Wall clock time and date at job start Tue Mar 31 2020 17:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.65608 * 2 1 4 4 C 1.54592 * 110.83763 * 236.74951 * 2 1 3 5 5 N 1.48111 * 103.42706 * 204.44623 * 4 2 1 6 6 C 1.34778 * 127.03653 * 219.28831 * 5 4 2 7 7 O 1.21553 * 120.00306 * 184.39734 * 6 5 4 8 8 C 1.47834 * 119.99854 * 4.39386 * 6 5 4 9 9 C 1.39967 * 120.94008 * 319.86235 * 8 6 5 10 10 N 1.32130 * 118.92473 * 180.02562 * 9 8 6 11 11 C 1.31882 * 120.96735 * 359.97438 * 10 9 8 12 12 N 1.31857 * 122.09296 * 0.02562 * 11 10 9 13 13 C 1.32164 * 120.96955 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.53556 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.50376 * 2.57517 * 14 13 12 16 16 C 1.52995 * 117.50145 * 293.90876 * 14 13 12 17 17 C 1.47489 * 105.93050 * 39.02311 * 5 4 2 18 18 C 1.54000 * 107.08452 * 334.77900 * 17 5 4 19 19 H 1.09003 * 110.32125 * 120.30035 * 18 17 5 20 20 C 1.52999 * 110.32697 * 242.41377 * 18 17 5 21 21 N 1.46502 * 109.47212 * 293.54949 * 20 18 17 22 22 C 1.36937 * 120.00077 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99785 * 359.97438 * 22 21 20 24 24 C 1.38808 * 120.00098 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00029 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00239 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47174 * 89.99882 * 26 24 22 28 28 H 1.48499 * 109.47235 * 210.00109 * 26 24 22 29 29 H 1.48504 * 109.47018 * 329.99892 * 26 24 22 30 30 H 1.09000 * 109.47143 * 296.80813 * 1 2 3 31 31 H 1.08991 * 109.47118 * 56.81340 * 1 2 3 32 32 H 1.09001 * 109.46948 * 176.81127 * 1 2 3 33 33 H 1.08996 * 110.61913 * 85.92801 * 4 2 1 34 34 H 1.09003 * 110.54478 * 322.92674 * 4 2 1 35 35 H 1.08002 * 120.53822 * 0.02562 * 9 8 6 36 36 H 1.07997 * 118.95688 * 180.02562 * 11 10 9 37 37 H 1.09005 * 115.54862 * 148.23961 * 14 13 12 38 38 H 1.09004 * 117.49390 * 359.97438 * 15 14 13 39 39 H 1.09000 * 117.50396 * 145.01803 * 15 14 13 40 40 H 1.08998 * 117.50205 * 214.98068 * 16 14 13 41 41 H 1.08999 * 117.49969 * 359.97438 * 16 14 13 42 42 H 1.09003 * 109.91244 * 94.14168 * 17 5 4 43 43 H 1.09010 * 109.91194 * 215.22566 * 17 5 4 44 44 H 1.08994 * 109.47016 * 53.54770 * 20 18 17 45 45 H 1.08995 * 109.46983 * 173.55116 * 20 18 17 46 46 H 0.96999 * 120.00223 * 359.97438 * 21 20 18 47 47 H 0.97000 * 120.00218 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0799 -0.7922 -1.2083 5 7 3.4279 -1.2112 -0.7600 6 6 4.5539 -1.2497 -1.4998 7 8 5.5802 -1.6925 -1.0221 8 6 4.5407 -0.7534 -2.8923 9 6 3.4556 -1.0112 -3.7379 10 7 3.4858 -0.5491 -4.9754 11 6 4.5170 0.1453 -5.4154 12 7 5.5594 0.4110 -4.6529 13 6 5.6127 -0.0127 -3.4021 14 6 6.8092 0.2961 -2.5395 15 6 7.9149 1.1608 -3.1482 16 6 8.1455 -0.3370 -2.9321 17 6 3.2874 -1.5716 0.6632 18 6 2.0775 -0.7915 1.2102 19 1 1.3218 -1.4806 1.5872 20 6 2.5199 0.1681 2.3167 21 7 2.9887 -0.6015 3.4719 22 6 3.4368 0.0480 4.5910 23 1 3.4451 1.1275 4.6219 24 6 3.8804 -0.6811 5.6857 25 7 3.8699 -1.9968 5.6482 26 14 4.4924 0.2048 7.2122 27 1 3.3560 0.4351 8.1399 28 1 5.5220 -0.6256 7.8871 29 1 5.0858 1.5093 6.8229 30 1 -0.3633 0.4635 0.9172 31 1 -0.3633 0.5625 -0.8600 32 1 -0.3633 -1.0261 -0.0572 33 1 2.1487 -0.1520 -2.0877 34 1 1.4548 -1.6616 -1.4121 35 1 2.6073 -1.5788 -3.3847 36 1 4.5075 0.5079 -6.4327 37 1 6.6031 0.4179 -1.4760 38 1 7.7771 1.5060 -4.1730 39 1 8.4365 1.8511 -2.4853 40 1 8.8188 -0.6314 -2.1271 41 1 8.1593 -0.9772 -3.8142 42 1 3.1125 -2.6432 0.7593 43 1 4.1897 -1.2925 1.2077 44 1 3.3285 0.7993 1.9484 45 1 1.6777 0.7929 2.6139 46 1 2.9809 -1.5710 3.4442 47 1 4.1803 -2.5063 6.4130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106937122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:16 Heat of formation + Delta-G solvation = 36.889489 kcal Electronic energy + Delta-G solvation = -28417.456756 eV Core-core repulsion = 24600.777384 eV Total energy + Delta-G solvation = -3816.679372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.54880 -40.98658 -39.18401 -38.23941 -36.49648 -34.72972 -34.22636 -33.23028 -33.10856 -30.62438 -27.80138 -27.33422 -26.45237 -26.01244 -24.89224 -23.32423 -22.64541 -22.39925 -21.27169 -20.78380 -19.26265 -19.05071 -18.32100 -17.93046 -17.55065 -16.73291 -16.57535 -16.44020 -15.94842 -15.62309 -15.29495 -15.19978 -15.19051 -15.12980 -14.71548 -14.17815 -13.96689 -13.72657 -13.36747 -13.21603 -13.16334 -12.97583 -12.79572 -12.70253 -12.58116 -12.53630 -12.38045 -12.16879 -11.96669 -11.90771 -11.60090 -11.54310 -11.44938 -11.33957 -10.99858 -10.95173 -10.56467 -10.44024 -9.83669 -9.02338 -7.97173 -5.26043 -0.62998 -0.20323 1.44981 1.45930 1.47067 1.55201 1.75011 2.45780 2.53826 2.74560 2.87425 3.00573 3.20286 3.23792 3.36417 3.46743 3.62272 3.68167 3.75492 3.89802 3.96483 4.03060 4.16092 4.19121 4.26372 4.39400 4.44370 4.53809 4.58772 4.62019 4.68728 4.76296 4.82236 4.85418 4.89749 4.95214 5.00949 5.06479 5.16463 5.19545 5.22253 5.24478 5.36426 5.46355 5.54243 5.70633 6.25047 6.35325 6.85347 6.89751 7.31657 8.06740 8.29982 9.26133 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.003200 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.653834 B = 8748.392400 C =10220.502310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 H 0.077 0.923 4 C 0.096 3.904 5 N -0.610 5.610 6 C 0.579 3.421 7 O -0.564 6.564 8 C -0.243 4.243 9 C 0.193 3.807 10 N -0.528 5.528 11 C 0.317 3.683 12 N -0.527 5.527 13 C 0.253 3.747 14 C -0.145 4.145 15 C -0.136 4.136 16 C -0.143 4.143 17 C 0.119 3.881 18 C -0.091 4.091 19 H 0.096 0.904 20 C 0.163 3.837 21 N -0.744 5.744 22 C -0.247 4.247 23 H 0.073 0.927 24 C -0.074 4.074 25 N -0.967 5.967 26 Si 0.972 3.028 27 H -0.283 1.283 28 H -0.296 1.296 29 H -0.272 1.272 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.200 0.800 36 H 0.240 0.760 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.005 0.995 45 H 0.030 0.970 46 H 0.375 0.625 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 4.980 -25.831 26.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.110 4.110 3 H 0.096 0.904 4 C -0.026 4.026 5 N -0.342 5.342 6 C 0.368 3.632 7 O -0.443 6.443 8 C -0.250 4.250 9 C 0.026 3.974 10 N -0.242 5.242 11 C 0.031 3.969 12 N -0.241 5.241 13 C 0.107 3.893 14 C -0.165 4.165 15 C -0.173 4.173 16 C -0.181 4.181 17 C -0.004 4.004 18 C -0.111 4.111 19 H 0.114 0.886 20 C 0.037 3.963 21 N -0.387 5.387 22 C -0.379 4.379 23 H 0.091 0.909 24 C -0.266 4.266 25 N -0.618 5.618 26 Si 0.801 3.199 27 H -0.210 1.210 28 H -0.222 1.222 29 H -0.197 1.197 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.216 0.784 36 H 0.256 0.744 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.023 0.977 45 H 0.048 0.952 46 H 0.207 0.793 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.428 5.240 -26.499 27.228 hybrid contribution 0.638 -0.558 2.434 2.578 sum -2.790 4.682 -24.064 24.674 Atomic orbital electron populations 1.21717 0.91310 1.03337 1.02876 1.22198 0.97956 0.98808 0.92036 0.90441 1.23116 0.81212 1.00234 0.97996 1.48759 1.09173 1.64823 1.11433 1.17742 0.82078 0.78390 0.85038 1.90819 1.32618 1.47575 1.73272 1.21348 0.99950 1.07230 0.96508 1.23960 0.94940 0.90675 0.87839 1.68595 1.28331 1.12396 1.14848 1.26007 0.82593 0.87388 1.00863 1.68303 1.28460 1.22912 1.04436 1.20907 0.91746 0.86486 0.90125 1.20917 0.87872 1.10167 0.97509 1.23098 0.97900 0.93093 1.03217 1.22928 0.94970 0.97010 1.03170 1.21983 0.98883 0.99252 0.80287 1.22280 0.96113 0.97481 0.95214 0.88595 1.20816 0.95543 0.93357 0.86581 1.42561 1.77110 1.05593 1.13417 1.19596 1.33712 0.91586 0.93028 0.90919 1.25554 1.03213 0.96245 1.01602 1.69808 1.54788 1.05573 1.31597 0.85166 0.77542 0.77547 0.79668 1.20991 1.22240 1.19697 0.92666 0.90192 0.91026 0.88492 0.87064 0.78373 0.74428 0.87932 0.86534 0.87053 0.87847 0.88535 0.91271 0.93634 0.97666 0.95230 0.79293 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.16 71.98 0.66 -1.32 16 2 C -0.09 -1.81 3.19 -9.70 -0.03 -1.84 16 3 H 0.08 1.69 7.86 -2.39 -0.02 1.68 16 4 C 0.10 1.63 4.89 86.61 0.42 2.05 16 5 N -0.61 -16.40 3.29 -813.50 -2.68 -19.08 16 6 C 0.58 17.68 7.06 86.78 0.61 18.29 16 7 O -0.56 -22.16 15.63 -3.88 -0.06 -22.22 16 8 C -0.24 -5.88 5.49 -19.91 -0.11 -5.99 16 9 C 0.19 3.43 9.06 85.07 0.77 4.20 16 10 N -0.53 -8.92 10.42 -198.98 -2.07 -11.00 16 11 C 0.32 4.91 12.27 180.84 2.22 7.13 16 12 N -0.53 -10.73 9.45 -187.07 -1.77 -12.50 16 13 C 0.25 6.23 6.53 42.92 0.28 6.51 16 14 C -0.15 -3.74 4.77 -11.54 -0.06 -3.80 16 15 C -0.14 -2.66 10.05 30.62 0.31 -2.35 16 16 C -0.14 -3.18 10.24 30.62 0.31 -2.87 16 17 C 0.12 3.89 6.29 86.53 0.54 4.43 16 18 C -0.09 -2.67 2.65 -9.90 -0.03 -2.70 16 19 H 0.10 2.71 7.85 -2.39 -0.02 2.69 16 20 C 0.16 6.42 5.34 86.38 0.46 6.88 16 21 N -0.74 -37.99 5.33 -343.46 -1.83 -39.82 16 22 C -0.25 -14.06 9.99 84.03 0.84 -13.22 16 23 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 24 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 25 N -0.97 -59.96 13.06 21.65 0.28 -59.67 16 26 Si 0.97 46.92 29.55 68.60 2.03 48.94 16 27 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 28 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 29 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.90 8.10 -2.39 -0.02 0.88 16 33 H 0.10 1.32 5.88 -2.39 -0.01 1.31 16 34 H 0.11 1.29 7.99 -2.39 -0.02 1.28 16 35 H 0.20 2.38 6.42 -2.91 -0.02 2.36 16 36 H 0.24 1.60 8.06 -2.91 -0.02 1.57 16 37 H 0.10 3.18 7.12 -2.38 -0.02 3.16 16 38 H 0.12 2.09 7.58 -2.38 -0.02 2.07 16 39 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.04 1.93 7.53 -2.38 -0.02 1.91 16 44 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.38 20.24 7.51 -92.71 -0.70 19.54 16 47 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -75.48 383.71 1.87 -73.62 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.29 Total: 30.16 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 7.68 Total: 11.56 kcal Atomic # 7 Polarization: -134.00 SS G_CDS: -8.07 Total: -142.07 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.06 Total: -22.22 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -75.48 1.87 -73.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106937122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.505 kcal (2) G-P(sol) polarization free energy of solvation -75.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds