Wall clock time and date at job start Tue Mar 31 2020 17:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.36914 * 2 1 4 4 C 1.54001 * 110.32578 * 237.81123 * 2 1 3 5 5 N 1.47494 * 107.24292 * 242.31990 * 4 2 1 6 6 C 1.34772 * 127.02863 * 154.61825 * 5 4 2 7 7 O 1.21277 * 120.00394 * 354.93521 * 6 5 4 8 8 C 1.50700 * 119.99568 * 174.94611 * 6 5 4 9 9 H 1.08996 * 109.47796 * 27.84769 * 8 6 5 10 10 C 1.53005 * 109.47230 * 147.85002 * 8 6 5 11 11 C 1.53002 * 109.46833 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.47269 * 299.99607 * 11 10 8 13 13 C 1.52994 * 109.47184 * 60.00206 * 12 11 10 14 14 F 1.39899 * 109.47062 * 59.99975 * 13 12 11 15 15 F 1.39893 * 109.47520 * 179.97438 * 13 12 11 16 16 C 1.52999 * 109.46858 * 267.84601 * 8 6 5 17 17 C 1.48381 * 105.79372 * 334.77878 * 5 4 2 18 18 C 1.54616 * 110.32354 * 122.18933 * 2 1 3 19 19 H 1.09002 * 110.74193 * 22.40619 * 18 2 1 20 20 C 1.53004 * 110.74122 * 259.07541 * 18 2 1 21 21 N 1.46497 * 109.47325 * 174.99853 * 20 18 2 22 22 C 1.36933 * 120.00027 * 179.97438 * 21 20 18 23 23 H 1.08004 * 120.00157 * 0.02562 * 22 21 20 24 24 C 1.38815 * 120.00160 * 180.02562 * 22 21 20 25 25 N 1.31616 * 120.00137 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99842 * 0.02562 * 24 22 21 27 27 H 1.48507 * 109.47363 * 89.99595 * 26 24 22 28 28 H 1.48502 * 109.47179 * 209.99535 * 26 24 22 29 29 H 1.48500 * 109.47292 * 329.99914 * 26 24 22 30 30 H 1.09001 * 109.47584 * 180.73736 * 1 2 3 31 31 H 1.09006 * 109.47308 * 300.73939 * 1 2 3 32 32 H 1.09003 * 109.46957 * 60.73291 * 1 2 3 33 33 H 1.08996 * 109.91665 * 1.77335 * 4 2 1 34 34 H 1.08995 * 109.91555 * 122.86462 * 4 2 1 35 35 H 1.08994 * 109.47006 * 299.99413 * 10 8 6 36 36 H 1.08998 * 109.47361 * 59.99521 * 10 8 6 37 37 H 1.08996 * 109.47532 * 60.00508 * 11 10 8 38 38 H 1.09004 * 109.46838 * 180.02562 * 11 10 8 39 39 H 1.08996 * 109.47138 * 180.02562 * 12 11 10 40 40 H 1.09008 * 109.47087 * 300.00409 * 12 11 10 41 41 H 1.08997 * 109.47597 * 300.00089 * 16 8 6 42 42 H 1.08994 * 109.47284 * 59.99897 * 16 8 6 43 43 H 1.08995 * 110.52529 * 280.62380 * 17 5 4 44 44 H 1.09006 * 110.82919 * 157.65493 * 17 5 4 45 45 H 1.08997 * 109.47374 * 295.00278 * 20 18 2 46 46 H 1.09003 * 109.46670 * 55.00023 * 20 18 2 47 47 H 0.96999 * 119.99849 * 0.02562 * 21 20 18 48 48 H 0.97005 * 120.00066 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0649 -0.7693 -1.2222 5 7 2.8304 -1.9223 -0.7122 6 6 3.0656 -3.0863 -1.3496 7 8 2.5515 -3.3027 -2.4265 8 6 3.9674 -4.1190 -0.7240 9 1 3.9373 -4.0184 0.3609 10 6 3.4918 -5.5183 -1.1199 11 6 4.4078 -6.5667 -0.4852 12 6 5.8411 -6.3570 -0.9777 13 6 6.3167 -4.9577 -0.5820 14 9 6.2785 -4.8287 0.8105 15 9 7.6274 -4.7661 -1.0317 16 6 5.4009 -3.9094 -1.2160 17 6 3.2835 -1.5369 0.6471 18 6 2.0670 -0.7724 1.2270 19 1 1.3173 -1.4684 1.6034 20 6 2.5095 0.1961 2.3258 21 7 2.9002 -0.5621 3.5168 22 6 3.3352 0.0967 4.6357 23 1 3.3899 1.1753 4.6402 24 6 3.7059 -0.6218 5.7641 25 7 4.1236 0.0115 6.8397 26 14 3.6120 -2.4874 5.7561 27 1 4.9032 -3.0461 5.2806 28 1 3.3382 -2.9752 7.1317 29 1 2.5200 -2.9242 4.8495 30 1 -0.3634 -1.0276 0.0132 31 1 -0.3634 0.5253 0.8833 32 1 -0.3633 0.5024 -0.8965 33 1 1.2334 -1.1175 -1.8348 34 1 2.7154 -0.1234 -1.8119 35 1 2.4706 -5.6676 -0.7693 36 1 3.5219 -5.6190 -2.2048 37 1 4.3780 -6.4663 0.5997 38 1 4.0692 -7.5636 -0.7676 39 1 6.4935 -7.1041 -0.5259 40 1 5.8708 -6.4575 -2.0627 41 1 5.4311 -4.0101 -2.3009 42 1 5.7397 -2.9126 -0.9341 43 1 4.1553 -0.8853 0.5890 44 1 3.5043 -2.4199 1.2470 45 1 3.3584 0.7820 1.9735 46 1 1.6850 0.8643 2.5747 47 1 2.8514 -1.5309 3.5127 48 1 4.3830 -0.4906 7.6281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106657967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:42 Heat of formation + Delta-G solvation = -142.273815 kcal Electronic energy + Delta-G solvation = -30086.257239 eV Core-core repulsion = 25811.119577 eV Total energy + Delta-G solvation = -4275.137662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.16241 -47.14216 -40.53145 -38.60063 -37.05232 -34.83568 -33.16150 -31.77987 -31.44830 -30.27663 -29.50062 -26.88036 -25.73621 -24.08704 -23.11792 -22.82464 -21.19511 -20.61256 -19.96213 -19.31996 -17.82623 -17.51685 -17.25608 -16.77543 -16.49874 -16.01290 -15.41693 -15.24140 -14.57034 -14.50746 -14.32330 -14.09927 -13.80284 -13.69176 -13.58109 -13.45829 -13.34713 -13.08089 -12.98308 -12.79884 -12.54837 -12.52469 -12.27032 -12.16781 -11.93131 -11.58398 -11.55002 -11.40287 -11.23515 -11.08959 -10.96826 -10.80864 -10.67823 -10.53823 -10.41649 -10.17555 -9.80877 -9.62360 -8.94610 -8.77432 -7.28579 -5.80270 -3.16592 2.40111 2.77123 3.34127 3.36847 3.43359 3.50477 3.74195 3.98737 4.04110 4.32587 4.45412 4.50764 4.55915 4.60362 4.67647 4.75044 4.79240 4.86276 4.97161 5.07095 5.15605 5.28518 5.34134 5.40923 5.44160 5.45296 5.49814 5.50649 5.54457 5.58167 5.64315 5.66904 5.73359 5.76420 5.85118 5.93990 5.97362 5.97851 6.05045 6.14308 6.31848 6.56417 6.66282 7.40957 7.94730 7.99993 8.38319 9.16699 9.88973 10.07771 11.38053 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.009092 B = 0.004635 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.953101 B = 6039.925867 C = 8205.313432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.090 0.910 4 C 0.110 3.890 5 N -0.619 5.619 6 C 0.541 3.459 7 O -0.544 6.544 8 C -0.105 4.105 9 H 0.103 0.897 10 C -0.107 4.107 11 C -0.120 4.120 12 C -0.159 4.159 13 C 0.292 3.708 14 F -0.194 7.194 15 F -0.200 7.200 16 C -0.146 4.146 17 C 0.102 3.898 18 C -0.106 4.106 19 H 0.084 0.916 20 C 0.169 3.831 21 N -0.756 5.756 22 C -0.246 4.246 23 H 0.090 0.910 24 C 0.007 3.993 25 N -0.933 5.933 26 Si 0.881 3.119 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.278 1.278 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.031 0.969 46 H 0.033 0.967 47 H 0.360 0.640 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 -10.071 -19.765 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.108 0.892 4 C -0.013 4.013 5 N -0.352 5.352 6 C 0.330 3.670 7 O -0.421 6.421 8 C -0.127 4.127 9 H 0.121 0.879 10 C -0.144 4.144 11 C -0.157 4.157 12 C -0.197 4.197 13 C 0.256 3.744 14 F -0.175 7.175 15 F -0.181 7.181 16 C -0.184 4.184 17 C -0.020 4.020 18 C -0.126 4.126 19 H 0.103 0.897 20 C 0.041 3.959 21 N -0.402 5.402 22 C -0.376 4.376 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.581 5.581 26 Si 0.711 3.289 27 H -0.208 1.208 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.193 0.807 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.260 -10.073 -20.216 22.622 hybrid contribution 0.228 -1.158 0.424 1.254 sum -1.032 -11.230 -19.792 22.780 Atomic orbital electron populations 1.21831 0.94038 1.01964 1.02041 1.22086 0.96521 0.99795 0.93465 0.89174 1.22130 0.95874 0.86784 0.96511 1.48960 1.53113 1.14850 1.18240 1.19956 0.81377 0.80938 0.84758 1.90683 1.51670 1.77916 1.21863 1.21269 0.93359 0.95339 1.02696 0.87916 1.21492 0.99635 0.91097 1.02225 1.21543 0.92565 0.99892 1.01726 1.22550 0.99028 0.94073 1.04006 1.20974 0.79372 0.97857 0.76240 1.93048 1.96398 1.97081 1.30940 1.93016 1.39610 1.96484 1.89009 1.22383 0.93254 0.99827 1.02970 1.22837 0.97848 1.00053 0.81286 1.22635 0.96731 0.98076 0.95134 0.89747 1.20621 0.97321 0.92598 0.85358 1.42708 1.80910 1.04455 1.12091 1.19035 1.35921 0.93197 0.89459 0.89171 1.24660 1.01105 0.97222 0.95917 1.69696 1.50347 1.34371 1.03638 0.86609 0.77919 0.87437 0.76951 1.20818 1.21680 1.20381 0.92704 0.91771 0.92606 0.90518 0.91612 0.90585 0.90049 0.90510 0.89894 0.89237 0.88613 0.88024 0.88833 0.89936 0.89963 0.95095 0.94941 0.80748 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.89 37.16 0.33 -1.10 16 2 C -0.10 -1.09 3.17 -89.25 -0.28 -1.38 16 3 H 0.09 0.93 7.85 -51.93 -0.41 0.53 16 4 C 0.11 1.24 6.63 -2.98 -0.02 1.22 16 5 N -0.62 -7.74 3.30 -169.54 -0.56 -8.30 16 6 C 0.54 7.05 6.92 -10.99 -0.08 6.98 16 7 O -0.54 -8.49 16.53 5.56 0.09 -8.40 16 8 C -0.11 -1.13 2.11 -91.77 -0.19 -1.33 16 9 H 0.10 1.15 6.01 -51.93 -0.31 0.84 16 10 C -0.11 -0.98 4.83 -26.73 -0.13 -1.11 16 11 C -0.12 -0.92 5.80 -26.73 -0.16 -1.08 16 12 C -0.16 -1.25 5.45 -26.73 -0.15 -1.40 16 13 C 0.29 3.09 2.10 -26.76 -0.06 3.03 16 14 F -0.19 -2.55 16.02 2.25 0.04 -2.51 16 15 F -0.20 -2.39 17.06 2.25 0.04 -2.35 16 16 C -0.15 -1.48 4.71 -26.75 -0.13 -1.60 16 17 C 0.10 1.33 6.28 -1.98 -0.01 1.31 16 18 C -0.11 -1.45 2.63 -88.74 -0.23 -1.68 16 19 H 0.08 1.21 7.86 -51.93 -0.41 0.81 16 20 C 0.17 2.93 5.58 -4.04 -0.02 2.91 16 21 N -0.76 -16.90 5.32 -59.91 -0.32 -17.22 16 22 C -0.25 -6.76 10.47 -15.06 -0.16 -6.92 16 23 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 24 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 25 N -0.93 -28.92 13.97 55.49 0.78 -28.15 16 26 Si 0.88 21.63 27.74 -169.99 -4.71 16.92 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 30 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.90 7.55 -51.93 -0.39 0.51 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.76 7.85 -51.93 -0.41 0.35 16 37 H 0.08 0.66 7.80 -51.93 -0.41 0.25 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.08 1.07 7.94 -51.93 -0.41 0.66 16 44 H 0.08 1.09 6.49 -51.93 -0.34 0.76 16 45 H 0.03 0.54 7.99 -51.93 -0.42 0.13 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.36 7.86 5.53 -40.82 -0.23 7.63 16 48 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -32.61 380.55 -8.26 -40.87 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -7.96 Total: 5.44 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.38 Total: -2.03 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.10 Total: -53.67 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.07 Total: -4.86 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.92 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.61 -8.26 -40.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106657967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.402 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds