Wall clock time and date at job start Tue Mar 31 2020 17:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 110.29416 * 2 1 4 4 C 1.54007 * 110.32708 * 237.86520 * 2 1 3 5 5 N 1.47480 * 107.08435 * 242.30943 * 4 2 1 6 6 C 1.34779 * 127.03125 * 154.51301 * 5 4 2 7 7 O 1.21480 * 120.00078 * 180.02562 * 6 5 4 8 8 C 1.48455 * 120.00084 * 0.02922 * 6 5 4 9 9 C 1.39537 * 120.54942 * 180.27307 * 8 6 5 10 10 C 1.38760 * 118.26259 * 180.26175 * 9 8 6 11 11 N 1.32211 * 119.14657 * 359.46179 * 10 9 8 12 12 C 1.31882 * 121.03360 * 0.28239 * 11 10 9 13 13 C 1.50704 * 119.03557 * 180.02562 * 12 11 10 14 14 C 1.52995 * 117.50395 * 8.62337 * 13 12 11 15 15 C 1.53001 * 117.50170 * 299.99506 * 13 12 11 16 16 N 1.31575 * 121.91952 * 359.97438 * 12 11 10 17 17 C 1.48114 * 105.93636 * 334.78117 * 5 4 2 18 18 C 1.54596 * 103.42155 * 39.01904 * 17 5 4 19 19 H 1.09006 * 110.57336 * 81.17231 * 18 17 5 20 20 C 1.52996 * 110.99020 * 204.37564 * 18 17 5 21 21 N 1.46507 * 109.47231 * 288.65475 * 20 18 17 22 22 C 1.36938 * 120.00066 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99841 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00000 * 180.02562 * 22 21 20 25 25 N 1.31612 * 119.99936 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99849 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47265 * 90.00396 * 26 24 22 28 28 H 1.48503 * 109.46960 * 210.00226 * 26 24 22 29 29 H 1.48495 * 109.47390 * 329.99586 * 26 24 22 30 30 H 1.09001 * 109.47251 * 180.68381 * 1 2 3 31 31 H 1.09005 * 109.47210 * 300.68046 * 1 2 3 32 32 H 1.08995 * 109.47588 * 60.68081 * 1 2 3 33 33 H 1.08998 * 109.90921 * 122.94864 * 4 2 1 34 34 H 1.09003 * 110.06916 * 1.76500 * 4 2 1 35 35 H 1.07999 * 120.87286 * 0.02832 * 9 8 6 36 36 H 1.08002 * 120.42969 * 179.74377 * 10 9 8 37 37 H 1.09008 * 115.54248 * 154.32747 * 13 12 11 38 38 H 1.09001 * 117.49624 * 359.97438 * 14 13 12 39 39 H 1.08998 * 117.50085 * 145.01743 * 14 13 12 40 40 H 1.08994 * 117.50059 * 214.98341 * 15 13 12 41 41 H 1.08998 * 117.49286 * 359.97438 * 15 13 12 42 42 H 1.09000 * 110.66656 * 157.50647 * 17 5 4 43 43 H 1.09004 * 110.65963 * 280.62310 * 17 5 4 44 44 H 1.09004 * 109.47206 * 48.64987 * 20 18 17 45 45 H 1.09006 * 109.47402 * 168.65458 * 20 18 17 46 46 H 0.96997 * 119.99528 * 359.97438 * 21 20 18 47 47 H 0.97003 * 120.00036 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0649 -0.7682 -1.2229 5 7 2.8297 -1.9203 -0.7103 6 6 3.0644 -3.0859 -1.3449 7 8 3.7150 -3.9545 -0.7989 8 6 2.5279 -3.3084 -2.7111 9 6 2.7591 -4.5130 -3.3764 10 6 2.2403 -4.6681 -4.6540 11 7 1.5411 -3.6818 -5.1891 12 6 1.3367 -2.5578 -4.5303 13 6 0.5324 -1.4632 -5.1831 14 6 -0.1746 -1.7946 -6.4988 15 6 1.0588 -0.8892 -6.5001 16 7 1.8136 -2.3646 -3.3193 17 6 3.2816 -1.5369 0.6471 18 6 2.0693 -0.7720 1.2262 19 1 1.3209 -1.4693 1.6031 20 6 2.5071 0.1966 2.3266 21 7 2.9001 -0.5619 3.5169 22 6 3.3318 0.0970 4.6370 23 1 3.3829 1.1758 4.6428 24 6 3.7046 -0.6216 5.7646 25 7 3.6428 -1.9362 5.7572 26 14 4.2928 0.2773 7.2928 27 1 3.1321 0.5737 8.1703 28 1 5.2627 -0.5753 8.0260 29 1 4.9514 1.5480 6.8970 30 1 -0.3634 -1.0276 0.0123 31 1 -0.3634 0.5244 0.8838 32 1 -0.3634 0.5032 -0.8960 33 1 2.7165 -0.1221 -1.8111 34 1 1.2352 -1.1171 -1.8377 35 1 3.3302 -5.3025 -2.9107 36 1 2.4017 -5.5844 -5.2024 37 1 0.0303 -0.7777 -4.5003 38 1 -0.0578 -2.8043 -6.8925 39 1 -1.1422 -1.3273 -6.6818 40 1 0.9026 0.1737 -6.6839 41 1 1.9870 -1.3030 -6.8941 42 1 3.4980 -2.4223 1.2449 43 1 4.1541 -0.8858 0.5924 44 1 3.3540 0.7864 1.9757 45 1 1.6799 0.8612 2.5760 46 1 2.8545 -1.5308 3.5114 47 1 3.9030 -2.4384 6.5453 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106721222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:08 Heat of formation + Delta-G solvation = 42.040173 kcal Electronic energy + Delta-G solvation = -27974.777689 eV Core-core repulsion = 24158.321668 eV Total energy + Delta-G solvation = -3816.456022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.49973 -41.04757 -39.26077 -37.90089 -36.51005 -35.15972 -34.05475 -33.06847 -32.90564 -30.76448 -28.03827 -27.23776 -26.24278 -26.06688 -24.87921 -23.19088 -22.97458 -22.36254 -21.17999 -20.67222 -19.30436 -18.99112 -18.41608 -17.35853 -17.04062 -16.82150 -16.58611 -16.55016 -15.97376 -15.75965 -15.39796 -15.24469 -15.12812 -14.97730 -14.82715 -14.38015 -14.06498 -13.68622 -13.46338 -13.34148 -13.05062 -12.89520 -12.74884 -12.49364 -12.37358 -12.17241 -12.02664 -11.99105 -11.95265 -11.89432 -11.77609 -11.68260 -11.50992 -11.42203 -11.33388 -10.94242 -10.41679 -10.32026 -9.82129 -9.00598 -7.94765 -5.24286 -0.70371 -0.19629 1.46833 1.49021 1.49699 1.57460 1.59353 2.46839 2.52544 2.56158 2.86279 3.12661 3.27352 3.38876 3.55613 3.58232 3.62424 3.79336 3.90002 3.95537 4.12992 4.14088 4.17506 4.26022 4.38031 4.48609 4.50101 4.52950 4.55920 4.72645 4.79107 4.84833 4.85430 4.87269 5.00120 5.04598 5.06296 5.17100 5.20228 5.23702 5.26271 5.33626 5.36553 5.49229 5.53707 5.70060 6.26635 6.30302 6.70467 6.89663 7.32691 8.08489 8.30628 9.29027 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.021635 B = 0.002515 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.894877 B =11132.553255 C =12127.214477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.104 0.896 4 C 0.110 3.890 5 N -0.596 5.596 6 C 0.573 3.427 7 O -0.567 6.567 8 C 0.124 3.876 9 C -0.180 4.180 10 C 0.168 3.832 11 N -0.510 5.510 12 C 0.338 3.662 13 C -0.121 4.121 14 C -0.143 4.143 15 C -0.146 4.146 16 N -0.493 5.493 17 C 0.116 3.884 18 C -0.092 4.092 19 H 0.066 0.934 20 C 0.166 3.834 21 N -0.748 5.748 22 C -0.242 4.242 23 H 0.080 0.920 24 C -0.080 4.080 25 N -0.973 5.973 26 Si 0.975 3.025 27 H -0.286 1.286 28 H -0.298 1.298 29 H -0.267 1.267 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.166 0.834 36 H 0.220 0.780 37 H 0.141 0.859 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.086 0.914 42 H 0.054 0.946 43 H 0.079 0.921 44 H 0.030 0.970 45 H 0.033 0.967 46 H 0.371 0.629 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.765 1.554 -30.099 31.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.122 0.878 4 C -0.012 4.012 5 N -0.326 5.326 6 C 0.360 3.640 7 O -0.446 6.446 8 C -0.022 4.022 9 C -0.203 4.203 10 C 0.001 3.999 11 N -0.224 5.224 12 C 0.072 3.928 13 C -0.141 4.141 14 C -0.180 4.180 15 C -0.184 4.184 16 N -0.210 5.210 17 C -0.006 4.006 18 C -0.111 4.111 19 H 0.085 0.915 20 C 0.040 3.960 21 N -0.391 5.391 22 C -0.374 4.374 23 H 0.098 0.902 24 C -0.272 4.272 25 N -0.624 5.624 26 Si 0.804 3.196 27 H -0.213 1.213 28 H -0.225 1.225 29 H -0.191 1.191 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.184 0.816 36 H 0.236 0.764 37 H 0.158 0.842 38 H 0.120 0.880 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.047 0.953 45 H 0.051 0.949 46 H 0.202 0.798 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.864 1.926 -30.143 31.478 hybrid contribution 1.235 -1.140 2.064 2.661 sum -7.630 0.786 -28.079 29.108 Atomic orbital electron populations 1.21780 0.92768 1.01581 1.03055 1.22165 0.97520 0.99945 0.91604 0.87772 1.22692 0.96894 0.85553 0.96046 1.48748 1.51649 1.14989 1.17252 1.17886 0.80269 0.81036 0.84785 1.90798 1.42213 1.44126 1.67473 1.21336 0.94851 0.92241 0.93804 1.23155 1.01405 0.98389 0.97399 1.23995 0.87256 0.97972 0.90690 1.68165 1.15096 1.01470 1.37699 1.22732 0.91895 0.92035 0.86180 1.20827 1.03676 0.97782 0.91803 1.23095 0.97378 1.01732 0.95819 1.23057 0.98675 1.00936 0.95778 1.68230 1.09947 1.31690 1.11087 1.22416 0.97728 0.98860 0.81635 1.22329 0.96109 0.97312 0.95389 0.91531 1.20782 0.96888 0.93039 0.85293 1.42640 1.79321 1.05685 1.11416 1.19661 1.34364 0.91838 0.91510 0.90184 1.25622 1.03636 0.96253 1.01664 1.69839 1.56311 1.06196 1.30015 0.85110 0.77446 0.77593 0.79443 1.21312 1.22505 1.19134 0.93820 0.92332 0.89810 0.90329 0.87010 0.81645 0.76382 0.84176 0.88041 0.86113 0.85879 0.89521 0.92750 0.90323 0.95252 0.94873 0.79752 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.90 71.98 0.64 -2.02 16 2 C -0.09 -2.15 3.17 -9.91 -0.03 -2.18 16 3 H 0.10 2.10 7.85 -2.39 -0.02 2.08 16 4 C 0.11 2.55 5.76 86.53 0.50 3.04 16 5 N -0.60 -18.36 3.29 -812.79 -2.68 -21.04 16 6 C 0.57 18.81 7.90 86.97 0.69 19.50 16 7 O -0.57 -22.61 16.64 -3.65 -0.06 -22.67 16 8 C 0.12 3.20 6.76 41.99 0.28 3.48 16 9 C -0.18 -3.62 9.72 22.71 0.22 -3.40 16 10 C 0.17 2.45 11.31 84.76 0.96 3.40 16 11 N -0.51 -8.91 9.32 -187.88 -1.75 -10.67 16 12 C 0.34 6.43 7.31 138.79 1.01 7.45 16 13 C -0.12 -1.60 6.23 -11.54 -0.07 -1.67 16 14 C -0.14 -1.38 10.01 30.59 0.31 -1.07 16 15 C -0.15 -1.45 10.24 30.60 0.31 -1.14 16 16 N -0.49 -11.10 6.81 -177.07 -1.21 -12.30 16 17 C 0.12 4.07 6.44 86.61 0.56 4.63 16 18 C -0.09 -2.98 2.60 -9.70 -0.03 -3.00 16 19 H 0.07 2.40 7.86 -2.38 -0.02 2.38 16 20 C 0.17 6.46 5.58 86.38 0.48 6.94 16 21 N -0.75 -38.60 5.52 -343.43 -1.90 -40.50 16 22 C -0.24 -13.64 9.99 84.03 0.84 -12.81 16 23 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 24 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 25 N -0.97 -61.53 13.06 21.65 0.28 -61.24 16 26 Si 0.98 46.93 29.55 68.60 2.03 48.95 16 27 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 28 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 29 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.11 2.43 5.45 -2.39 -0.01 2.42 16 35 H 0.17 3.10 7.74 -2.91 -0.02 3.08 16 36 H 0.22 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.14 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.10 1.17 7.53 -2.39 -0.02 1.16 16 39 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.05 2.29 7.85 -2.39 -0.02 2.27 16 43 H 0.08 2.73 7.95 -2.38 -0.02 2.71 16 44 H 0.03 1.12 8.00 -2.38 -0.02 1.10 16 45 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 46 H 0.37 20.85 7.67 -92.71 -0.71 20.14 16 47 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -75.07 388.30 2.13 -72.94 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.27 Total: 29.58 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 7.14 Total: 16.95 kcal Atomic # 7 Polarization: -138.50 SS G_CDS: -7.25 Total: -145.74 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.06 Total: -22.67 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -75.07 2.13 -72.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106721222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.978 kcal (2) G-P(sol) polarization free energy of solvation -75.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds