Wall clock time and date at job start Tue Mar 31 2020 15:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47132 * 2 1 4 4 H 1.09002 * 109.47260 * 305.41414 * 3 2 1 5 5 C 1.53002 * 109.47178 * 65.41369 * 3 2 1 6 6 C 1.52999 * 109.46901 * 184.40728 * 5 3 2 7 7 F 1.39901 * 109.47320 * 295.74029 * 6 5 3 8 8 F 1.39905 * 109.46906 * 175.73924 * 6 5 3 9 9 C 1.50697 * 109.47176 * 185.41484 * 3 2 1 10 10 O 1.21285 * 119.99795 * 274.65445 * 9 3 2 11 11 N 1.34774 * 120.00289 * 94.65167 * 9 3 2 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 3 13 13 C 1.54318 * 111.69017 * 298.98496 * 12 11 9 14 14 C 1.55054 * 103.93944 * 262.78762 * 13 12 11 15 15 C 1.55056 * 102.10900 * 319.95152 * 14 13 12 16 16 C 1.54314 * 103.93658 * 40.05290 * 15 14 13 17 17 H 1.09003 * 111.02403 * 96.81529 * 16 15 14 18 18 C 1.53783 * 109.79017 * 221.69159 * 16 15 14 19 19 N 1.47207 * 106.37965 * 95.21847 * 18 16 15 20 20 C 1.36936 * 126.70401 * 211.28583 * 19 18 16 21 21 H 1.08005 * 120.00285 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00206 * 0.02562 * 20 19 18 23 23 N 1.31625 * 119.99581 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00358 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46856 * 90.00390 * 24 22 20 26 26 H 1.48494 * 109.47078 * 210.00208 * 24 22 20 27 27 H 1.48498 * 109.47020 * 330.00321 * 24 22 20 28 28 C 1.48679 * 107.09374 * 30.74383 * 19 18 16 29 29 H 1.08997 * 109.46626 * 53.90691 * 1 2 3 30 30 H 1.08998 * 109.47160 * 173.90502 * 1 2 3 31 31 H 1.08999 * 109.47298 * 293.90802 * 1 2 3 32 32 H 1.08997 * 109.46928 * 239.99983 * 2 1 3 33 33 H 1.08994 * 109.46648 * 119.99982 * 2 1 3 34 34 H 1.08994 * 109.47244 * 64.40351 * 5 3 2 35 35 H 1.09003 * 109.47232 * 304.40428 * 5 3 2 36 36 H 1.08996 * 109.47401 * 55.74337 * 6 5 3 37 37 H 0.96998 * 119.99840 * 359.97438 * 11 9 3 38 38 H 1.09004 * 110.53817 * 21.40240 * 13 12 11 39 39 H 1.09005 * 110.53331 * 144.03497 * 13 12 11 40 40 H 1.09003 * 110.90042 * 78.15128 * 14 13 12 41 41 H 1.08994 * 110.90880 * 201.70973 * 14 13 12 42 42 H 1.08998 * 110.53474 * 158.67224 * 15 14 13 43 43 H 1.09004 * 110.53104 * 281.43625 * 15 14 13 44 44 H 1.09002 * 110.07347 * 214.44895 * 18 16 15 45 45 H 1.08996 * 110.07487 * 335.98914 * 18 16 15 46 46 H 0.96999 * 119.99839 * 179.97438 * 23 22 20 47 47 H 1.09000 * 110.90720 * 210.52915 * 28 19 18 48 48 H 1.09002 * 109.94557 * 88.51782 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5997 1.9836 -0.8375 5 6 1.6442 2.1234 1.3117 6 6 2.0573 3.5959 1.2668 7 9 3.4513 3.6871 1.1915 8 9 1.6096 4.2413 2.4245 9 6 3.5411 1.4446 -0.1341 10 8 4.2381 1.3273 0.8515 11 7 4.1090 1.5768 -1.3492 12 6 5.5682 1.5782 -1.4795 13 6 6.2091 2.7469 -0.7017 14 6 6.4265 3.8390 -1.7807 15 6 6.9023 3.0040 -2.9975 16 6 6.0133 1.7434 -2.9537 17 1 5.1603 1.8430 -3.6250 18 6 6.8602 0.4979 -3.2639 19 7 7.2654 -0.0628 -1.9645 20 6 8.4238 -0.7396 -1.6905 21 1 8.6118 -1.1066 -0.6923 22 6 9.3567 -0.9541 -2.6958 23 7 9.1280 -0.5064 -3.9123 24 14 10.9374 -1.8768 -2.3220 25 1 10.7279 -3.3293 -2.5483 26 1 12.0189 -1.3877 -3.2143 27 1 11.3218 -1.6467 -0.9062 28 6 6.1838 0.2550 -0.9951 29 1 -0.3632 0.6054 -0.8304 30 1 -0.3633 -1.0218 -0.1091 31 1 -0.3634 0.4165 0.9395 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1472 1.6301 2.1434 35 1 0.5649 2.0528 1.4465 36 1 1.6143 4.0710 0.3916 37 1 3.5515 1.6701 -2.1375 38 1 5.5334 3.1057 0.0747 39 1 7.1608 2.4408 -0.2674 40 1 5.4931 4.3556 -2.0046 41 1 7.1951 4.5462 -1.4691 42 1 6.7412 3.5536 -3.9249 43 1 7.9530 2.7349 -2.8890 44 1 6.2665 -0.2301 -3.8167 45 1 7.7411 0.7787 -3.8412 46 1 9.7800 -0.6559 -4.6147 47 1 6.5861 0.3756 0.0108 48 1 5.4315 -0.5337 -1.0056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111775021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:44 Heat of formation + Delta-G solvation = -129.691824 kcal Electronic energy + Delta-G solvation = -30868.516685 eV Core-core repulsion = 26593.924618 eV Total energy + Delta-G solvation = -4274.592066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.96330 -46.96315 -40.29506 -38.47671 -35.72051 -34.31958 -33.29587 -31.34908 -31.22649 -29.39827 -28.05332 -26.65399 -24.59107 -24.32840 -23.15371 -22.14942 -20.63522 -20.50410 -19.21821 -18.79152 -17.78528 -17.25609 -17.09102 -16.56033 -16.53524 -15.62021 -14.76284 -14.71595 -14.39026 -14.25282 -14.05932 -13.81176 -13.58005 -13.44836 -13.39505 -13.25240 -13.10830 -12.82468 -12.61071 -12.49019 -12.13370 -11.79092 -11.73590 -11.50746 -11.24002 -11.03998 -10.99262 -10.88196 -10.76665 -10.58259 -10.46354 -10.23997 -10.18431 -10.01077 -9.90853 -9.89171 -9.63806 -9.25443 -8.69778 -8.53362 -6.82375 -5.60897 -3.04654 2.88618 3.35837 3.42646 3.47823 3.49828 3.65181 4.03354 4.22084 4.43401 4.52015 4.68911 4.78295 4.82507 4.98307 5.06452 5.12479 5.20450 5.22400 5.43292 5.44643 5.47955 5.53668 5.66772 5.67478 5.76166 5.85475 5.91763 5.94227 6.00196 6.05890 6.17391 6.19424 6.34822 6.43009 6.45945 6.62831 6.73022 6.83362 6.90568 7.00766 7.20078 7.45095 7.64758 7.81838 7.88693 8.42416 8.56573 9.25098 9.84325 10.51959 11.40358 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.017204 B = 0.003575 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.090903 B = 7830.069616 C = 8377.262688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.091 0.909 5 C -0.158 4.158 6 C 0.258 3.742 7 F -0.189 7.189 8 F -0.210 7.210 9 C 0.512 3.488 10 O -0.520 6.520 11 N -0.710 5.710 12 C 0.160 3.840 13 C -0.114 4.114 14 C -0.124 4.124 15 C -0.109 4.109 16 C -0.113 4.113 17 H 0.067 0.933 18 C 0.143 3.857 19 N -0.595 5.595 20 C -0.213 4.213 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.924 5.924 24 Si 0.914 3.086 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.140 3.860 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.393 0.607 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.002 0.998 45 H 0.129 0.871 46 H 0.252 0.748 47 H 0.052 0.948 48 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.035 8.161 4.088 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.127 4.127 4 H 0.109 0.891 5 C -0.196 4.196 6 C 0.204 3.796 7 F -0.171 7.171 8 F -0.191 7.191 9 C 0.296 3.704 10 O -0.396 6.396 11 N -0.360 5.360 12 C 0.074 3.926 13 C -0.153 4.153 14 C -0.161 4.161 15 C -0.147 4.147 16 C -0.133 4.133 17 H 0.085 0.915 18 C 0.017 3.983 19 N -0.319 5.319 20 C -0.341 4.341 21 H 0.096 0.904 22 C -0.208 4.208 23 N -0.573 5.573 24 Si 0.745 3.255 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.013 3.987 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.227 0.773 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.020 0.980 45 H 0.146 0.854 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -18.260 7.996 4.742 20.490 hybrid contribution 0.407 -0.407 -0.226 0.618 sum -17.853 7.589 4.516 19.917 Atomic orbital electron populations 1.21838 0.94989 1.02245 1.01909 1.21414 0.96188 0.93501 1.03826 1.21324 0.93977 0.99134 0.98310 0.89123 1.22642 1.03811 0.93122 1.00054 1.21935 0.77265 0.94154 0.86217 1.93083 1.30538 1.96987 1.96456 1.92973 1.89066 1.83544 1.53524 1.20276 0.89588 0.76764 0.83738 1.90721 1.63846 1.47912 1.37077 1.46098 1.07572 1.74145 1.08227 1.21805 0.77645 0.97031 0.96145 1.22675 1.01031 0.94283 0.97265 1.22577 0.99815 0.97315 0.96422 1.22440 1.00859 0.94694 0.96679 1.23018 0.98118 0.98927 0.93242 0.91490 1.21969 0.98448 0.88892 0.88985 1.44801 1.17731 1.64482 1.04923 1.19130 0.93071 1.26394 0.95529 0.90435 1.24739 0.98918 1.01608 0.95530 1.69588 1.35516 1.51192 1.01015 0.86060 0.82860 0.79275 0.77292 1.21733 1.21680 1.20702 1.21809 0.90879 0.91956 0.94084 0.92445 0.92166 0.92432 0.90788 0.90699 0.87937 0.88100 0.87948 0.77348 0.90988 0.90698 0.92656 0.92283 0.92661 0.90238 0.97978 0.85370 0.93754 0.92931 0.96760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.53 37.16 0.35 -0.60 16 2 C -0.11 -0.97 5.38 -26.73 -0.14 -1.12 16 3 C -0.11 -0.99 2.19 -91.77 -0.20 -1.19 16 4 H 0.09 0.60 8.11 -51.93 -0.42 0.18 16 5 C -0.16 -1.42 4.67 -26.73 -0.12 -1.54 16 6 C 0.26 2.60 5.27 37.16 0.20 2.80 16 7 F -0.19 -2.73 13.40 2.25 0.03 -2.70 16 8 F -0.21 -2.41 17.34 2.25 0.04 -2.37 16 9 C 0.51 7.24 4.61 -10.99 -0.05 7.19 16 10 O -0.52 -9.50 12.80 5.55 0.07 -9.43 16 11 N -0.71 -10.18 5.19 -45.68 -0.24 -10.41 16 12 C 0.16 2.91 0.93 -129.73 -0.12 2.79 16 13 C -0.11 -2.08 5.50 -24.96 -0.14 -2.22 16 14 C -0.12 -1.96 6.92 -24.56 -0.17 -2.13 16 15 C -0.11 -1.91 6.25 -24.96 -0.16 -2.06 16 16 C -0.11 -2.08 3.63 -88.54 -0.32 -2.40 16 17 H 0.07 1.06 7.71 -51.93 -0.40 0.66 16 18 C 0.14 3.40 5.62 -3.25 -0.02 3.38 16 19 N -0.59 -15.37 3.42 -169.93 -0.58 -15.95 16 20 C -0.21 -6.00 10.33 -15.06 -0.16 -6.16 16 21 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 22 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 23 N -0.92 -26.52 10.08 55.49 0.56 -25.96 16 24 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 28 C 0.14 3.15 5.36 -2.43 -0.01 3.13 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.32 6.78 -51.93 -0.35 -0.03 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.14 7.70 -51.93 -0.40 0.74 16 35 H 0.10 0.62 6.52 -51.93 -0.34 0.28 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.39 4.45 8.27 -40.82 -0.34 4.11 16 38 H 0.07 1.33 5.65 -51.93 -0.29 1.04 16 39 H 0.07 1.55 7.56 -51.93 -0.39 1.16 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 1.64 7.61 -51.93 -0.40 1.24 16 44 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 45 H 0.13 3.41 4.93 -51.93 -0.26 3.15 16 46 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 47 H 0.05 1.26 7.52 -51.93 -0.39 0.87 16 48 H 0.01 0.34 8.05 -51.93 -0.42 -0.08 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -32.48 370.62 -8.46 -40.95 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.75 Total: 3.66 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.16 Total: -0.59 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.26 Total: -52.33 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.07 Total: -9.43 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.07 Total: -5.07 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.48 -8.46 -40.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111775021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.747 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds