = 25095.608143 eV Total energy + Delta-G solvation = -4275.829741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.97208 -48.03508 -41.33983 -39.52327 -38.04137 -36.60958 -34.26607 -33.32789 -32.88144 -30.95825 -28.84278 -28.08722 -27.21460 -26.24271 -24.62410 -22.59371 -22.22898 -21.54983 -21.04497 -20.24485 -19.69909 -18.81012 -18.20531 -17.40547 -17.21307 -16.92602 -16.64822 -16.45303 -16.00310 -15.67179 -15.40197 -15.22349 -15.14249 -14.83774 -14.72829 -14.47412 -14.35349 -14.17777 -13.96124 -13.77149 -13.54102 -13.31796 -13.20014 -12.97378 -12.85741 -12.82653 -12.59895 -12.57101 -12.17290 -12.12677 -11.95260 -11.89189 -11.85296 -11.70257 -11.61379 -11.50886 -11.44503 -11.03401 -10.91109 -9.74805 -9.33886 -8.06593 -5.40058 1.33065 1.38206 1.44090 1.56203 1.85544 2.44578 2.71050 2.91988 3.15533 3.25061 3.27612 3.36503 3.52457 3.67192 3.79687 3.90127 3.96842 4.01963 4.18384 4.19787 4.24895 4.34891 4.41202 4.42122 4.52216 4.54731 4.61504 4.64996 4.67130 4.75075 4.82600 4.87518 4.92173 5.00088 5.02002 5.05883 5.10201 5.18137 5.19932 5.25615 5.26481 5.38499 5.55802 5.71695 6.17437 6.52778 7.04042 7.09223 7.79940 7.98435 9.15081 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.002880 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.817268 B = 9720.210815 C =10673.854145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 H 0.082 0.918 4 C 0.103 3.897 5 N -0.621 5.621 6 C 0.524 3.476 7 O -0.583 6.583 8 C -0.118 4.118 9 C -0.117 4.117 10 H 0.088 0.912 11 C -0.112 4.112 12 C -0.120 4.120 13 C -0.153 4.153 14 C 0.282 3.718 15 F -0.199 7.199 16 F -0.209 7.209 17 C 0.108 3.892 18 C -0.097 4.097 19 H 0.097 0.903 20 C 0.166 3.834 21 N -0.758 5.758 22 C -0.235 4.235 23 H 0.056 0.944 24 C -0.063 4.063 25 N -0.983 5.983 26 Si 0.951 3.049 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.247 1.247 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.012 0.988 46 H 0.034 0.966 47 H 0.365 0.635 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.930 0.255 -31.078 31.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 H 0.100 0.900 4 C -0.018 4.018 5 N -0.354 5.354 6 C 0.314 3.686 7 O -0.463 6.463 8 C -0.157 4.157 9 C -0.136 4.136 10 H 0.106 0.894 11 C -0.150 4.150 12 C -0.157 4.157 13 C -0.191 4.191 14 C 0.246 3.754 15 F -0.180 7.180 16 F -0.190 7.190 17 C -0.015 4.015 18 C -0.117 4.117 19 H 0.115 0.885 20 C 0.040 3.960 21 N -0.404 5.404 22 C -0.366 4.366 23 H 0.074 0.926 24 C -0.254 4.254 25 N -0.634 5.634 26 Si 0.778 3.222 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.171 1.171 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.114 0.886 35 H 0.143 0.857 36 H 0.134 0.866 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.134 0.866 42 H 0.122 0.878 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.030 0.970 46 H 0.052 0.948 47 H 0.198 0.802 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.290 0.221 -30.798 30.974 hybrid contribution 0.390 -1.277 1.006 1.672 sum -2.899 -1.056 -29.791 29.951 Atomic orbital electron populations 1.21714 0.91689 1.03045 1.02851 1.22213 0.97650 0.99134 0.92119 0.89966 1.22880 0.81029 0.99889 0.98005 1.48926 1.09702 1.65668 1.11074 1.20806 0.81559 0.77020 0.89205 1.90714 1.31491 1.49775 1.74356 1.21664 0.98002 1.05978 0.90049 1.22588 0.96970 1.03009 0.91064 0.89390 1.22447 0.97232 0.97228 0.98102 1.22512 0.97107 1.03691 0.92400 1.23386 0.97754 0.96262 1.01673 1.22022 0.78380 0.85336 0.89661 1.92978 1.39290 1.93267 1.92457 1.92997 1.88373 1.57015 1.80641 1.22012 0.98697 0.98961 0.81874 1.22345 0.96322 0.97610 0.95409 0.88498 1.20813 0.95956 0.93355 0.85829 1.42741 1.78644 1.04708 1.14305 1.19031 1.33425 0.91986 0.92181 0.92602 1.25497 1.01452 1.02685 0.95798 1.69879 1.51002 1.36402 1.06104 0.85460 0.78662 0.80864 0.77165 1.21144 1.21777 1.17102 0.92821 0.90110 0.91444 0.87098 0.88645 0.85738 0.86625 0.91778 0.90451 0.90631 0.88211 0.86609 0.87763 0.91617 0.93538 0.96970 0.94803 0.80169 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.17 71.98 0.66 -1.15 16 2 C -0.09 -1.65 3.18 -9.70 -0.03 -1.68 16 3 H 0.08 1.58 7.86 -2.39 -0.02 1.56 16 4 C 0.10 1.53 6.38 86.61 0.55 2.09 16 5 N -0.62 -15.05 3.29 -810.10 -2.67 -17.72 16 6 C 0.52 13.79 7.68 87.66 0.67 14.46 16 7 O -0.58 -20.93 15.17 -3.01 -0.05 -20.98 16 8 C -0.12 -2.01 3.12 29.85 0.09 -1.92 16 9 C -0.12 -2.17 2.40 -9.90 -0.02 -2.20 16 10 H 0.09 2.01 7.80 -2.39 -0.02 1.99 16 11 C -0.11 -2.05 5.45 31.84 0.17 -1.87 16 12 C -0.12 -1.47 6.89 31.88 0.22 -1.25 16 13 C -0.15 -1.65 6.40 31.67 0.20 -1.45 16 14 C 0.28 4.53 2.53 31.32 0.08 4.61 16 15 F -0.20 -3.21 15.45 44.97 0.69 -2.51 16 16 F -0.21 -4.20 17.04 44.97 0.77 -3.43 16 17 C 0.11 3.24 6.31 86.53 0.55 3.79 16 18 C -0.10 -2.61 2.65 -9.90 -0.03 -2.64 16 19 H 0.10 2.44 7.85 -2.39 -0.02 2.42 16 20 C 0.17 6.23 5.34 86.38 0.46 6.69 16 21 N -0.76 -36.06 5.14 -343.44 -1.76 -37.82 16 22 C -0.24 -13.80 10.47 84.03 0.88 -12.92 16 23 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 24 C -0.06 -3.80 5.50 84.86 0.47 -3.34 16 25 N -0.98 -64.47 13.97 21.65 0.30 -64.17 16 26 Si 0.95 46.76 27.74 68.60 1.90 48.67 16 27 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 28 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 29 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.79 8.11 -2.39 -0.02 0.78 16 33 H 0.11 1.02 7.23 -2.39 -0.02 1.01 16 34 H 0.10 1.10 8.02 -2.39 -0.02 1.08 16 35 H 0.12 1.56 7.73 -2.39 -0.02 1.55 16 36 H 0.12 1.61 7.76 -2.39 -0.02 1.59 16 37 H 0.06 1.52 7.67 -2.38 -0.02 1.51 16 38 H 0.08 1.33 7.77 -2.39 -0.02 1.31 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.12 0.89 8.12 -2.39 -0.02 0.87 16 42 H 0.10 0.92 8.11 -2.39 -0.02 0.90 16 43 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.05 1.81 7.49 -2.39 -0.02 1.79 16 45 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 46 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.37 16.60 5.37 -92.71 -0.50 16.10 16 48 H 0.26 16.10 8.31 -92.70 -0.77 15.33 16 Total: -1.00 -77.94 382.27 4.51 -73.43 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.39 Total: 23.30 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 4.93 Total: 1.22 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -4.13 Total: -119.70 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.05 Total: -20.98 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 1.46 Total: -5.94 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.90 Total: 48.67 kcal Total: -77.94 4.51 -73.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106581379.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.803 kcal (2) G-P(sol) polarization free energy of solvation -77.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds