Wall clock time and date at job start Tue Mar 31 2020 15:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47132 * 2 1 4 4 H 1.09002 * 109.47260 * 305.41414 * 3 2 1 5 5 C 1.53002 * 109.47178 * 65.41369 * 3 2 1 6 6 C 1.52999 * 109.46901 * 184.40728 * 5 3 2 7 7 F 1.39901 * 109.47320 * 295.74029 * 6 5 3 8 8 F 1.39905 * 109.46906 * 175.73924 * 6 5 3 9 9 C 1.50697 * 109.47176 * 185.41484 * 3 2 1 10 10 O 1.21285 * 119.99795 * 274.65445 * 9 3 2 11 11 N 1.34774 * 120.00289 * 94.65167 * 9 3 2 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 3 13 13 C 1.54318 * 111.69017 * 298.98496 * 12 11 9 14 14 C 1.55054 * 103.93944 * 262.78762 * 13 12 11 15 15 C 1.55056 * 102.10900 * 319.95152 * 14 13 12 16 16 C 1.54314 * 103.93658 * 40.05290 * 15 14 13 17 17 H 1.09003 * 111.02403 * 96.81529 * 16 15 14 18 18 C 1.53783 * 109.79017 * 221.69159 * 16 15 14 19 19 N 1.47207 * 106.37965 * 95.21847 * 18 16 15 20 20 C 1.36936 * 126.70401 * 211.28583 * 19 18 16 21 21 H 1.08005 * 120.00285 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00206 * 0.02562 * 20 19 18 23 23 N 1.31625 * 119.99581 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00358 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46856 * 90.00390 * 24 22 20 26 26 H 1.48494 * 109.47078 * 210.00208 * 24 22 20 27 27 H 1.48498 * 109.47020 * 330.00321 * 24 22 20 28 28 C 1.48679 * 107.09374 * 30.74383 * 19 18 16 29 29 H 1.08997 * 109.46626 * 53.90691 * 1 2 3 30 30 H 1.08998 * 109.47160 * 173.90502 * 1 2 3 31 31 H 1.08999 * 109.47298 * 293.90802 * 1 2 3 32 32 H 1.08997 * 109.46928 * 239.99983 * 2 1 3 33 33 H 1.08994 * 109.46648 * 119.99982 * 2 1 3 34 34 H 1.08994 * 109.47244 * 64.40351 * 5 3 2 35 35 H 1.09003 * 109.47232 * 304.40428 * 5 3 2 36 36 H 1.08996 * 109.47401 * 55.74337 * 6 5 3 37 37 H 0.96998 * 119.99840 * 359.97438 * 11 9 3 38 38 H 1.09004 * 110.53817 * 21.40240 * 13 12 11 39 39 H 1.09005 * 110.53331 * 144.03497 * 13 12 11 40 40 H 1.09003 * 110.90042 * 78.15128 * 14 13 12 41 41 H 1.08994 * 110.90880 * 201.70973 * 14 13 12 42 42 H 1.08998 * 110.53474 * 158.67224 * 15 14 13 43 43 H 1.09004 * 110.53104 * 281.43625 * 15 14 13 44 44 H 1.09002 * 110.07347 * 214.44895 * 18 16 15 45 45 H 1.08996 * 110.07487 * 335.98914 * 18 16 15 46 46 H 0.96999 * 119.99839 * 179.97438 * 23 22 20 47 47 H 1.09000 * 110.90720 * 210.52915 * 28 19 18 48 48 H 1.09002 * 109.94557 * 88.51782 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5997 1.9836 -0.8375 5 6 1.6442 2.1234 1.3117 6 6 2.0573 3.5959 1.2668 7 9 3.4513 3.6871 1.1915 8 9 1.6096 4.2413 2.4245 9 6 3.5411 1.4446 -0.1341 10 8 4.2381 1.3273 0.8515 11 7 4.1090 1.5768 -1.3492 12 6 5.5682 1.5782 -1.4795 13 6 6.2091 2.7469 -0.7017 14 6 6.4265 3.8390 -1.7807 15 6 6.9023 3.0040 -2.9975 16 6 6.0133 1.7434 -2.9537 17 1 5.1603 1.8430 -3.6250 18 6 6.8602 0.4979 -3.2639 19 7 7.2654 -0.0628 -1.9645 20 6 8.4238 -0.7396 -1.6905 21 1 8.6118 -1.1066 -0.6923 22 6 9.3567 -0.9541 -2.6958 23 7 9.1280 -0.5064 -3.9123 24 14 10.9374 -1.8768 -2.3220 25 1 10.7279 -3.3293 -2.5483 26 1 12.0189 -1.3877 -3.2143 27 1 11.3218 -1.6467 -0.9062 28 6 6.1838 0.2550 -0.9951 29 1 -0.3632 0.6054 -0.8304 30 1 -0.3633 -1.0218 -0.1091 31 1 -0.3634 0.4165 0.9395 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1472 1.6301 2.1434 35 1 0.5649 2.0528 1.4465 36 1 1.6143 4.0710 0.3916 37 1 3.5515 1.6701 -2.1375 38 1 5.5334 3.1057 0.0747 39 1 7.1608 2.4408 -0.2674 40 1 5.4931 4.3556 -2.0046 41 1 7.1951 4.5462 -1.4691 42 1 6.7412 3.5536 -3.9249 43 1 7.9530 2.7349 -2.8890 44 1 6.2665 -0.2301 -3.8167 45 1 7.7411 0.7787 -3.8412 46 1 9.7800 -0.6559 -4.6147 47 1 6.5861 0.3756 0.0108 48 1 5.4315 -0.5337 -1.0056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111775021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:43 Heat of formation + Delta-G solvation = -150.265240 kcal Electronic energy + Delta-G solvation = -30869.408815 eV Core-core repulsion = 26593.924618 eV Total energy + Delta-G solvation = -4275.484197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.80480 -47.84067 -41.62889 -39.81565 -36.64514 -36.14237 -34.60142 -33.35484 -31.88494 -31.01262 -29.63827 -27.67551 -26.29408 -26.10303 -23.91322 -23.16041 -22.31138 -21.79654 -20.40692 -20.27180 -19.07114 -18.58042 -18.07701 -17.66303 -17.38657 -17.14930 -16.70614 -15.97578 -15.59383 -15.40966 -15.27628 -15.03237 -14.93094 -14.70260 -14.66556 -14.50609 -14.29149 -14.08325 -13.75975 -13.46491 -13.27936 -13.06691 -12.89977 -12.82015 -12.70374 -12.47721 -12.15415 -12.13223 -12.08040 -12.03175 -11.79223 -11.71312 -11.67697 -11.63452 -11.56321 -11.48463 -11.41536 -10.75592 -10.49015 -9.94278 -8.91394 -7.76287 -5.23642 1.44614 1.46044 1.55072 1.78763 2.21329 2.48740 2.94099 3.29528 3.39362 3.46254 3.49453 3.62781 3.74054 3.83051 3.90454 3.96818 4.10603 4.11880 4.37658 4.42677 4.43461 4.48745 4.52851 4.57795 4.63041 4.72813 4.79799 4.82861 4.88166 4.94320 4.98493 5.01592 5.07583 5.12659 5.20732 5.25103 5.26615 5.32134 5.41644 5.47028 5.47476 5.62785 5.76169 5.86328 6.38053 6.73767 7.10471 7.46219 7.73908 8.41184 9.21875 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.017204 B = 0.003575 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.090903 B = 7830.069616 C = 8377.262688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.094 4.094 4 H 0.135 0.865 5 C -0.153 4.153 6 C 0.246 3.754 7 F -0.219 7.219 8 F -0.221 7.221 9 C 0.506 3.494 10 O -0.567 6.567 11 N -0.701 5.701 12 C 0.176 3.824 13 C -0.111 4.111 14 C -0.109 4.109 15 C -0.105 4.105 16 C -0.101 4.101 17 H 0.107 0.893 18 C 0.144 3.856 19 N -0.615 5.615 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.058 4.058 23 N -0.941 5.941 24 Si 0.978 3.022 25 H -0.286 1.286 26 H -0.287 1.287 27 H -0.276 1.276 28 C 0.143 3.857 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.137 0.863 36 H 0.150 0.850 37 H 0.413 0.587 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.038 0.962 44 H -0.018 1.018 45 H 0.102 0.898 46 H 0.250 0.750 47 H 0.024 0.976 48 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.887 9.834 2.932 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.115 4.115 4 H 0.153 0.847 5 C -0.191 4.191 6 C 0.193 3.807 7 F -0.200 7.200 8 F -0.202 7.202 9 C 0.293 3.707 10 O -0.445 6.445 11 N -0.353 5.353 12 C 0.088 3.912 13 C -0.150 4.150 14 C -0.146 4.146 15 C -0.143 4.143 16 C -0.121 4.121 17 H 0.125 0.875 18 C 0.019 3.981 19 N -0.340 5.340 20 C -0.368 4.368 21 H 0.087 0.913 22 C -0.251 4.251 23 N -0.590 5.590 24 Si 0.806 3.194 25 H -0.213 1.213 26 H -0.212 1.212 27 H -0.202 1.202 28 C 0.017 3.983 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.155 0.845 36 H 0.167 0.833 37 H 0.250 0.750 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.057 0.943 44 H 0.000 1.000 45 H 0.120 0.880 46 H 0.060 0.940 47 H 0.043 0.957 48 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -21.162 9.679 3.574 23.543 hybrid contribution 1.293 -1.013 0.191 1.654 sum -19.869 8.666 3.765 22.001 Atomic orbital electron populations 1.21811 0.92373 1.02882 1.03310 1.21406 0.98326 0.92753 1.02370 1.21368 0.89800 1.00118 1.00216 0.84730 1.22654 1.05584 0.92225 0.98638 1.22558 0.75805 0.95066 0.87303 1.93026 1.33260 1.97145 1.96595 1.92948 1.88989 1.83767 1.54502 1.21234 0.91734 0.75029 0.82661 1.90715 1.65512 1.49633 1.38650 1.45923 1.05770 1.74116 1.09533 1.21344 0.80059 0.94146 0.95697 1.22556 0.99046 0.95290 0.98064 1.22529 1.01626 0.96337 0.94095 1.22357 0.98193 0.94713 0.99030 1.22917 0.98737 0.96615 0.93833 0.87463 1.21831 0.97961 0.90560 0.87775 1.45031 1.17856 1.64628 1.06445 1.19368 0.94584 1.27408 0.95486 0.91346 1.25502 1.01672 1.02476 0.95429 1.69826 1.36148 1.51614 1.01459 0.85094 0.79106 0.77963 0.77259 1.21305 1.21250 1.20169 1.21814 0.89888 0.94222 0.92423 0.90389 0.92205 0.91446 0.91548 0.93080 0.91002 0.84482 0.83313 0.74966 0.91061 0.94562 0.89263 0.91493 0.89499 0.94338 1.00012 0.88047 0.94033 0.95731 0.97944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.53 71.98 0.69 -0.61 16 2 C -0.11 -1.71 5.38 30.60 0.16 -1.54 16 3 C -0.09 -1.47 2.19 -11.54 -0.03 -1.49 16 4 H 0.13 0.99 8.11 -2.39 -0.02 0.97 16 5 C -0.15 -2.35 4.67 30.59 0.14 -2.20 16 6 C 0.25 4.26 5.27 71.98 0.38 4.63 16 7 F -0.22 -6.03 13.40 44.97 0.60 -5.43 16 8 F -0.22 -4.63 17.34 44.97 0.78 -3.85 16 9 C 0.51 13.76 4.61 87.66 0.40 14.16 16 10 O -0.57 -21.28 12.80 -3.04 -0.04 -21.31 16 11 N -0.70 -18.74 5.19 -416.83 -2.16 -20.90 16 12 C 0.18 6.35 0.93 4.95 0.00 6.36 16 13 C -0.11 -4.07 5.50 31.74 0.17 -3.90 16 14 C -0.11 -3.20 6.92 32.00 0.22 -2.98 16 15 C -0.11 -3.53 6.25 31.74 0.20 -3.33 16 16 C -0.10 -3.61 3.63 -9.44 -0.03 -3.64 16 17 H 0.11 3.00 7.71 -2.39 -0.02 2.98 16 18 C 0.14 7.05 5.62 86.51 0.49 7.53 16 19 N -0.61 -33.37 3.42 -691.55 -2.37 -35.73 16 20 C -0.24 -14.17 10.33 84.03 0.87 -13.31 16 21 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 22 C -0.06 -3.35 5.49 84.86 0.47 -2.89 16 23 N -0.94 -55.60 10.08 21.65 0.22 -55.38 16 24 Si 0.98 46.88 29.55 68.60 2.03 48.91 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 C 0.14 6.78 5.36 86.22 0.46 7.25 16 29 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.48 6.78 -2.39 -0.02 0.46 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.58 7.70 -2.39 -0.02 1.56 16 35 H 0.14 1.11 6.52 -2.39 -0.02 1.09 16 36 H 0.15 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.41 7.72 8.27 -92.71 -0.77 6.95 16 38 H 0.07 2.64 5.65 -2.38 -0.01 2.63 16 39 H 0.04 1.58 7.56 -2.38 -0.02 1.56 16 40 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 42 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.04 1.61 7.61 -2.38 -0.02 1.59 16 44 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 45 H 0.10 5.59 4.93 -2.39 -0.01 5.58 16 46 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 47 H 0.02 1.27 7.52 -2.39 -0.02 1.25 16 48 H 0.00 0.13 8.05 -2.39 -0.02 0.12 16 Total: -1.00 -77.46 370.62 3.86 -73.60 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.20 Total: 16.07 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 4.60 Total: 4.04 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -4.31 Total: -112.02 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.04 Total: -21.31 kcal Atomic # 9 Polarization: -10.66 SS G_CDS: 1.38 Total: -9.28 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -77.46 3.86 -73.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111775021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.665 kcal (2) G-P(sol) polarization free energy of solvation -77.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds