Wall clock time and date at job start Tue Mar 31 2020 15:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47161 * 2 1 4 4 H 1.09004 * 109.47023 * 302.97448 * 3 2 1 5 5 C 1.53002 * 109.47587 * 182.97178 * 3 2 1 6 6 C 1.53001 * 109.46628 * 64.99616 * 5 3 2 7 7 F 1.39904 * 109.46720 * 175.00074 * 6 5 3 8 8 F 1.39894 * 109.47541 * 295.00368 * 6 5 3 9 9 C 1.50702 * 109.47250 * 62.97168 * 3 2 1 10 10 O 1.21282 * 119.99717 * 26.60805 * 9 3 2 11 11 N 1.34777 * 120.00082 * 206.60737 * 9 3 2 12 12 C 1.46503 * 119.99832 * 185.31104 * 11 9 3 13 13 C 1.54318 * 111.69250 * 298.98401 * 12 11 9 14 14 C 1.55051 * 103.94112 * 262.78763 * 13 12 11 15 15 C 1.55055 * 102.10987 * 319.94847 * 14 13 12 16 16 C 1.54329 * 103.93705 * 40.05416 * 15 14 13 17 17 H 1.08990 * 111.01805 * 96.81223 * 16 15 14 18 18 C 1.53779 * 109.78545 * 221.69140 * 16 15 14 19 19 N 1.47209 * 106.37762 * 95.22001 * 18 16 15 20 20 C 1.36941 * 126.69902 * 211.28186 * 19 18 16 21 21 H 1.08005 * 119.99679 * 180.02562 * 20 19 18 22 22 C 1.38812 * 120.00454 * 0.02562 * 20 19 18 23 23 N 1.31624 * 119.99407 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00230 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46567 * 90.00321 * 24 22 20 26 26 H 1.48501 * 109.46787 * 209.99994 * 24 22 20 27 27 H 1.48494 * 109.47032 * 330.00567 * 24 22 20 28 28 C 1.48673 * 107.09877 * 30.73508 * 19 18 16 29 29 H 1.08994 * 109.47413 * 54.78209 * 1 2 3 30 30 H 1.09000 * 109.46926 * 174.78462 * 1 2 3 31 31 H 1.09001 * 109.47405 * 294.78036 * 1 2 3 32 32 H 1.08997 * 109.47541 * 240.00018 * 2 1 3 33 33 H 1.09001 * 109.47379 * 119.99932 * 2 1 3 34 34 H 1.08995 * 109.47564 * 184.99904 * 5 3 2 35 35 H 1.08995 * 109.46985 * 305.00380 * 5 3 2 36 36 H 1.09004 * 109.46902 * 55.00563 * 6 5 3 37 37 H 0.96998 * 120.00361 * 5.31205 * 11 9 3 38 38 H 1.09005 * 110.53418 * 21.40462 * 13 12 11 39 39 H 1.09004 * 110.53510 * 144.03076 * 13 12 11 40 40 H 1.08998 * 110.90183 * 78.14624 * 14 13 12 41 41 H 1.08999 * 110.91018 * 201.70672 * 14 13 12 42 42 H 1.09003 * 110.53333 * 158.66513 * 15 14 13 43 43 H 1.09001 * 110.53551 * 281.43838 * 15 14 13 44 44 H 1.09000 * 110.06973 * 214.44267 * 18 16 15 45 45 H 1.08996 * 110.07541 * 335.98690 * 18 16 15 46 46 H 0.97003 * 119.99531 * 179.97438 * 23 22 20 47 47 H 1.09000 * 110.91498 * 210.52924 * 28 19 18 48 48 H 1.09003 * 109.93943 * 88.51833 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6337 1.9715 -0.8622 5 6 3.5681 1.4432 -0.0748 6 6 4.0133 0.8564 -1.4158 7 9 5.4035 0.9614 -1.5323 8 9 3.6401 -0.4902 -1.4826 9 6 1.5987 2.1313 1.2656 10 8 1.3869 1.4815 2.2675 11 7 1.4393 3.4695 1.2842 12 6 1.1240 4.1523 2.5414 13 6 -0.2150 3.6658 3.1345 14 6 -1.2401 4.7301 2.6649 15 6 -0.4389 6.0476 2.8278 16 6 0.9803 5.6818 2.3443 17 1 1.1254 5.9709 1.3035 18 6 2.0269 6.3116 3.2785 19 7 2.3800 5.2766 4.2640 20 6 2.7591 5.4798 5.5641 21 1 2.9959 4.6363 6.1957 22 6 2.8391 6.7699 6.0703 23 7 2.5501 7.7978 5.3006 24 14 3.3555 7.0470 7.8439 25 1 4.8316 7.1950 7.9123 26 1 2.7099 8.2805 8.3605 27 1 2.9358 5.8858 8.6688 28 6 2.2354 3.9609 3.5869 29 1 -0.3634 0.5926 -0.8395 30 1 -0.3633 -1.0234 -0.0934 31 1 -0.3634 0.4307 0.9330 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9358 2.4654 0.0146 35 1 3.9719 0.8395 0.7379 36 1 3.5381 1.4059 -2.2285 37 1 1.5334 3.9806 0.4651 38 1 -0.4744 2.6840 2.7383 39 1 -0.1628 3.6361 4.2228 40 1 -1.5174 4.5699 1.6230 41 1 -2.1225 4.7292 3.3047 42 1 -0.8646 6.8335 2.2039 43 1 -0.4191 6.3563 3.8729 44 1 2.9096 6.6027 2.7091 45 1 1.6035 7.1799 3.7833 46 1 2.6056 8.6993 5.6545 47 1 1.9501 3.1863 4.2987 48 1 3.1699 3.6915 3.0946 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111775022.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:47 Heat of formation + Delta-G solvation = -127.721404 kcal Electronic energy + Delta-G solvation = -30396.299027 eV Core-core repulsion = 26121.792404 eV Total energy + Delta-G solvation = -4274.506622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.26404 -47.26863 -40.42376 -38.54233 -35.43106 -34.37745 -33.43932 -31.50610 -31.36026 -29.46539 -28.00501 -26.52141 -24.66502 -24.40489 -22.87727 -22.56072 -20.71722 -20.56313 -19.22549 -18.85465 -18.04577 -17.59234 -17.07831 -16.88339 -16.14030 -15.71774 -14.88175 -14.75535 -14.39531 -14.27502 -14.25869 -13.88936 -13.77690 -13.62986 -13.48116 -13.41986 -13.11120 -13.08559 -12.61416 -12.52428 -12.06096 -11.88268 -11.36474 -11.34211 -11.18940 -11.05676 -10.99355 -10.91799 -10.80460 -10.66639 -10.54720 -10.31306 -10.25244 -10.06335 -9.97571 -9.95173 -9.68015 -9.31639 -8.75980 -8.61278 -6.87347 -5.64975 -3.09079 2.70392 3.25350 3.40044 3.45429 3.47127 3.63501 3.96753 4.19702 4.24152 4.48004 4.59993 4.73810 4.90488 4.91732 5.10788 5.14718 5.25978 5.35213 5.39088 5.43390 5.49277 5.60884 5.63606 5.71161 5.83469 5.86200 5.95424 5.98996 6.10075 6.11508 6.16036 6.19644 6.28404 6.35188 6.38738 6.55488 6.63158 6.74313 6.81740 6.94323 7.11265 7.40058 7.60430 7.74120 7.83091 8.37355 8.45926 9.20789 9.79928 10.46968 11.36258 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.003442 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.809878 B = 8133.732244 C = 9054.532385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.105 4.105 4 H 0.092 0.908 5 C -0.163 4.163 6 C 0.266 3.734 7 F -0.205 7.205 8 F -0.199 7.199 9 C 0.519 3.481 10 O -0.525 6.525 11 N -0.711 5.711 12 C 0.158 3.842 13 C -0.112 4.112 14 C -0.125 4.125 15 C -0.109 4.109 16 C -0.112 4.112 17 H 0.068 0.932 18 C 0.142 3.858 19 N -0.594 5.594 20 C -0.215 4.215 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.923 5.923 24 Si 0.915 3.085 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.138 3.862 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.394 0.606 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.003 0.997 45 H 0.130 0.870 46 H 0.252 0.748 47 H 0.052 0.948 48 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.063 -10.140 -16.493 19.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.166 4.166 3 C -0.127 4.127 4 H 0.110 0.890 5 C -0.202 4.202 6 C 0.212 3.788 7 F -0.186 7.186 8 F -0.181 7.181 9 C 0.304 3.696 10 O -0.401 6.401 11 N -0.361 5.361 12 C 0.071 3.929 13 C -0.150 4.150 14 C -0.163 4.163 15 C -0.147 4.147 16 C -0.133 4.133 17 H 0.086 0.914 18 C 0.017 3.983 19 N -0.318 5.318 20 C -0.343 4.343 21 H 0.096 0.904 22 C -0.207 4.207 23 N -0.572 5.572 24 Si 0.745 3.255 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.207 1.207 28 C 0.011 3.989 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.228 0.772 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.021 0.979 45 H 0.147 0.853 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -4.125 -10.456 -15.558 19.193 hybrid contribution 0.518 0.376 0.339 0.724 sum -3.606 -10.080 -15.219 18.607 Atomic orbital electron populations 1.21789 0.95588 1.01647 1.02033 1.21863 0.96480 0.93690 1.04536 1.21334 0.94687 0.99003 0.97634 0.88990 1.22610 0.95871 1.04630 0.97075 1.21909 0.76819 0.79521 1.00514 1.93005 1.32341 1.96014 1.97283 1.92888 1.90321 1.37203 1.97637 1.20226 0.77430 0.82299 0.89666 1.90704 1.49510 1.64720 1.35148 1.46149 1.71666 1.06864 1.11464 1.21851 0.95891 0.91835 0.83281 1.22655 0.93230 0.98014 1.01149 1.22595 0.97754 0.96073 0.99834 1.22442 0.93794 0.96060 1.02383 1.23022 0.98076 0.92613 0.99563 0.91410 1.21980 0.92810 0.94900 0.88644 1.44786 1.78921 0.99431 1.08708 1.19124 1.37169 0.92521 0.85501 0.90414 1.24742 1.02286 0.95271 0.98402 1.69584 1.55582 0.97862 1.34208 0.86057 0.78081 0.77309 0.84012 1.21679 1.21648 1.20686 1.21815 0.93845 0.90054 0.93168 0.93258 0.92647 0.92051 0.89211 0.90499 0.87965 0.88383 0.87083 0.77181 0.91524 0.90529 0.92590 0.92195 0.92577 0.90187 0.97901 0.85322 0.93701 0.92947 0.96762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.59 37.15 0.36 -1.17 16 2 C -0.13 -1.28 4.66 -26.74 -0.12 -1.41 16 3 C -0.10 -1.00 2.22 -91.77 -0.20 -1.20 16 4 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 5 C -0.16 -1.47 5.00 -26.73 -0.13 -1.61 16 6 C 0.27 2.09 5.25 37.16 0.20 2.28 16 7 F -0.21 -2.10 17.34 2.25 0.04 -2.06 16 8 F -0.20 -1.87 14.11 2.25 0.03 -1.84 16 9 C 0.52 7.06 5.52 -10.98 -0.06 7.00 16 10 O -0.53 -9.19 13.12 5.56 0.07 -9.11 16 11 N -0.71 -9.64 5.19 -45.68 -0.24 -9.88 16 12 C 0.16 2.75 0.93 -129.73 -0.12 2.63 16 13 C -0.11 -1.93 5.48 -24.96 -0.14 -2.07 16 14 C -0.12 -1.88 6.92 -24.56 -0.17 -2.05 16 15 C -0.11 -1.84 6.25 -24.95 -0.16 -1.99 16 16 C -0.11 -2.00 3.63 -88.53 -0.32 -2.32 16 17 H 0.07 1.03 7.71 -51.93 -0.40 0.63 16 18 C 0.14 3.31 5.62 -3.25 -0.02 3.29 16 19 N -0.59 -15.00 3.42 -169.93 -0.58 -15.58 16 20 C -0.21 -5.95 10.33 -15.06 -0.16 -6.11 16 21 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 22 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 23 N -0.92 -26.14 10.08 55.49 0.56 -25.59 16 24 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.14 3.01 5.48 -2.43 -0.01 3.00 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.76 6.91 -51.93 -0.36 0.40 16 32 H 0.09 0.79 5.23 -51.93 -0.27 0.52 16 33 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.39 4.16 8.30 -40.82 -0.34 3.82 16 38 H 0.07 1.14 6.48 -51.93 -0.34 0.81 16 39 H 0.08 1.50 7.56 -51.93 -0.39 1.11 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.60 7.61 -51.93 -0.40 1.20 16 44 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 45 H 0.13 3.36 4.93 -51.93 -0.26 3.10 16 46 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.05 1.21 7.57 -51.93 -0.39 0.82 16 48 H 0.01 0.33 8.05 -51.93 -0.42 -0.09 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -31.24 372.16 -8.43 -39.67 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.74 Total: 3.99 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.16 Total: -2.16 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.26 Total: -51.05 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.11 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.07 Total: -3.90 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.24 -8.43 -39.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111775022.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.052 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds