Wall clock time and date at job start Tue Mar 31 2020 17:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.65608 * 2 1 4 4 C 1.54592 * 110.83763 * 236.74951 * 2 1 3 5 5 N 1.48111 * 103.42706 * 204.44623 * 4 2 1 6 6 C 1.34778 * 127.03653 * 219.28831 * 5 4 2 7 7 O 1.21553 * 120.00306 * 184.39734 * 6 5 4 8 8 C 1.47834 * 119.99854 * 4.39386 * 6 5 4 9 9 C 1.39967 * 120.94008 * 319.86235 * 8 6 5 10 10 N 1.32130 * 118.92473 * 180.02562 * 9 8 6 11 11 C 1.31882 * 120.96735 * 359.97438 * 10 9 8 12 12 N 1.31857 * 122.09296 * 0.02562 * 11 10 9 13 13 C 1.32164 * 120.96955 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.53556 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.50376 * 2.57517 * 14 13 12 16 16 C 1.52995 * 117.50145 * 293.90876 * 14 13 12 17 17 C 1.47489 * 105.93050 * 39.02311 * 5 4 2 18 18 C 1.54000 * 107.08452 * 334.77900 * 17 5 4 19 19 H 1.09003 * 110.32125 * 120.30035 * 18 17 5 20 20 C 1.52999 * 110.32697 * 242.41377 * 18 17 5 21 21 N 1.46502 * 109.47212 * 293.54949 * 20 18 17 22 22 C 1.36937 * 120.00077 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99785 * 359.97438 * 22 21 20 24 24 C 1.38808 * 120.00098 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00029 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00239 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47174 * 89.99882 * 26 24 22 28 28 H 1.48499 * 109.47235 * 210.00109 * 26 24 22 29 29 H 1.48504 * 109.47018 * 329.99892 * 26 24 22 30 30 H 1.09000 * 109.47143 * 296.80813 * 1 2 3 31 31 H 1.08991 * 109.47118 * 56.81340 * 1 2 3 32 32 H 1.09001 * 109.46948 * 176.81127 * 1 2 3 33 33 H 1.08996 * 110.61913 * 85.92801 * 4 2 1 34 34 H 1.09003 * 110.54478 * 322.92674 * 4 2 1 35 35 H 1.08002 * 120.53822 * 0.02562 * 9 8 6 36 36 H 1.07997 * 118.95688 * 180.02562 * 11 10 9 37 37 H 1.09005 * 115.54862 * 148.23961 * 14 13 12 38 38 H 1.09004 * 117.49390 * 359.97438 * 15 14 13 39 39 H 1.09000 * 117.50396 * 145.01803 * 15 14 13 40 40 H 1.08998 * 117.50205 * 214.98068 * 16 14 13 41 41 H 1.08999 * 117.49969 * 359.97438 * 16 14 13 42 42 H 1.09003 * 109.91244 * 94.14168 * 17 5 4 43 43 H 1.09010 * 109.91194 * 215.22566 * 17 5 4 44 44 H 1.08994 * 109.47016 * 53.54770 * 20 18 17 45 45 H 1.08995 * 109.46983 * 173.55116 * 20 18 17 46 46 H 0.96999 * 120.00223 * 359.97438 * 21 20 18 47 47 H 0.97000 * 120.00218 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0799 -0.7922 -1.2083 5 7 3.4279 -1.2112 -0.7600 6 6 4.5539 -1.2497 -1.4998 7 8 5.5802 -1.6925 -1.0221 8 6 4.5407 -0.7534 -2.8923 9 6 3.4556 -1.0112 -3.7379 10 7 3.4858 -0.5491 -4.9754 11 6 4.5170 0.1453 -5.4154 12 7 5.5594 0.4110 -4.6529 13 6 5.6127 -0.0127 -3.4021 14 6 6.8092 0.2961 -2.5395 15 6 7.9149 1.1608 -3.1482 16 6 8.1455 -0.3370 -2.9321 17 6 3.2874 -1.5716 0.6632 18 6 2.0775 -0.7915 1.2102 19 1 1.3218 -1.4806 1.5872 20 6 2.5199 0.1681 2.3167 21 7 2.9887 -0.6015 3.4719 22 6 3.4368 0.0480 4.5910 23 1 3.4451 1.1275 4.6219 24 6 3.8804 -0.6811 5.6857 25 7 3.8699 -1.9968 5.6482 26 14 4.4924 0.2048 7.2122 27 1 3.3560 0.4351 8.1399 28 1 5.5220 -0.6256 7.8871 29 1 5.0858 1.5093 6.8229 30 1 -0.3633 0.4635 0.9172 31 1 -0.3633 0.5625 -0.8600 32 1 -0.3633 -1.0261 -0.0572 33 1 2.1487 -0.1520 -2.0877 34 1 1.4548 -1.6616 -1.4121 35 1 2.6073 -1.5788 -3.3847 36 1 4.5075 0.5079 -6.4327 37 1 6.6031 0.4179 -1.4760 38 1 7.7771 1.5060 -4.1730 39 1 8.4365 1.8511 -2.4853 40 1 8.8188 -0.6314 -2.1271 41 1 8.1593 -0.9772 -3.8142 42 1 3.1125 -2.6432 0.7593 43 1 4.1897 -1.2925 1.2077 44 1 3.3285 0.7993 1.9484 45 1 1.6777 0.7929 2.6139 46 1 2.9809 -1.5710 3.4442 47 1 4.1803 -2.5063 6.4130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106937122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:17 Heat of formation + Delta-G solvation = 57.348970 kcal Electronic energy + Delta-G solvation = -28416.569566 eV Core-core repulsion = 24600.777384 eV Total energy + Delta-G solvation = -3815.792182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67455 -39.90748 -38.03476 -37.32743 -34.74444 -33.77373 -33.06577 -32.30641 -31.42263 -29.11448 -26.75137 -26.16337 -25.58965 -24.74343 -23.23980 -22.46799 -21.57162 -21.25832 -20.24496 -19.59004 -18.21642 -17.53459 -17.18366 -16.92243 -16.39267 -15.66324 -15.35650 -15.06417 -14.78802 -14.44918 -14.36214 -14.09665 -13.85386 -13.56745 -13.39303 -12.96359 -12.79178 -12.69862 -12.29154 -12.12789 -11.94136 -11.78384 -11.72345 -11.55704 -11.47424 -11.11681 -10.91233 -10.73467 -10.65364 -10.60295 -10.47200 -10.36862 -10.01247 -9.88095 -9.69074 -9.65772 -9.61475 -8.89667 -8.69258 -6.94293 -5.77217 -3.06409 0.21845 0.63275 2.55967 2.80681 3.29394 3.43525 3.48757 3.50575 3.56984 3.71819 3.74240 4.03344 4.17811 4.43143 4.55244 4.56991 4.72930 4.77143 4.77452 4.85104 4.92662 5.01220 5.21746 5.23997 5.39201 5.43145 5.45692 5.53076 5.56631 5.64532 5.69036 5.71499 5.88034 5.92974 5.94808 6.02383 6.04615 6.09051 6.12910 6.19623 6.36049 6.39024 6.54375 6.67894 6.81392 7.43219 7.65409 7.69198 8.02141 8.41210 9.52644 10.08795 10.43378 11.45481 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.003200 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.653834 B = 8748.392400 C =10220.502310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.084 0.916 4 C 0.094 3.906 5 N -0.611 5.611 6 C 0.582 3.418 7 O -0.515 6.515 8 C -0.224 4.224 9 C 0.179 3.821 10 N -0.526 5.526 11 C 0.312 3.688 12 N -0.520 5.520 13 C 0.261 3.739 14 C -0.123 4.123 15 C -0.158 4.158 16 C -0.142 4.142 17 C 0.113 3.887 18 C -0.102 4.102 19 H 0.089 0.911 20 C 0.163 3.837 21 N -0.732 5.732 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.175 0.825 36 H 0.201 0.799 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.019 0.981 45 H 0.022 0.978 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 3.813 -23.273 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.103 0.897 4 C -0.029 4.029 5 N -0.345 5.345 6 C 0.368 3.632 7 O -0.390 6.390 8 C -0.232 4.232 9 C 0.012 3.988 10 N -0.240 5.240 11 C 0.025 3.975 12 N -0.234 5.234 13 C 0.115 3.885 14 C -0.142 4.142 15 C -0.195 4.195 16 C -0.180 4.180 17 C -0.008 4.008 18 C -0.122 4.122 19 H 0.107 0.893 20 C 0.035 3.965 21 N -0.377 5.377 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.192 0.808 36 H 0.218 0.782 37 H 0.149 0.851 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.620 4.019 -23.896 24.286 hybrid contribution 0.092 -0.242 1.722 1.742 sum -1.528 3.777 -22.174 22.545 Atomic orbital electron populations 1.21736 0.93633 1.02135 1.02271 1.22220 0.96228 0.99719 0.93728 0.89738 1.22828 0.83213 0.98800 0.98054 1.48719 1.07813 1.65400 1.12552 1.17316 0.82605 0.79194 0.84083 1.90855 1.30815 1.45365 1.71981 1.21536 0.98438 1.05525 0.97660 1.23612 0.95291 0.91621 0.88230 1.68455 1.28118 1.12132 1.15294 1.25172 0.83663 0.88894 0.99804 1.68237 1.27577 1.22478 1.05073 1.20879 0.91880 0.86256 0.89452 1.20997 0.86751 1.07933 0.98531 1.23046 0.99954 0.93651 1.02898 1.22900 0.95850 0.96013 1.03189 1.22240 1.00546 0.99067 0.78957 1.22407 0.96563 0.97988 0.95229 0.89277 1.20693 0.96156 0.92791 0.86854 1.42359 1.77056 1.05698 1.12552 1.19195 1.34722 0.91209 0.92091 0.91249 1.24735 1.02153 0.95472 0.98474 1.69653 1.53251 1.04178 1.30952 0.86198 0.78215 0.78484 0.83337 1.21726 1.21739 1.20773 0.91606 0.92644 0.92280 0.90571 0.90205 0.80847 0.78225 0.85149 0.87360 0.88160 0.87658 0.88820 0.91355 0.88868 0.96331 0.95980 0.78229 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.16 37.16 0.34 -0.92 16 2 C -0.10 -1.10 3.19 -88.93 -0.28 -1.38 16 3 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 4 C 0.09 0.93 4.89 -2.32 -0.01 0.92 16 5 N -0.61 -8.26 3.29 -171.10 -0.56 -8.82 16 6 C 0.58 8.63 7.06 -12.33 -0.09 8.55 16 7 O -0.51 -9.44 15.63 5.32 0.08 -9.36 16 8 C -0.22 -2.79 5.49 -104.69 -0.57 -3.37 16 9 C 0.18 1.83 9.06 -16.78 -0.15 1.68 16 10 N -0.53 -5.33 10.42 -14.24 -0.15 -5.48 16 11 C 0.31 2.90 12.27 -92.03 -1.13 1.77 16 12 N -0.52 -5.78 9.45 -10.48 -0.10 -5.88 16 13 C 0.26 3.27 6.53 -81.82 -0.53 2.73 16 14 C -0.12 -1.53 4.77 -91.77 -0.44 -1.96 16 15 C -0.16 -1.58 10.05 -26.69 -0.27 -1.85 16 16 C -0.14 -1.54 10.24 -26.69 -0.27 -1.81 16 17 C 0.11 1.79 6.29 -2.98 -0.02 1.77 16 18 C -0.10 -1.50 2.65 -89.25 -0.24 -1.74 16 19 H 0.09 1.30 7.85 -51.93 -0.41 0.89 16 20 C 0.16 3.13 5.34 -4.04 -0.02 3.10 16 21 N -0.73 -18.09 5.33 -59.91 -0.32 -18.41 16 22 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 26 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.08 0.66 5.88 -51.93 -0.31 0.36 16 34 H 0.08 0.64 7.99 -51.93 -0.41 0.23 16 35 H 0.17 1.38 6.42 -52.49 -0.34 1.04 16 36 H 0.20 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.13 1.83 7.12 -51.93 -0.37 1.46 16 38 H 0.11 1.05 7.58 -51.93 -0.39 0.65 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.82 7.53 -51.92 -0.39 1.43 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.38 9.93 7.51 -40.82 -0.31 9.63 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 383.71 15.07 5.78 5.78 Total: -1.00 -33.19 383.71 -10.60 -43.79 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -7.11 Total: 8.12 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -3.93 Total: 0.18 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: -0.41 Total: -65.96 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.19 -10.60 -43.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106937122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.138 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds