Wall clock time and date at job start Tue Mar 31 2020 17:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.65183 * 2 1 4 4 C 1.54597 * 110.99006 * 236.84565 * 2 1 3 5 5 N 1.48115 * 103.42050 * 204.37582 * 4 2 1 6 6 C 1.34782 * 127.02995 * 219.28517 * 5 4 2 7 7 O 1.21551 * 119.99757 * 183.50591 * 6 5 4 8 8 C 1.47835 * 120.00008 * 3.23554 * 6 5 4 9 9 C 1.39947 * 120.93609 * 325.94702 * 8 6 5 10 10 N 1.32151 * 118.91814 * 179.76944 * 9 8 6 11 11 C 1.31870 * 120.97098 * 0.51584 * 10 9 8 12 12 C 1.50699 * 118.95557 * 179.75032 * 11 10 9 13 13 C 1.53001 * 117.49384 * 8.72957 * 12 11 10 14 14 C 1.53004 * 117.49759 * 300.07125 * 12 11 10 15 15 N 1.31871 * 122.09302 * 359.73679 * 11 10 9 16 16 C 1.32148 * 120.96729 * 359.97438 * 15 11 10 17 17 C 1.47480 * 105.93559 * 39.02188 * 5 4 2 18 18 C 1.54009 * 107.08272 * 334.78007 * 17 5 4 19 19 H 1.09000 * 110.32363 * 120.19714 * 18 17 5 20 20 C 1.53004 * 110.32694 * 242.30956 * 18 17 5 21 21 N 1.46500 * 109.47226 * 293.54873 * 20 18 17 22 22 C 1.36939 * 120.00122 * 180.02562 * 21 20 18 23 23 H 1.07994 * 119.99428 * 359.97438 * 22 21 20 24 24 C 1.38814 * 119.99910 * 180.02562 * 22 21 20 25 25 N 1.31616 * 119.99950 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99794 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47490 * 89.99623 * 26 24 22 28 28 H 1.48499 * 109.46937 * 210.00146 * 26 24 22 29 29 H 1.48507 * 109.47190 * 329.99754 * 26 24 22 30 30 H 1.09000 * 109.47418 * 296.81157 * 1 2 3 31 31 H 1.09004 * 109.46875 * 56.80966 * 1 2 3 32 32 H 1.09000 * 109.46885 * 176.80371 * 1 2 3 33 33 H 1.09002 * 110.61816 * 85.85994 * 4 2 1 34 34 H 1.09003 * 110.54445 * 322.85182 * 4 2 1 35 35 H 1.07996 * 120.54116 * 0.02562 * 9 8 6 36 36 H 1.08999 * 115.54866 * 154.39572 * 12 11 10 37 37 H 1.08998 * 117.50390 * 0.02562 * 13 12 11 38 38 H 1.09003 * 117.49764 * 145.02153 * 13 12 11 39 39 H 1.08997 * 117.49486 * 214.97828 * 14 12 11 40 40 H 1.08998 * 117.49575 * 359.97438 * 14 12 11 41 41 H 1.07994 * 120.53791 * 179.97438 * 16 15 11 42 42 H 1.08999 * 109.91286 * 94.14170 * 17 5 4 43 43 H 1.09000 * 109.91288 * 215.22828 * 17 5 4 44 44 H 1.09000 * 109.46804 * 53.54209 * 20 18 17 45 45 H 1.08994 * 109.47302 * 173.54449 * 20 18 17 46 46 H 0.96998 * 119.99753 * 0.02562 * 21 20 18 47 47 H 0.96998 * 119.99721 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0838 -0.7894 -1.2084 5 7 3.4322 -1.2056 -0.7584 6 6 4.5594 -1.2405 -1.4964 7 8 5.5898 -1.6663 -1.0123 8 6 4.5411 -0.7664 -2.8966 9 6 3.4094 -0.9419 -3.7009 10 7 3.4349 -0.4985 -4.9455 11 6 4.5083 0.0918 -5.4337 12 6 4.4897 0.5750 -6.8610 13 6 3.1520 0.5358 -7.6026 14 6 4.2534 -0.4667 -7.9565 15 7 5.5974 0.2729 -4.7126 16 6 5.6570 -0.1344 -3.4568 17 6 3.2903 -1.5680 0.6641 18 6 2.0775 -0.7915 1.2100 19 1 1.3221 -1.4830 1.5833 20 6 2.5153 0.1660 2.3202 21 7 2.9825 -0.6057 3.4746 22 6 3.4266 0.0417 4.5966 23 1 3.4328 1.1211 4.6303 24 6 3.8698 -0.6895 5.6901 25 7 3.8627 -2.0050 5.6487 26 14 4.4749 0.1936 7.2209 27 1 3.3354 0.4173 8.1464 28 1 5.5054 -0.6356 7.8959 29 1 5.0650 1.5012 6.8373 30 1 -0.3634 0.4635 0.9172 31 1 -0.3633 0.5626 -0.8601 32 1 -0.3633 -1.0261 -0.0573 33 1 2.1525 -0.1479 -2.0870 34 1 1.4613 -1.6601 -1.4143 35 1 2.5280 -1.4280 -3.3095 36 1 5.1667 1.3987 -7.0873 37 1 2.2854 0.1609 -7.0581 38 1 2.9492 1.3335 -8.3172 39 1 4.7748 -0.3280 -8.9036 40 1 4.1119 -1.5015 -7.6448 41 1 6.5526 0.0172 -2.8727 42 1 3.1179 -2.6401 0.7587 43 1 4.1909 -1.2874 1.2103 44 1 3.3238 0.7996 1.9556 45 1 1.6713 0.7885 2.6169 46 1 2.9773 -1.5752 3.4441 47 1 4.1720 -2.5159 6.4130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106735257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:13 Heat of formation + Delta-G solvation = 59.346023 kcal Electronic energy + Delta-G solvation = -27736.725927 eV Core-core repulsion = 23921.020343 eV Total energy + Delta-G solvation = -3815.705584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68766 -40.02174 -38.06125 -37.32230 -34.81845 -34.17007 -33.07029 -32.20041 -31.41526 -29.13105 -26.91375 -26.31853 -25.16192 -24.87606 -23.33647 -22.76441 -21.91670 -21.18072 -20.34253 -19.62773 -18.29768 -17.52810 -17.24543 -16.91319 -16.40811 -15.65620 -15.42139 -15.15326 -14.79221 -14.61605 -14.46169 -14.05554 -13.85126 -13.54106 -13.41292 -12.98928 -12.80050 -12.71275 -12.65323 -12.13913 -11.96346 -11.92413 -11.74867 -11.51346 -11.33525 -11.23318 -11.08716 -10.91637 -10.89061 -10.66276 -10.55356 -10.37522 -10.04322 -10.00843 -9.69386 -9.65856 -9.61917 -8.89616 -8.72723 -6.94138 -5.77007 -3.06152 0.13210 0.66217 2.52544 2.74646 3.15110 3.31323 3.43889 3.49116 3.50971 3.56202 3.76612 4.08850 4.17371 4.40902 4.42645 4.52360 4.57215 4.57695 4.62272 4.73990 4.84657 4.95456 5.17915 5.21439 5.23965 5.35678 5.39055 5.39932 5.44617 5.56501 5.63150 5.65857 5.70230 5.78853 5.87181 5.92134 6.01113 6.08408 6.11584 6.18303 6.35382 6.38326 6.49893 6.67666 6.81162 7.40290 7.63672 7.69565 7.98042 8.41462 9.52871 10.08960 10.43493 11.45724 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.002392 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.782489 B =11703.285954 C =12399.495865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.085 0.915 4 C 0.091 3.909 5 N -0.611 5.611 6 C 0.583 3.417 7 O -0.523 6.523 8 C -0.236 4.236 9 C 0.180 3.820 10 N -0.518 5.518 11 C 0.362 3.638 12 C -0.108 4.108 13 C -0.152 4.152 14 C -0.154 4.154 15 N -0.514 5.514 16 C 0.209 3.791 17 C 0.113 3.887 18 C -0.102 4.102 19 H 0.089 0.911 20 C 0.163 3.837 21 N -0.732 5.732 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.178 0.822 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.181 0.819 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.019 0.981 45 H 0.023 0.977 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.844 3.554 -27.110 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.103 0.897 4 C -0.032 4.032 5 N -0.343 5.343 6 C 0.369 3.631 7 O -0.399 6.399 8 C -0.243 4.243 9 C 0.013 3.987 10 N -0.232 5.232 11 C 0.097 3.903 12 C -0.128 4.128 13 C -0.189 4.189 14 C -0.192 4.192 15 N -0.227 5.227 16 C 0.042 3.958 17 C -0.009 4.009 18 C -0.122 4.122 19 H 0.107 0.893 20 C 0.035 3.965 21 N -0.377 5.377 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.195 0.805 36 H 0.150 0.850 37 H 0.130 0.870 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.198 0.802 42 H 0.087 0.913 43 H 0.112 0.888 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.132 3.763 -27.707 28.428 hybrid contribution 0.392 -0.196 1.973 2.022 sum -4.740 3.566 -25.733 26.408 Atomic orbital electron populations 1.21736 0.93586 1.02141 1.02304 1.22225 0.96237 0.99758 0.93679 0.89709 1.22916 0.83206 0.98889 0.98167 1.48700 1.07720 1.65249 1.12680 1.17336 0.82627 0.78964 0.84156 1.90859 1.30725 1.46188 1.72158 1.21755 0.98405 1.06805 0.97378 1.23738 0.96307 0.90424 0.88251 1.68168 1.28666 1.12443 1.13891 1.22379 0.84170 0.88442 0.95327 1.20703 1.03351 1.03245 0.85463 1.23062 0.92368 1.01760 1.01730 1.23016 1.02478 0.95895 0.97788 1.68271 1.27491 1.20370 1.06577 1.23466 0.96552 0.86071 0.89694 1.22256 1.00593 0.99099 0.78938 1.22406 0.96514 0.98022 0.95232 0.89266 1.20694 0.96203 0.92789 0.86829 1.42357 1.77216 1.05688 1.12402 1.19195 1.34798 0.91225 0.91972 0.91234 1.24743 1.02165 0.95483 0.98506 1.69651 1.53291 1.04131 1.30970 0.86188 0.78181 0.78469 0.83337 1.21733 1.21742 1.20779 0.91576 0.92625 0.92278 0.90306 0.90114 0.80495 0.85043 0.87040 0.87981 0.87717 0.88464 0.80178 0.91293 0.88804 0.96306 0.95956 0.78235 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.17 37.16 0.34 -0.90 16 2 C -0.10 -1.08 3.18 -88.93 -0.28 -1.36 16 3 H 0.08 0.98 7.87 -51.93 -0.41 0.57 16 4 C 0.09 0.88 4.77 -2.31 -0.01 0.87 16 5 N -0.61 -8.19 3.29 -171.09 -0.56 -8.75 16 6 C 0.58 8.58 7.63 -12.33 -0.09 8.48 16 7 O -0.52 -9.81 17.24 5.32 0.09 -9.72 16 8 C -0.24 -2.82 5.62 -104.69 -0.59 -3.41 16 9 C 0.18 1.80 9.08 -16.77 -0.15 1.65 16 10 N -0.52 -5.38 9.32 -10.39 -0.10 -5.48 16 11 C 0.36 3.88 7.31 -157.06 -1.15 2.74 16 12 C -0.11 -0.86 6.23 -91.77 -0.57 -1.43 16 13 C -0.15 -0.94 10.01 -26.69 -0.27 -1.21 16 14 C -0.15 -0.97 10.24 -26.69 -0.27 -1.24 16 15 N -0.51 -6.07 10.31 -10.39 -0.11 -6.18 16 16 C 0.21 2.48 10.92 -16.78 -0.18 2.30 16 17 C 0.11 1.78 6.29 -2.98 -0.02 1.76 16 18 C -0.10 -1.50 2.64 -89.24 -0.24 -1.73 16 19 H 0.09 1.29 7.85 -51.93 -0.41 0.88 16 20 C 0.16 3.13 5.35 -4.04 -0.02 3.10 16 21 N -0.73 -18.15 5.33 -59.91 -0.32 -18.47 16 22 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 26 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 33 H 0.08 0.65 5.60 -51.93 -0.29 0.36 16 34 H 0.08 0.63 7.95 -51.93 -0.41 0.21 16 35 H 0.18 1.35 5.80 -52.49 -0.30 1.04 16 36 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.11 0.78 7.53 -51.93 -0.39 0.39 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.18 1.95 8.04 -52.49 -0.42 1.53 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 1.85 7.53 -51.93 -0.39 1.45 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.38 9.96 7.51 -40.82 -0.31 9.65 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -33.76 386.57 -10.33 -44.09 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.11 Total: 6.35 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -3.75 Total: 2.26 kcal Atomic # 7 Polarization: -66.00 SS G_CDS: -0.36 Total: -66.36 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.76 -10.33 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106735257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.434 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds