Wall clock time and date at job start Tue Mar 31 2020 15:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47161 * 2 1 4 4 H 1.09004 * 109.47023 * 302.97448 * 3 2 1 5 5 C 1.53002 * 109.47587 * 182.97178 * 3 2 1 6 6 C 1.53001 * 109.46628 * 64.99616 * 5 3 2 7 7 F 1.39904 * 109.46720 * 175.00074 * 6 5 3 8 8 F 1.39894 * 109.47541 * 295.00368 * 6 5 3 9 9 C 1.50702 * 109.47250 * 62.97168 * 3 2 1 10 10 O 1.21282 * 119.99717 * 26.60805 * 9 3 2 11 11 N 1.34777 * 120.00082 * 206.60737 * 9 3 2 12 12 C 1.46503 * 119.99832 * 185.31104 * 11 9 3 13 13 C 1.54318 * 111.69250 * 298.98401 * 12 11 9 14 14 C 1.55051 * 103.94112 * 262.78763 * 13 12 11 15 15 C 1.55055 * 102.10987 * 319.94847 * 14 13 12 16 16 C 1.54329 * 103.93705 * 40.05416 * 15 14 13 17 17 H 1.08990 * 111.01805 * 96.81223 * 16 15 14 18 18 C 1.53779 * 109.78545 * 221.69140 * 16 15 14 19 19 N 1.47209 * 106.37762 * 95.22001 * 18 16 15 20 20 C 1.36941 * 126.69902 * 211.28186 * 19 18 16 21 21 H 1.08005 * 119.99679 * 180.02562 * 20 19 18 22 22 C 1.38812 * 120.00454 * 0.02562 * 20 19 18 23 23 N 1.31624 * 119.99407 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00230 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46567 * 90.00321 * 24 22 20 26 26 H 1.48501 * 109.46787 * 209.99994 * 24 22 20 27 27 H 1.48494 * 109.47032 * 330.00567 * 24 22 20 28 28 C 1.48673 * 107.09877 * 30.73508 * 19 18 16 29 29 H 1.08994 * 109.47413 * 54.78209 * 1 2 3 30 30 H 1.09000 * 109.46926 * 174.78462 * 1 2 3 31 31 H 1.09001 * 109.47405 * 294.78036 * 1 2 3 32 32 H 1.08997 * 109.47541 * 240.00018 * 2 1 3 33 33 H 1.09001 * 109.47379 * 119.99932 * 2 1 3 34 34 H 1.08995 * 109.47564 * 184.99904 * 5 3 2 35 35 H 1.08995 * 109.46985 * 305.00380 * 5 3 2 36 36 H 1.09004 * 109.46902 * 55.00563 * 6 5 3 37 37 H 0.96998 * 120.00361 * 5.31205 * 11 9 3 38 38 H 1.09005 * 110.53418 * 21.40462 * 13 12 11 39 39 H 1.09004 * 110.53510 * 144.03076 * 13 12 11 40 40 H 1.08998 * 110.90183 * 78.14624 * 14 13 12 41 41 H 1.08999 * 110.91018 * 201.70672 * 14 13 12 42 42 H 1.09003 * 110.53333 * 158.66513 * 15 14 13 43 43 H 1.09001 * 110.53551 * 281.43838 * 15 14 13 44 44 H 1.09000 * 110.06973 * 214.44267 * 18 16 15 45 45 H 1.08996 * 110.07541 * 335.98690 * 18 16 15 46 46 H 0.97003 * 119.99531 * 179.97438 * 23 22 20 47 47 H 1.09000 * 110.91498 * 210.52924 * 28 19 18 48 48 H 1.09003 * 109.93943 * 88.51833 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6337 1.9715 -0.8622 5 6 3.5681 1.4432 -0.0748 6 6 4.0133 0.8564 -1.4158 7 9 5.4035 0.9614 -1.5323 8 9 3.6401 -0.4902 -1.4826 9 6 1.5987 2.1313 1.2656 10 8 1.3869 1.4815 2.2675 11 7 1.4393 3.4695 1.2842 12 6 1.1240 4.1523 2.5414 13 6 -0.2150 3.6658 3.1345 14 6 -1.2401 4.7301 2.6649 15 6 -0.4389 6.0476 2.8278 16 6 0.9803 5.6818 2.3443 17 1 1.1254 5.9709 1.3035 18 6 2.0269 6.3116 3.2785 19 7 2.3800 5.2766 4.2640 20 6 2.7591 5.4798 5.5641 21 1 2.9959 4.6363 6.1957 22 6 2.8391 6.7699 6.0703 23 7 2.5501 7.7978 5.3006 24 14 3.3555 7.0470 7.8439 25 1 4.8316 7.1950 7.9123 26 1 2.7099 8.2805 8.3605 27 1 2.9358 5.8858 8.6688 28 6 2.2354 3.9609 3.5869 29 1 -0.3634 0.5926 -0.8395 30 1 -0.3633 -1.0234 -0.0934 31 1 -0.3634 0.4307 0.9330 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9358 2.4654 0.0146 35 1 3.9719 0.8395 0.7379 36 1 3.5381 1.4059 -2.2285 37 1 1.5334 3.9806 0.4651 38 1 -0.4744 2.6840 2.7383 39 1 -0.1628 3.6361 4.2228 40 1 -1.5174 4.5699 1.6230 41 1 -2.1225 4.7292 3.3047 42 1 -0.8646 6.8335 2.2039 43 1 -0.4191 6.3563 3.8729 44 1 2.9096 6.6027 2.7091 45 1 1.6035 7.1799 3.7833 46 1 2.6056 8.6993 5.6545 47 1 1.9501 3.1863 4.2987 48 1 3.1699 3.6915 3.0946 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111775022.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:46 Heat of formation + Delta-G solvation = -146.872666 kcal Electronic energy + Delta-G solvation = -30397.129488 eV Core-core repulsion = 26121.792404 eV Total energy + Delta-G solvation = -4275.337084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.93267 -47.95777 -41.70981 -39.87403 -36.44048 -36.10486 -34.68673 -33.36160 -32.22339 -31.02217 -29.59821 -27.51221 -26.30720 -26.12320 -23.68721 -23.50760 -22.33164 -21.90896 -20.38632 -20.28673 -19.06979 -18.75342 -18.26421 -17.69250 -17.22913 -17.04051 -16.71154 -16.02860 -15.59747 -15.43271 -15.33105 -15.10552 -14.98286 -14.75303 -14.60488 -14.53536 -14.52658 -14.27834 -13.87071 -13.60046 -13.33726 -13.08496 -12.85175 -12.81390 -12.73677 -12.17565 -12.13447 -12.06591 -12.04638 -11.93290 -11.82398 -11.75424 -11.71208 -11.65259 -11.60661 -11.57131 -11.41465 -10.75901 -10.51429 -9.98979 -8.91813 -7.76630 -5.23920 1.45003 1.45983 1.54967 1.64138 2.16233 2.48006 2.95282 3.29426 3.37138 3.46955 3.49897 3.54193 3.67325 3.82347 3.88407 3.91079 4.02126 4.20843 4.31487 4.41404 4.41995 4.51190 4.52008 4.61685 4.65836 4.68697 4.72921 4.80000 4.89684 4.92934 4.94071 4.98235 5.05173 5.11797 5.20600 5.24401 5.28907 5.35948 5.41655 5.46033 5.47460 5.62377 5.74712 5.84514 6.38159 6.69327 7.10239 7.38296 7.73685 8.40423 9.21397 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.003442 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.809878 B = 8133.732244 C = 9054.532385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.093 4.093 4 H 0.139 0.861 5 C -0.163 4.163 6 C 0.266 3.734 7 F -0.221 7.221 8 F -0.209 7.209 9 C 0.516 3.484 10 O -0.569 6.569 11 N -0.700 5.700 12 C 0.173 3.827 13 C -0.109 4.109 14 C -0.109 4.109 15 C -0.106 4.106 16 C -0.100 4.100 17 H 0.108 0.892 18 C 0.143 3.857 19 N -0.614 5.614 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.057 4.057 23 N -0.940 5.940 24 Si 0.976 3.024 25 H -0.287 1.287 26 H -0.287 1.287 27 H -0.276 1.276 28 C 0.140 3.860 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.032 0.968 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.162 0.838 37 H 0.415 0.585 38 H 0.068 0.932 39 H 0.039 0.961 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.038 0.962 44 H -0.017 1.017 45 H 0.102 0.898 46 H 0.249 0.751 47 H 0.026 0.974 48 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.219 -9.990 -19.687 22.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.114 4.114 4 H 0.157 0.843 5 C -0.201 4.201 6 C 0.213 3.787 7 F -0.202 7.202 8 F -0.191 7.191 9 C 0.303 3.697 10 O -0.447 6.447 11 N -0.352 5.352 12 C 0.085 3.915 13 C -0.148 4.148 14 C -0.147 4.147 15 C -0.144 4.144 16 C -0.120 4.120 17 H 0.126 0.874 18 C 0.018 3.982 19 N -0.339 5.339 20 C -0.368 4.368 21 H 0.087 0.913 22 C -0.250 4.250 23 N -0.590 5.590 24 Si 0.805 3.195 25 H -0.214 1.214 26 H -0.213 1.213 27 H -0.201 1.201 28 C 0.014 3.986 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.127 0.873 33 H 0.064 0.936 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.179 0.821 37 H 0.253 0.747 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.057 0.943 44 H 0.001 0.999 45 H 0.119 0.881 46 H 0.060 0.940 47 H 0.044 0.956 48 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -5.280 -10.314 -18.800 22.084 hybrid contribution 0.943 0.277 1.390 1.702 sum -4.337 -10.037 -17.410 20.559 Atomic orbital electron populations 1.21770 0.95318 1.02260 1.01450 1.21855 0.96661 0.93916 1.03893 1.21339 0.94899 0.98528 0.96670 0.84307 1.22582 0.95452 1.04699 0.97402 1.22270 0.76155 0.79245 1.01019 1.92977 1.33883 1.96047 1.97305 1.92864 1.90289 1.38255 1.97656 1.21013 0.76142 0.81960 0.90588 1.90703 1.51146 1.65641 1.37258 1.45938 1.71473 1.07058 1.10726 1.21397 0.94011 0.92201 0.83887 1.22546 0.94147 0.99159 0.98930 1.22547 0.96837 0.93378 1.01921 1.22363 0.93612 0.97985 1.00429 1.22915 0.96809 0.91953 1.00350 0.87371 1.21839 0.93319 0.94262 0.88787 1.45009 1.79053 1.01277 1.08549 1.19361 1.37823 0.92668 0.86960 0.91289 1.25486 1.02494 0.94976 1.02061 1.69825 1.55901 0.97837 1.35437 0.85113 0.77547 0.77177 0.79696 1.21401 1.21303 1.20121 1.21842 0.95059 0.88041 0.93691 0.90798 0.92166 0.94907 0.87328 0.93634 0.87273 0.91172 0.82125 0.74699 0.91325 0.94232 0.89169 0.91332 0.89558 0.94326 0.99947 0.88089 0.94045 0.95563 0.97749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.59 71.98 0.69 -1.98 16 2 C -0.13 -2.28 4.66 30.59 0.14 -2.14 16 3 C -0.09 -1.49 2.22 -11.54 -0.03 -1.52 16 4 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 5 C -0.16 -2.61 5.00 30.60 0.15 -2.46 16 6 C 0.27 3.33 5.25 71.98 0.38 3.71 16 7 F -0.22 -4.08 17.34 44.97 0.78 -3.30 16 8 F -0.21 -3.41 14.11 44.97 0.63 -2.77 16 9 C 0.52 13.32 5.52 87.66 0.48 13.80 16 10 O -0.57 -20.31 13.12 -3.04 -0.04 -20.35 16 11 N -0.70 -17.31 5.19 -416.82 -2.16 -19.47 16 12 C 0.17 5.92 0.93 4.96 0.00 5.92 16 13 C -0.11 -3.74 5.48 31.74 0.17 -3.57 16 14 C -0.11 -3.00 6.92 32.00 0.22 -2.78 16 15 C -0.11 -3.39 6.25 31.75 0.20 -3.19 16 16 C -0.10 -3.42 3.63 -9.44 -0.03 -3.45 16 17 H 0.11 2.85 7.71 -2.39 -0.02 2.83 16 18 C 0.14 6.81 5.62 86.51 0.49 7.30 16 19 N -0.61 -32.42 3.42 -691.55 -2.37 -34.78 16 20 C -0.24 -13.87 10.33 84.03 0.87 -13.00 16 21 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 22 C -0.06 -3.26 5.49 84.86 0.47 -2.80 16 23 N -0.94 -54.80 10.08 21.65 0.22 -54.58 16 24 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 28 C 0.14 6.38 5.48 86.22 0.47 6.85 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.03 0.77 6.91 -2.39 -0.02 0.75 16 32 H 0.11 1.59 5.23 -2.39 -0.01 1.58 16 33 H 0.04 1.11 7.75 -2.39 -0.02 1.09 16 34 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.16 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.42 6.89 8.30 -92.71 -0.77 6.12 16 38 H 0.07 2.32 6.48 -2.38 -0.02 2.31 16 39 H 0.04 1.63 7.56 -2.39 -0.02 1.61 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.04 1.56 7.61 -2.39 -0.02 1.54 16 44 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 45 H 0.10 5.45 4.93 -2.39 -0.01 5.43 16 46 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 47 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 48 H 0.00 0.22 8.05 -2.39 -0.02 0.20 16 Total: -1.00 -74.12 372.16 3.97 -70.16 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.20 Total: 16.12 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 4.68 Total: 0.70 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -4.31 Total: -108.84 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.04 Total: -20.35 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 1.41 Total: -6.07 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -74.12 3.97 -70.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111775022.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.715 kcal (2) G-P(sol) polarization free energy of solvation -74.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds