Wall clock time and date at job start Tue Mar 31 2020 17:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.65183 * 2 1 4 4 C 1.54597 * 110.99006 * 236.84565 * 2 1 3 5 5 N 1.48115 * 103.42050 * 204.37582 * 4 2 1 6 6 C 1.34782 * 127.02995 * 219.28517 * 5 4 2 7 7 O 1.21551 * 119.99757 * 183.50591 * 6 5 4 8 8 C 1.47835 * 120.00008 * 3.23554 * 6 5 4 9 9 C 1.39947 * 120.93609 * 325.94702 * 8 6 5 10 10 N 1.32151 * 118.91814 * 179.76944 * 9 8 6 11 11 C 1.31870 * 120.97098 * 0.51584 * 10 9 8 12 12 C 1.50699 * 118.95557 * 179.75032 * 11 10 9 13 13 C 1.53001 * 117.49384 * 8.72957 * 12 11 10 14 14 C 1.53004 * 117.49759 * 300.07125 * 12 11 10 15 15 N 1.31871 * 122.09302 * 359.73679 * 11 10 9 16 16 C 1.32148 * 120.96729 * 359.97438 * 15 11 10 17 17 C 1.47480 * 105.93559 * 39.02188 * 5 4 2 18 18 C 1.54009 * 107.08272 * 334.78007 * 17 5 4 19 19 H 1.09000 * 110.32363 * 120.19714 * 18 17 5 20 20 C 1.53004 * 110.32694 * 242.30956 * 18 17 5 21 21 N 1.46500 * 109.47226 * 293.54873 * 20 18 17 22 22 C 1.36939 * 120.00122 * 180.02562 * 21 20 18 23 23 H 1.07994 * 119.99428 * 359.97438 * 22 21 20 24 24 C 1.38814 * 119.99910 * 180.02562 * 22 21 20 25 25 N 1.31616 * 119.99950 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99794 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47490 * 89.99623 * 26 24 22 28 28 H 1.48499 * 109.46937 * 210.00146 * 26 24 22 29 29 H 1.48507 * 109.47190 * 329.99754 * 26 24 22 30 30 H 1.09000 * 109.47418 * 296.81157 * 1 2 3 31 31 H 1.09004 * 109.46875 * 56.80966 * 1 2 3 32 32 H 1.09000 * 109.46885 * 176.80371 * 1 2 3 33 33 H 1.09002 * 110.61816 * 85.85994 * 4 2 1 34 34 H 1.09003 * 110.54445 * 322.85182 * 4 2 1 35 35 H 1.07996 * 120.54116 * 0.02562 * 9 8 6 36 36 H 1.08999 * 115.54866 * 154.39572 * 12 11 10 37 37 H 1.08998 * 117.50390 * 0.02562 * 13 12 11 38 38 H 1.09003 * 117.49764 * 145.02153 * 13 12 11 39 39 H 1.08997 * 117.49486 * 214.97828 * 14 12 11 40 40 H 1.08998 * 117.49575 * 359.97438 * 14 12 11 41 41 H 1.07994 * 120.53791 * 179.97438 * 16 15 11 42 42 H 1.08999 * 109.91286 * 94.14170 * 17 5 4 43 43 H 1.09000 * 109.91288 * 215.22828 * 17 5 4 44 44 H 1.09000 * 109.46804 * 53.54209 * 20 18 17 45 45 H 1.08994 * 109.47302 * 173.54449 * 20 18 17 46 46 H 0.96998 * 119.99753 * 0.02562 * 21 20 18 47 47 H 0.96998 * 119.99721 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0838 -0.7894 -1.2084 5 7 3.4322 -1.2056 -0.7584 6 6 4.5594 -1.2405 -1.4964 7 8 5.5898 -1.6663 -1.0123 8 6 4.5411 -0.7664 -2.8966 9 6 3.4094 -0.9419 -3.7009 10 7 3.4349 -0.4985 -4.9455 11 6 4.5083 0.0918 -5.4337 12 6 4.4897 0.5750 -6.8610 13 6 3.1520 0.5358 -7.6026 14 6 4.2534 -0.4667 -7.9565 15 7 5.5974 0.2729 -4.7126 16 6 5.6570 -0.1344 -3.4568 17 6 3.2903 -1.5680 0.6641 18 6 2.0775 -0.7915 1.2100 19 1 1.3221 -1.4830 1.5833 20 6 2.5153 0.1660 2.3202 21 7 2.9825 -0.6057 3.4746 22 6 3.4266 0.0417 4.5966 23 1 3.4328 1.1211 4.6303 24 6 3.8698 -0.6895 5.6901 25 7 3.8627 -2.0050 5.6487 26 14 4.4749 0.1936 7.2209 27 1 3.3354 0.4173 8.1464 28 1 5.5054 -0.6356 7.8959 29 1 5.0650 1.5012 6.8373 30 1 -0.3634 0.4635 0.9172 31 1 -0.3633 0.5626 -0.8601 32 1 -0.3633 -1.0261 -0.0573 33 1 2.1525 -0.1479 -2.0870 34 1 1.4613 -1.6601 -1.4143 35 1 2.5280 -1.4280 -3.3095 36 1 5.1667 1.3987 -7.0873 37 1 2.2854 0.1609 -7.0581 38 1 2.9492 1.3335 -8.3172 39 1 4.7748 -0.3280 -8.9036 40 1 4.1119 -1.5015 -7.6448 41 1 6.5526 0.0172 -2.8727 42 1 3.1179 -2.6401 0.7587 43 1 4.1909 -1.2874 1.2103 44 1 3.3238 0.7996 1.9556 45 1 1.6713 0.7885 2.6169 46 1 2.9773 -1.5752 3.4441 47 1 4.1720 -2.5159 6.4130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106735257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:13 Heat of formation + Delta-G solvation = 37.715948 kcal Electronic energy + Delta-G solvation = -27737.663877 eV Core-core repulsion = 23921.020343 eV Total energy + Delta-G solvation = -3816.643534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.56390 -41.09997 -39.22142 -37.95071 -36.53062 -35.12887 -34.31391 -33.11358 -33.08702 -30.62676 -27.95573 -27.36583 -26.39990 -25.77145 -25.02193 -23.22753 -22.93175 -22.22556 -21.36877 -20.82244 -19.30331 -19.10148 -18.28655 -17.92943 -17.55670 -16.74812 -16.61243 -16.27506 -15.98092 -15.64498 -15.41950 -15.27054 -15.16044 -15.00268 -14.74427 -14.21700 -13.94845 -13.71539 -13.45445 -13.27080 -13.20913 -12.94879 -12.78498 -12.68483 -12.54154 -12.34751 -12.18404 -12.12570 -11.97203 -11.96212 -11.82810 -11.52364 -11.41904 -11.38582 -11.17834 -10.96342 -10.53227 -10.44199 -9.87355 -9.02272 -7.97365 -5.26051 -0.74449 -0.18688 1.43282 1.44904 1.46924 1.55096 1.68573 2.37218 2.53692 2.58697 2.80127 3.10535 3.17897 3.28389 3.36179 3.46788 3.59085 3.71373 3.80734 3.86345 3.91961 4.08951 4.15624 4.18699 4.30113 4.38712 4.43545 4.53573 4.56869 4.62230 4.76081 4.80819 4.81508 4.89709 4.91268 4.95729 5.06282 5.07877 5.17999 5.19740 5.24950 5.33435 5.37082 5.46529 5.54711 5.64685 6.25024 6.31704 6.79711 6.84076 7.31559 8.06909 8.29879 9.25968 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.002392 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.782489 B =11703.285954 C =12399.495865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 H 0.078 0.922 4 C 0.092 3.908 5 N -0.608 5.608 6 C 0.582 3.418 7 O -0.577 6.577 8 C -0.247 4.247 9 C 0.194 3.806 10 N -0.518 5.518 11 C 0.358 3.642 12 C -0.129 4.129 13 C -0.138 4.138 14 C -0.146 4.146 15 N -0.530 5.530 16 C 0.203 3.797 17 C 0.117 3.883 18 C -0.091 4.091 19 H 0.096 0.904 20 C 0.163 3.837 21 N -0.744 5.744 22 C -0.246 4.246 23 H 0.073 0.927 24 C -0.075 4.075 25 N -0.967 5.967 26 Si 0.973 3.027 27 H -0.283 1.283 28 H -0.296 1.296 29 H -0.272 1.272 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.207 0.793 36 H 0.139 0.861 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.179 0.821 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.006 0.994 45 H 0.030 0.970 46 H 0.375 0.625 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 4.581 -29.613 31.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.110 4.110 3 H 0.097 0.903 4 C -0.029 4.029 5 N -0.339 5.339 6 C 0.370 3.630 7 O -0.457 6.457 8 C -0.254 4.254 9 C 0.027 3.973 10 N -0.231 5.231 11 C 0.094 3.906 12 C -0.149 4.149 13 C -0.176 4.176 14 C -0.184 4.184 15 N -0.243 5.243 16 C 0.036 3.964 17 C -0.006 4.006 18 C -0.111 4.111 19 H 0.115 0.885 20 C 0.036 3.964 21 N -0.387 5.387 22 C -0.378 4.378 23 H 0.091 0.909 24 C -0.268 4.268 25 N -0.618 5.618 26 Si 0.802 3.198 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.197 1.197 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.132 0.868 35 H 0.223 0.777 36 H 0.157 0.843 37 H 0.123 0.877 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.106 0.894 41 H 0.196 0.804 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.024 0.976 45 H 0.048 0.952 46 H 0.207 0.793 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.427 4.842 -30.256 31.528 hybrid contribution 1.080 -0.468 2.654 2.903 sum -6.346 4.374 -27.602 28.658 Atomic orbital electron populations 1.21720 0.91254 1.03364 1.02911 1.22205 0.97974 0.98876 0.91938 0.90344 1.23232 0.81093 1.00434 0.98146 1.48741 1.09108 1.64510 1.11572 1.17742 0.82062 0.78089 0.85087 1.90825 1.32710 1.48663 1.73515 1.21480 0.99606 1.08368 0.95967 1.24135 0.96225 0.89212 0.87760 1.68309 1.28397 1.12657 1.13733 1.23003 0.83802 0.87496 0.96342 1.20895 1.05244 1.04406 0.84350 1.23144 0.91224 1.02034 1.01156 1.23103 1.02481 0.95096 0.97725 1.68342 1.28280 1.21190 1.06459 1.23536 0.96728 0.86098 0.90011 1.22015 0.98958 0.99365 0.80237 1.22280 0.96047 0.97528 0.95218 0.88539 1.20827 0.95610 0.93363 0.86580 1.42563 1.77259 1.05596 1.13271 1.19596 1.33707 0.91602 0.92913 0.90891 1.25568 1.03272 0.96263 1.01675 1.69805 1.54860 1.05514 1.31614 0.85154 0.77515 0.77516 0.79662 1.20978 1.22276 1.19734 0.92686 0.90119 0.91003 0.88074 0.86818 0.77684 0.84348 0.87697 0.85826 0.85704 0.89413 0.80353 0.91114 0.93611 0.97625 0.95162 0.79299 0.93982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.17 71.98 0.66 -1.23 16 2 C -0.09 -1.75 3.18 -9.70 -0.03 -1.78 16 3 H 0.08 1.66 7.87 -2.39 -0.02 1.64 16 4 C 0.09 1.48 4.77 86.61 0.41 1.90 16 5 N -0.61 -15.99 3.29 -813.49 -2.68 -18.67 16 6 C 0.58 17.44 7.63 86.78 0.66 18.10 16 7 O -0.58 -22.95 17.24 -3.88 -0.07 -23.01 16 8 C -0.25 -5.76 5.62 -19.91 -0.11 -5.88 16 9 C 0.19 3.42 9.08 85.06 0.77 4.19 16 10 N -0.52 -9.56 9.32 -186.80 -1.74 -11.30 16 11 C 0.36 7.14 7.31 138.70 1.01 8.15 16 12 C -0.13 -1.79 6.23 -11.54 -0.07 -1.86 16 13 C -0.14 -1.31 10.01 30.62 0.31 -1.00 16 14 C -0.15 -1.48 10.24 30.62 0.31 -1.17 16 15 N -0.53 -12.25 10.31 -186.80 -1.93 -14.18 16 16 C 0.20 4.87 10.92 85.06 0.93 5.80 16 17 C 0.12 3.79 6.29 86.53 0.54 4.33 16 18 C -0.09 -2.62 2.64 -9.90 -0.03 -2.65 16 19 H 0.10 2.68 7.85 -2.39 -0.02 2.66 16 20 C 0.16 6.34 5.35 86.38 0.46 6.81 16 21 N -0.74 -37.91 5.33 -343.45 -1.83 -39.74 16 22 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 23 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 24 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 25 N -0.97 -60.08 13.06 21.65 0.28 -59.80 16 26 Si 0.97 47.07 29.55 68.60 2.03 49.10 16 27 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 28 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 29 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.07 0.86 8.11 -2.39 -0.02 0.84 16 33 H 0.10 1.26 5.60 -2.39 -0.01 1.24 16 34 H 0.11 1.20 7.95 -2.39 -0.02 1.18 16 35 H 0.21 2.31 5.80 -2.91 -0.02 2.29 16 36 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.10 1.17 7.53 -2.39 -0.02 1.15 16 38 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.18 4.15 8.04 -2.91 -0.02 4.12 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.05 1.93 7.53 -2.39 -0.02 1.91 16 44 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.37 20.19 7.51 -92.71 -0.70 19.50 16 47 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -76.47 386.57 1.50 -74.97 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.29 Total: 26.03 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 7.14 Total: 16.61 kcal Atomic # 7 Polarization: -135.80 SS G_CDS: -7.90 Total: -143.69 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.07 Total: -23.01 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -76.47 1.50 -74.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106735257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.683 kcal (2) G-P(sol) polarization free energy of solvation -76.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds