Wall clock time and date at job start Tue Mar 31 2020 17:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 110.29416 * 2 1 4 4 C 1.54007 * 110.32708 * 237.86520 * 2 1 3 5 5 N 1.47480 * 107.08435 * 242.30943 * 4 2 1 6 6 C 1.34779 * 127.03125 * 154.51301 * 5 4 2 7 7 O 1.21480 * 120.00078 * 180.02562 * 6 5 4 8 8 C 1.48455 * 120.00084 * 0.02922 * 6 5 4 9 9 C 1.39537 * 120.54942 * 180.27307 * 8 6 5 10 10 C 1.38760 * 118.26259 * 180.26175 * 9 8 6 11 11 N 1.32211 * 119.14657 * 359.46179 * 10 9 8 12 12 C 1.31882 * 121.03360 * 0.28239 * 11 10 9 13 13 C 1.50704 * 119.03557 * 180.02562 * 12 11 10 14 14 C 1.52995 * 117.50395 * 8.62337 * 13 12 11 15 15 C 1.53001 * 117.50170 * 299.99506 * 13 12 11 16 16 N 1.31575 * 121.91952 * 359.97438 * 12 11 10 17 17 C 1.48114 * 105.93636 * 334.78117 * 5 4 2 18 18 C 1.54596 * 103.42155 * 39.01904 * 17 5 4 19 19 H 1.09006 * 110.57336 * 81.17231 * 18 17 5 20 20 C 1.52996 * 110.99020 * 204.37564 * 18 17 5 21 21 N 1.46507 * 109.47231 * 288.65475 * 20 18 17 22 22 C 1.36938 * 120.00066 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99841 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00000 * 180.02562 * 22 21 20 25 25 N 1.31612 * 119.99936 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99849 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47265 * 90.00396 * 26 24 22 28 28 H 1.48503 * 109.46960 * 210.00226 * 26 24 22 29 29 H 1.48495 * 109.47390 * 329.99586 * 26 24 22 30 30 H 1.09001 * 109.47251 * 180.68381 * 1 2 3 31 31 H 1.09005 * 109.47210 * 300.68046 * 1 2 3 32 32 H 1.08995 * 109.47588 * 60.68081 * 1 2 3 33 33 H 1.08998 * 109.90921 * 122.94864 * 4 2 1 34 34 H 1.09003 * 110.06916 * 1.76500 * 4 2 1 35 35 H 1.07999 * 120.87286 * 0.02832 * 9 8 6 36 36 H 1.08002 * 120.42969 * 179.74377 * 10 9 8 37 37 H 1.09008 * 115.54248 * 154.32747 * 13 12 11 38 38 H 1.09001 * 117.49624 * 359.97438 * 14 13 12 39 39 H 1.08998 * 117.50085 * 145.01743 * 14 13 12 40 40 H 1.08994 * 117.50059 * 214.98341 * 15 13 12 41 41 H 1.08998 * 117.49286 * 359.97438 * 15 13 12 42 42 H 1.09000 * 110.66656 * 157.50647 * 17 5 4 43 43 H 1.09004 * 110.65963 * 280.62310 * 17 5 4 44 44 H 1.09004 * 109.47206 * 48.64987 * 20 18 17 45 45 H 1.09006 * 109.47402 * 168.65458 * 20 18 17 46 46 H 0.96997 * 119.99528 * 359.97438 * 21 20 18 47 47 H 0.97003 * 120.00036 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8297 -1.9203 -0.7103 6 6 3.0644 -3.0859 -1.3449 7 8 3.7150 -3.9545 -0.7989 8 6 2.5279 -3.3084 -2.7111 9 6 2.7591 -4.5130 -3.3764 10 6 2.2403 -4.6681 -4.6540 11 7 1.5411 -3.6818 -5.1891 12 6 1.3367 -2.5578 -4.5303 13 6 0.5324 -1.4632 -5.1831 14 6 -0.1746 -1.7946 -6.4988 15 6 1.0588 -0.8892 -6.5001 16 7 1.8136 -2.3646 -3.3193 17 6 3.2816 -1.5369 0.6471 18 6 2.0693 -0.7720 1.2262 19 1 1.3209 -1.4693 1.6031 20 6 2.5071 0.1966 2.3266 21 7 2.9001 -0.5619 3.5169 22 6 3.3318 0.0970 4.6370 23 1 3.3829 1.1758 4.6428 24 6 3.7046 -0.6216 5.7646 25 7 3.6428 -1.9362 5.7572 26 14 4.2928 0.2773 7.2928 27 1 3.1321 0.5737 8.1703 28 1 5.2627 -0.5753 8.0260 29 1 4.9514 1.5480 6.8970 30 1 -0.3634 -1.0276 0.0123 31 1 -0.3634 0.5244 0.8838 32 1 -0.3634 0.5032 -0.8960 33 1 2.7165 -0.1221 -1.8111 34 1 1.2352 -1.1171 -1.8377 35 1 3.3302 -5.3025 -2.9107 36 1 2.4017 -5.5844 -5.2024 37 1 0.0303 -0.7777 -4.5003 38 1 -0.0578 -2.8043 -6.8925 39 1 -1.1422 -1.3273 -6.6818 40 1 0.9026 0.1737 -6.6839 41 1 1.9870 -1.3030 -6.8941 42 1 3.4980 -2.4223 1.2449 43 1 4.1541 -0.8858 0.5924 44 1 3.3540 0.7864 1.9757 45 1 1.6799 0.8612 2.5760 46 1 2.8545 -1.5308 3.5114 47 1 3.9030 -2.4384 6.5453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106721222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:10 Heat of formation + Delta-G solvation = 62.378526 kcal Electronic energy + Delta-G solvation = -27973.895752 eV Core-core repulsion = 24158.321668 eV Total energy + Delta-G solvation = -3815.574085 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65910 -39.88659 -38.03541 -37.29409 -34.77792 -34.15839 -32.72366 -32.12535 -31.36765 -29.18154 -26.82851 -26.06782 -25.38174 -24.88592 -23.20840 -22.73102 -21.98439 -21.13542 -19.89878 -19.67853 -18.24227 -17.67519 -16.94659 -16.12334 -16.06035 -15.97193 -15.64340 -15.10028 -14.93229 -14.52035 -14.37256 -14.17612 -14.00064 -13.50085 -13.20972 -12.97858 -12.89110 -12.67162 -12.35936 -12.07501 -11.91754 -11.83962 -11.39562 -11.31935 -11.15632 -11.10427 -11.07168 -10.86279 -10.84009 -10.56429 -10.48990 -10.35136 -10.30843 -9.98488 -9.69220 -9.65379 -9.43164 -8.86515 -8.60548 -6.91028 -5.74063 -3.03422 0.19878 0.53749 2.56716 2.72801 3.23726 3.30266 3.45214 3.50024 3.52112 3.58639 3.79643 4.13408 4.40933 4.46480 4.58874 4.59675 4.61789 4.70583 4.77322 4.85460 4.98296 5.11801 5.26497 5.27279 5.40989 5.45383 5.54543 5.58996 5.61115 5.66706 5.69754 5.79712 5.86075 5.88575 5.98696 6.04687 6.08861 6.13693 6.22806 6.24651 6.41164 6.47130 6.54851 6.73236 6.86251 7.48070 7.61048 7.71517 7.99755 8.44157 9.55355 10.12611 10.46988 11.48634 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.021635 B = 0.002515 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.894877 B =11132.553255 C =12127.214477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 H 0.086 0.914 4 C 0.105 3.895 5 N -0.595 5.595 6 C 0.580 3.420 7 O -0.525 6.525 8 C 0.147 3.853 9 C -0.178 4.178 10 C 0.154 3.846 11 N -0.507 5.507 12 C 0.346 3.654 13 C -0.104 4.104 14 C -0.153 4.153 15 C -0.154 4.154 16 N -0.484 5.484 17 C 0.113 3.887 18 C -0.102 4.102 19 H 0.083 0.917 20 C 0.166 3.834 21 N -0.733 5.733 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.162 0.838 36 H 0.178 0.822 37 H 0.132 0.868 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.022 0.978 45 H 0.024 0.976 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 -0.234 -27.564 28.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 H 0.105 0.895 4 C -0.018 4.018 5 N -0.326 5.326 6 C 0.365 3.635 7 O -0.400 6.400 8 C -0.001 4.001 9 C -0.201 4.201 10 C -0.013 4.013 11 N -0.221 5.221 12 C 0.079 3.921 13 C -0.124 4.124 14 C -0.190 4.190 15 C -0.192 4.192 16 N -0.201 5.201 17 C -0.008 4.008 18 C -0.121 4.121 19 H 0.102 0.898 20 C 0.038 3.962 21 N -0.378 5.378 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.180 0.820 36 H 0.195 0.805 37 H 0.150 0.850 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.039 0.961 45 H 0.042 0.958 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.657 0.064 -27.564 28.608 hybrid contribution 0.893 -0.577 1.409 1.765 sum -6.764 -0.513 -26.155 27.020 Atomic orbital electron populations 1.21800 0.94228 1.01806 1.01762 1.22157 0.96384 0.99775 0.94011 0.89549 1.22549 0.96663 0.86499 0.96087 1.48663 1.51658 1.14230 1.18049 1.17345 0.80899 0.81573 0.83684 1.90837 1.40256 1.42835 1.66085 1.21689 0.92997 0.90578 0.94880 1.22985 1.01329 0.99187 0.96624 1.23329 0.89197 0.97126 0.91633 1.68037 1.14986 1.01322 1.37793 1.22186 0.92139 0.91169 0.86632 1.20656 1.02870 0.97792 0.91037 1.23035 0.96509 1.01967 0.97524 1.22993 0.98996 0.99876 0.97381 1.68318 1.09590 1.31855 1.10309 1.22633 0.97206 1.00342 0.80655 1.22517 0.96883 0.97911 0.94838 0.89836 1.20626 0.96610 0.92709 0.86294 1.42385 1.79265 1.05944 1.10167 1.19205 1.35928 0.91241 0.90784 0.91176 1.24752 1.02404 0.95488 0.98328 1.69661 1.54385 1.04543 1.29444 0.86193 0.78152 0.78467 0.83387 1.21751 1.21790 1.20774 0.92838 0.91989 0.92727 0.91731 0.88004 0.82049 0.80524 0.85042 0.87212 0.88033 0.87738 0.88584 0.89091 0.90285 0.96056 0.95809 0.78226 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.90 37.15 0.33 -1.19 16 2 C -0.10 -1.28 3.17 -89.25 -0.28 -1.57 16 3 H 0.09 1.00 7.85 -51.93 -0.41 0.59 16 4 C 0.10 1.29 5.76 -2.98 -0.02 1.27 16 5 N -0.59 -8.96 3.29 -170.86 -0.56 -9.52 16 6 C 0.58 9.15 7.90 -12.05 -0.10 9.05 16 7 O -0.52 -9.82 16.64 5.38 0.09 -9.73 16 8 C 0.15 1.89 6.76 -82.63 -0.56 1.33 16 9 C -0.18 -1.85 9.72 -38.90 -0.38 -2.22 16 10 C 0.15 1.29 11.31 -17.20 -0.19 1.09 16 11 N -0.51 -4.96 9.32 -10.74 -0.10 -5.06 16 12 C 0.35 3.59 7.31 -157.30 -1.15 2.44 16 13 C -0.10 -0.81 6.23 -91.77 -0.57 -1.38 16 14 C -0.15 -0.95 10.01 -26.73 -0.27 -1.21 16 15 C -0.15 -0.97 10.24 -26.73 -0.27 -1.24 16 16 N -0.48 -5.71 6.81 -7.32 -0.05 -5.76 16 17 C 0.11 1.89 6.44 -2.32 -0.01 1.88 16 18 C -0.10 -1.64 2.60 -88.93 -0.23 -1.87 16 19 H 0.08 1.45 7.86 -51.93 -0.41 1.04 16 20 C 0.17 3.23 5.58 -4.04 -0.02 3.21 16 21 N -0.73 -18.51 5.52 -59.90 -0.33 -18.84 16 22 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -28.60 13.06 55.49 0.72 -27.87 16 26 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.20 5.45 -51.93 -0.28 0.91 16 35 H 0.16 1.51 7.74 -52.49 -0.41 1.11 16 36 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.13 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.11 0.76 7.53 -51.93 -0.39 0.37 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.76 7.85 -51.93 -0.41 1.35 16 43 H 0.08 1.32 7.95 -51.93 -0.41 0.91 16 44 H 0.02 0.42 8.00 -51.93 -0.42 0.00 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.38 10.31 7.67 -40.82 -0.31 10.00 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 388.30 15.07 5.85 5.85 Total: -1.00 -33.54 388.30 -10.59 -44.13 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.22 Total: 7.03 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -3.97 Total: 2.19 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: -0.32 Total: -67.06 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.54 -10.59 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106721222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.512 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds