Wall clock time and date at job start Tue Mar 31 2020 17:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.36914 * 2 1 4 4 C 1.54001 * 110.32578 * 237.81123 * 2 1 3 5 5 N 1.47494 * 107.24292 * 242.31990 * 4 2 1 6 6 C 1.34772 * 127.02863 * 154.61825 * 5 4 2 7 7 O 1.21277 * 120.00394 * 354.93521 * 6 5 4 8 8 C 1.50700 * 119.99568 * 174.94611 * 6 5 4 9 9 H 1.08996 * 109.47796 * 27.84769 * 8 6 5 10 10 C 1.53005 * 109.47230 * 147.85002 * 8 6 5 11 11 C 1.53002 * 109.46833 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.47269 * 299.99607 * 11 10 8 13 13 C 1.52994 * 109.47184 * 60.00206 * 12 11 10 14 14 F 1.39899 * 109.47062 * 59.99975 * 13 12 11 15 15 F 1.39893 * 109.47520 * 179.97438 * 13 12 11 16 16 C 1.52999 * 109.46858 * 267.84601 * 8 6 5 17 17 C 1.48381 * 105.79372 * 334.77878 * 5 4 2 18 18 C 1.54616 * 110.32354 * 122.18933 * 2 1 3 19 19 H 1.09002 * 110.74193 * 22.40619 * 18 2 1 20 20 C 1.53004 * 110.74122 * 259.07541 * 18 2 1 21 21 N 1.46497 * 109.47325 * 174.99853 * 20 18 2 22 22 C 1.36933 * 120.00027 * 179.97438 * 21 20 18 23 23 H 1.08004 * 120.00157 * 0.02562 * 22 21 20 24 24 C 1.38815 * 120.00160 * 180.02562 * 22 21 20 25 25 N 1.31616 * 120.00137 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99842 * 0.02562 * 24 22 21 27 27 H 1.48507 * 109.47363 * 89.99595 * 26 24 22 28 28 H 1.48502 * 109.47179 * 209.99535 * 26 24 22 29 29 H 1.48500 * 109.47292 * 329.99914 * 26 24 22 30 30 H 1.09001 * 109.47584 * 180.73736 * 1 2 3 31 31 H 1.09006 * 109.47308 * 300.73939 * 1 2 3 32 32 H 1.09003 * 109.46957 * 60.73291 * 1 2 3 33 33 H 1.08996 * 109.91665 * 1.77335 * 4 2 1 34 34 H 1.08995 * 109.91555 * 122.86462 * 4 2 1 35 35 H 1.08994 * 109.47006 * 299.99413 * 10 8 6 36 36 H 1.08998 * 109.47361 * 59.99521 * 10 8 6 37 37 H 1.08996 * 109.47532 * 60.00508 * 11 10 8 38 38 H 1.09004 * 109.46838 * 180.02562 * 11 10 8 39 39 H 1.08996 * 109.47138 * 180.02562 * 12 11 10 40 40 H 1.09008 * 109.47087 * 300.00409 * 12 11 10 41 41 H 1.08997 * 109.47597 * 300.00089 * 16 8 6 42 42 H 1.08994 * 109.47284 * 59.99897 * 16 8 6 43 43 H 1.08995 * 110.52529 * 280.62380 * 17 5 4 44 44 H 1.09006 * 110.82919 * 157.65493 * 17 5 4 45 45 H 1.08997 * 109.47374 * 295.00278 * 20 18 2 46 46 H 1.09003 * 109.46670 * 55.00023 * 20 18 2 47 47 H 0.96999 * 119.99849 * 0.02562 * 21 20 18 48 48 H 0.97005 * 120.00066 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0649 -0.7693 -1.2222 5 7 2.8304 -1.9223 -0.7122 6 6 3.0656 -3.0863 -1.3496 7 8 2.5515 -3.3027 -2.4265 8 6 3.9674 -4.1190 -0.7240 9 1 3.9373 -4.0184 0.3609 10 6 3.4918 -5.5183 -1.1199 11 6 4.4078 -6.5667 -0.4852 12 6 5.8411 -6.3570 -0.9777 13 6 6.3167 -4.9577 -0.5820 14 9 6.2785 -4.8287 0.8105 15 9 7.6274 -4.7661 -1.0317 16 6 5.4009 -3.9094 -1.2160 17 6 3.2835 -1.5369 0.6471 18 6 2.0670 -0.7724 1.2270 19 1 1.3173 -1.4684 1.6034 20 6 2.5095 0.1961 2.3258 21 7 2.9002 -0.5621 3.5168 22 6 3.3352 0.0967 4.6357 23 1 3.3899 1.1753 4.6402 24 6 3.7059 -0.6218 5.7641 25 7 4.1236 0.0115 6.8397 26 14 3.6120 -2.4874 5.7561 27 1 4.9032 -3.0461 5.2806 28 1 3.3382 -2.9752 7.1317 29 1 2.5200 -2.9242 4.8495 30 1 -0.3634 -1.0276 0.0132 31 1 -0.3634 0.5253 0.8833 32 1 -0.3633 0.5024 -0.8965 33 1 1.2334 -1.1175 -1.8348 34 1 2.7154 -0.1234 -1.8119 35 1 2.4706 -5.6676 -0.7693 36 1 3.5219 -5.6190 -2.2048 37 1 4.3780 -6.4663 0.5997 38 1 4.0692 -7.5636 -0.7676 39 1 6.4935 -7.1041 -0.5259 40 1 5.8708 -6.4575 -2.0627 41 1 5.4311 -4.0101 -2.3009 42 1 5.7397 -2.9126 -0.9341 43 1 4.1553 -0.8853 0.5890 44 1 3.5043 -2.4199 1.2470 45 1 3.3584 0.7820 1.9735 46 1 1.6850 0.8643 2.5747 47 1 2.8514 -1.5309 3.5127 48 1 4.3830 -0.4906 7.6281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106657967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:41 Heat of formation + Delta-G solvation = -161.371898 kcal Electronic energy + Delta-G solvation = -30087.085394 eV Core-core repulsion = 25811.119577 eV Total energy + Delta-G solvation = -4275.965817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.04716 -48.04720 -41.52666 -39.59673 -37.94173 -36.54323 -34.29511 -33.46362 -32.33938 -31.06034 -30.91063 -27.76366 -27.19503 -25.05321 -24.39477 -23.80737 -22.55103 -21.47629 -21.01270 -20.26839 -19.57509 -18.60123 -18.17908 -17.62602 -17.42800 -17.09064 -16.51261 -16.37601 -16.06282 -15.62923 -15.40177 -15.24733 -15.01576 -14.73322 -14.54618 -14.46979 -14.36720 -14.35852 -13.90202 -13.80951 -13.72455 -13.56204 -13.34912 -13.25294 -13.05887 -12.82387 -12.72835 -12.54316 -12.35078 -12.08576 -11.96157 -11.85735 -11.81834 -11.76142 -11.59740 -11.55349 -11.44949 -10.97027 -10.79383 -9.80204 -9.27837 -8.01118 -5.34263 1.37971 1.40072 1.42088 1.48455 1.80736 2.49431 2.70990 2.97524 3.21195 3.24366 3.31055 3.36304 3.43828 3.67293 3.72996 3.80170 3.90477 3.92250 4.06340 4.11799 4.20385 4.22543 4.31150 4.35703 4.45845 4.51674 4.64640 4.67691 4.70726 4.79079 4.81511 4.82350 4.84528 4.87236 4.98668 5.03448 5.06229 5.07539 5.17199 5.22344 5.30161 5.32357 5.48745 5.78460 6.22607 6.39652 6.99017 7.10043 7.85831 8.03917 9.20473 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.009092 B = 0.004635 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.953101 B = 6039.925867 C = 8205.313432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.101 0.899 4 C 0.108 3.892 5 N -0.618 5.618 6 C 0.540 3.460 7 O -0.570 6.570 8 C -0.102 4.102 9 H 0.098 0.902 10 C -0.104 4.104 11 C -0.114 4.114 12 C -0.154 4.154 13 C 0.284 3.716 14 F -0.211 7.211 15 F -0.210 7.210 16 C -0.142 4.142 17 C 0.105 3.895 18 C -0.098 4.098 19 H 0.081 0.919 20 C 0.168 3.832 21 N -0.757 5.757 22 C -0.231 4.231 23 H 0.059 0.941 24 C -0.061 4.061 25 N -0.984 5.984 26 Si 0.947 3.053 27 H -0.278 1.278 28 H -0.298 1.298 29 H -0.249 1.249 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.034 0.966 46 H 0.032 0.968 47 H 0.365 0.635 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 -11.797 -21.751 24.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.119 0.881 4 C -0.014 4.014 5 N -0.350 5.350 6 C 0.330 3.670 7 O -0.450 6.450 8 C -0.124 4.124 9 H 0.116 0.884 10 C -0.141 4.141 11 C -0.152 4.152 12 C -0.192 4.192 13 C 0.248 3.752 14 F -0.192 7.192 15 F -0.191 7.191 16 C -0.181 4.181 17 C -0.018 4.018 18 C -0.118 4.118 19 H 0.099 0.901 20 C 0.042 3.958 21 N -0.403 5.403 22 C -0.362 4.362 23 H 0.077 0.923 24 C -0.253 4.253 25 N -0.635 5.635 26 Si 0.774 3.226 27 H -0.204 1.204 28 H -0.225 1.225 29 H -0.173 1.173 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.198 0.802 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.919 -11.790 -22.255 25.258 hybrid contribution 0.419 -0.472 0.988 1.172 sum -1.501 -12.261 -21.267 24.595 Atomic orbital electron populations 1.21811 0.93141 1.01853 1.02780 1.22054 0.97198 0.99882 0.91790 0.88094 1.22223 0.95993 0.86566 0.96590 1.48994 1.52968 1.15115 1.17957 1.20317 0.81179 0.81142 0.84389 1.90669 1.52857 1.78440 1.23043 1.21283 0.93239 0.95695 1.02160 0.88396 1.21493 0.99850 0.90436 1.02357 1.21531 0.92077 1.00531 1.01019 1.22594 0.99091 0.92273 1.05242 1.21348 0.78954 0.99651 0.75279 1.93011 1.96448 1.97273 1.32493 1.92994 1.40394 1.96666 1.89015 1.22353 0.92742 0.99454 1.03526 1.22764 0.97540 0.99950 0.81534 1.22471 0.96953 0.97506 0.94838 0.90085 1.20754 0.97201 0.93166 0.84719 1.42713 1.80615 1.04881 1.12119 1.19030 1.34188 0.92117 0.90910 0.92337 1.25455 1.01822 1.02362 0.95647 1.69878 1.52666 1.36381 1.04572 0.85526 0.78847 0.81222 0.76973 1.20398 1.22519 1.17308 0.93207 0.92144 0.90819 0.90671 0.90459 0.90797 0.89961 0.91376 0.87569 0.88328 0.86790 0.86993 0.89572 0.89840 0.90148 0.94818 0.95037 0.80175 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.89 71.98 0.64 -1.85 16 2 C -0.09 -1.78 3.17 -9.91 -0.03 -1.81 16 3 H 0.10 1.83 7.85 -2.39 -0.02 1.81 16 4 C 0.11 2.23 6.63 86.53 0.57 2.80 16 5 N -0.62 -14.41 3.30 -808.71 -2.67 -17.08 16 6 C 0.54 13.26 6.92 87.66 0.61 13.87 16 7 O -0.57 -16.99 16.53 -3.02 -0.05 -17.04 16 8 C -0.10 -2.05 2.11 -11.54 -0.02 -2.08 16 9 H 0.10 2.06 6.01 -2.39 -0.01 2.05 16 10 C -0.10 -1.69 4.83 30.60 0.15 -1.54 16 11 C -0.11 -1.47 5.80 30.59 0.18 -1.29 16 12 C -0.15 -2.06 5.45 30.59 0.17 -1.89 16 13 C 0.28 5.59 2.10 30.58 0.06 5.65 16 14 F -0.21 -5.33 16.02 44.97 0.72 -4.61 16 15 F -0.21 -4.75 17.06 44.97 0.77 -3.98 16 16 C -0.14 -2.68 4.71 30.58 0.14 -2.54 16 17 C 0.10 2.55 6.28 86.68 0.54 3.09 16 18 C -0.10 -2.49 2.63 -9.58 -0.03 -2.51 16 19 H 0.08 2.16 7.86 -2.39 -0.02 2.14 16 20 C 0.17 5.63 5.58 86.38 0.48 6.12 16 21 N -0.76 -33.08 5.32 -343.45 -1.83 -34.91 16 22 C -0.23 -12.79 10.47 84.03 0.88 -11.91 16 23 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 24 C -0.06 -3.55 5.50 84.86 0.47 -3.09 16 25 N -0.98 -62.51 13.97 21.65 0.30 -62.21 16 26 Si 0.95 44.46 27.74 68.60 1.90 46.36 16 27 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 28 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 29 H -0.25 -10.34 6.52 99.48 0.65 -9.70 16 30 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16 31 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.61 7.55 -2.39 -0.02 1.59 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.35 7.85 -2.39 -0.02 1.33 16 37 H 0.07 1.02 7.80 -2.39 -0.02 1.00 16 38 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 2.04 7.94 -2.39 -0.02 2.02 16 44 H 0.08 2.01 6.49 -2.38 -0.02 1.99 16 45 H 0.03 1.14 7.99 -2.39 -0.02 1.12 16 46 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.37 15.21 5.53 -92.71 -0.51 14.69 16 48 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 Total: -1.00 -70.61 380.55 4.34 -66.27 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.38 Total: 26.18 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 4.81 Total: 1.02 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -4.20 Total: -114.21 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.05 Total: -17.04 kcal Atomic # 9 Polarization: -10.08 SS G_CDS: 1.49 Total: -8.59 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.90 Total: 46.36 kcal Total: -70.61 4.34 -66.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106657967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.097 kcal (2) G-P(sol) polarization free energy of solvation -70.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds