Wall clock time and date at job start Tue Mar 31 2020 15:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47662 * 2 1 4 4 H 1.09005 * 109.47194 * 302.84280 * 3 2 1 5 5 C 1.52995 * 109.47333 * 182.83916 * 3 2 1 6 6 C 1.52997 * 109.47120 * 65.00237 * 5 3 2 7 7 F 1.39905 * 109.47141 * 174.99711 * 6 5 3 8 8 F 1.39901 * 109.47349 * 294.99778 * 6 5 3 9 9 C 1.50702 * 109.46754 * 62.83806 * 3 2 1 10 10 O 1.21276 * 120.00151 * 35.12635 * 9 3 2 11 11 N 1.34780 * 120.00137 * 215.11972 * 9 3 2 12 12 C 1.46492 * 120.00082 * 175.05427 * 11 9 3 13 13 C 1.53954 * 113.58023 * 252.44339 * 12 11 9 14 14 C 1.52912 * 86.78341 * 220.66506 * 13 12 11 15 15 C 1.52909 * 121.13473 * 150.61676 * 14 13 12 16 16 C 1.53951 * 86.78126 * 100.81790 * 15 14 13 17 17 N 1.46500 * 113.57657 * 139.33282 * 16 15 14 18 18 C 1.36944 * 119.99914 * 107.28127 * 17 16 15 19 19 H 1.08001 * 119.99664 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99752 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00418 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99825 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46797 * 90.00022 * 22 20 18 24 24 H 1.48499 * 109.47080 * 210.00462 * 22 20 18 25 25 H 1.48501 * 109.46820 * 330.00462 * 22 20 18 26 26 C 1.52903 * 121.13195 * 259.17753 * 14 13 12 27 27 C 1.52910 * 88.04383 * 24.89658 * 14 13 12 28 28 H 1.09003 * 109.46815 * 54.83213 * 1 2 3 29 29 H 1.08999 * 109.47543 * 174.83839 * 1 2 3 30 30 H 1.09003 * 109.46938 * 294.83980 * 1 2 3 31 31 H 1.09004 * 109.46864 * 240.00130 * 2 1 3 32 32 H 1.09001 * 109.46862 * 120.00785 * 2 1 3 33 33 H 1.09003 * 109.47521 * 185.00051 * 5 3 2 34 34 H 1.09000 * 109.47050 * 304.99885 * 5 3 2 35 35 H 1.09000 * 109.47192 * 54.99911 * 6 5 3 36 36 H 0.97003 * 119.99586 * 354.77817 * 11 9 3 37 37 H 1.09001 * 112.82679 * 23.63648 * 12 11 9 38 38 H 1.09002 * 113.66227 * 335.13659 * 13 12 11 39 39 H 1.08997 * 113.66217 * 106.18754 * 13 12 11 40 40 H 1.08996 * 113.66311 * 215.29100 * 15 14 13 41 41 H 1.08994 * 113.66224 * 346.34855 * 15 14 13 42 42 H 1.08998 * 113.58136 * 270.12731 * 16 15 14 43 43 H 0.96998 * 120.00584 * 287.28066 * 17 16 15 44 44 H 0.96999 * 120.00159 * 180.02562 * 21 20 18 45 45 H 1.09001 * 113.67111 * 13.65273 * 26 14 13 46 46 H 1.09007 * 113.65898 * 144.61966 * 26 14 13 47 47 H 1.08994 * 113.66595 * 220.63184 * 27 14 13 48 48 H 1.09007 * 113.65843 * 89.57034 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6358 1.9708 -0.8634 5 6 3.5684 1.4429 -0.0714 6 6 4.0165 0.8552 -1.4111 7 9 5.4070 0.9600 -1.5245 8 9 3.6434 -0.4915 -1.4777 9 6 1.5960 2.1322 1.2642 10 8 1.5310 1.5105 2.3034 11 7 1.2713 3.4400 1.2399 12 6 0.7367 4.0845 2.4419 13 6 -0.7659 4.4069 2.3514 14 6 -0.4353 5.7316 3.0398 15 6 -1.2720 6.9857 2.7845 16 6 -1.9630 6.6931 4.1287 17 7 -2.2101 7.8918 4.9338 18 6 -3.4840 8.3760 5.0678 19 1 -4.3065 7.8743 4.5796 20 6 -3.7181 9.5115 5.8311 21 7 -2.7158 10.1232 6.4255 22 14 -5.4560 10.1716 6.0145 23 1 -6.1007 9.5463 7.1970 24 1 -5.4094 11.6446 6.1971 25 1 -6.2395 9.8485 4.7950 26 6 -0.6886 5.9305 4.5346 27 6 0.9853 5.6031 2.4889 28 1 -0.3633 0.5919 -0.8401 29 1 -0.3634 -1.0235 -0.0925 30 1 -0.3633 0.4317 0.9326 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 3.9360 2.4651 0.0180 34 1 3.9704 0.8398 0.7426 35 1 3.5431 1.4041 -2.2252 36 1 1.3953 3.9555 0.4275 37 1 1.0186 3.5680 3.3595 38 1 -1.1277 4.5231 1.3297 39 1 -1.3920 3.7463 2.9513 40 1 -0.6899 7.9072 2.7833 41 1 -1.9356 6.9011 1.9240 42 1 -2.8422 6.0553 4.0373 43 1 -1.4714 8.3426 5.3719 44 1 -2.8795 10.9164 6.9592 45 1 -0.8862 5.0031 5.0722 46 1 0.0584 6.5543 5.0256 47 1 1.7581 5.8982 3.1985 48 1 1.1157 6.0556 1.5058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121234017.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:49 Heat of formation + Delta-G solvation = -124.414142 kcal Electronic energy + Delta-G solvation = -28193.106125 eV Core-core repulsion = 23918.742917 eV Total energy + Delta-G solvation = -4274.363209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.92418 -47.95221 -41.73079 -40.59120 -37.37728 -36.33808 -35.25002 -33.55504 -32.25813 -31.38694 -27.72244 -26.75342 -26.64385 -26.03725 -24.42669 -23.57455 -22.66088 -21.46240 -20.94350 -19.46023 -18.98244 -18.55396 -18.27459 -17.80448 -17.27552 -17.02880 -16.84289 -16.06742 -16.00095 -15.77097 -15.37448 -15.19824 -14.99686 -14.87232 -14.58268 -14.43723 -14.29523 -13.93642 -13.63144 -13.59101 -13.48033 -13.36397 -13.07210 -12.95249 -12.83446 -12.82097 -12.34133 -12.27295 -12.10585 -12.05982 -11.91289 -11.88993 -11.80862 -11.68789 -11.35777 -11.05324 -10.86903 -10.80681 -10.56175 -9.97422 -8.96910 -7.94629 -5.22687 1.46884 1.48625 1.56956 1.57704 2.16299 2.56402 2.97326 3.36648 3.39137 3.48260 3.51566 3.54196 3.55433 3.68998 3.82347 3.88599 3.97587 4.02598 4.19501 4.27852 4.29039 4.35693 4.48186 4.53004 4.61859 4.63018 4.66364 4.81517 4.83895 4.88131 4.93205 4.94321 5.00763 5.06516 5.10131 5.14512 5.19411 5.28001 5.29427 5.40853 5.44913 5.57146 5.66028 5.71632 6.27950 6.62379 7.30497 7.33434 8.11560 8.34248 9.28727 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.032229 B = 0.001843 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.576472 B =15191.556366 C =15609.341286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C -0.097 4.097 4 H 0.136 0.864 5 C -0.159 4.159 6 C 0.262 3.738 7 F -0.220 7.220 8 F -0.212 7.212 9 C 0.518 3.482 10 O -0.583 6.583 11 N -0.704 5.704 12 C 0.129 3.871 13 C -0.118 4.118 14 C -0.091 4.091 15 C -0.136 4.136 16 C 0.146 3.854 17 N -0.729 5.729 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.973 3.027 23 H -0.289 1.289 24 H -0.296 1.296 25 H -0.268 1.268 26 C -0.125 4.125 27 C -0.116 4.116 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.030 0.970 31 H 0.108 0.892 32 H 0.047 0.953 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.158 0.842 36 H 0.419 0.581 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.373 0.627 44 H 0.250 0.750 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.774 -19.037 -22.144 32.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C -0.118 4.118 4 H 0.154 0.846 5 C -0.198 4.198 6 C 0.209 3.791 7 F -0.202 7.202 8 F -0.193 7.193 9 C 0.306 3.694 10 O -0.462 6.462 11 N -0.355 5.355 12 C 0.023 3.977 13 C -0.156 4.156 14 C -0.092 4.092 15 C -0.177 4.177 16 C 0.036 3.964 17 N -0.367 5.367 18 C -0.374 4.374 19 H 0.093 0.907 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.802 3.198 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.193 1.193 26 C -0.164 4.164 27 C -0.154 4.154 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.126 0.874 32 H 0.066 0.934 33 H 0.137 0.863 34 H 0.092 0.908 35 H 0.175 0.825 36 H 0.257 0.743 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.205 0.795 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.531 -19.491 -21.427 31.970 hybrid contribution -0.570 0.879 0.839 1.342 sum 12.961 -18.611 -20.588 30.631 Atomic orbital electron populations 1.21792 0.95626 1.02329 1.01314 1.21893 0.96333 0.94333 1.04100 1.21354 0.95386 0.98268 0.96784 0.84569 1.22572 0.94934 1.05122 0.97137 1.22320 0.76161 0.79198 1.01419 1.92978 1.33783 1.96039 1.97366 1.92870 1.90326 1.38444 1.97694 1.20994 0.75744 0.82109 0.90588 1.90707 1.54644 1.66128 1.34766 1.45964 1.64581 1.09779 1.15174 1.22302 0.93577 0.92721 0.89059 1.23163 0.96429 0.94559 1.01491 1.21901 0.96729 0.95362 0.95235 1.23377 0.98562 0.96582 0.99154 1.21928 0.95048 0.87808 0.91594 1.42613 1.05944 1.29492 1.58652 1.19702 0.86989 1.06762 1.23967 0.90651 1.25581 1.01182 0.99332 1.01008 1.69815 1.31544 1.22310 1.38460 0.85145 0.79833 0.76824 0.78005 1.21597 1.22213 1.19322 1.23087 0.98276 0.99788 0.95216 1.23144 0.95769 0.93771 1.02755 0.90827 0.92232 0.95107 0.87393 0.93368 0.86333 0.90766 0.82475 0.74350 0.89179 0.87763 0.92196 0.91531 0.91735 0.91359 0.79511 0.94073 0.91902 0.90833 0.90973 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.60 71.98 0.69 -1.46 16 2 C -0.13 -1.71 4.71 30.59 0.14 -1.57 16 3 C -0.10 -0.91 2.21 -11.54 -0.03 -0.93 16 4 H 0.14 0.19 8.13 -2.38 -0.02 0.17 16 5 C -0.16 -1.29 5.00 30.59 0.15 -1.14 16 6 C 0.26 1.77 5.25 71.98 0.38 2.15 16 7 F -0.22 -2.75 17.34 44.97 0.78 -1.97 16 8 F -0.21 -2.49 14.11 44.97 0.63 -1.85 16 9 C 0.52 8.98 5.91 87.66 0.52 9.50 16 10 O -0.58 -16.38 15.44 -3.02 -0.05 -16.43 16 11 N -0.70 -9.47 5.35 -439.51 -2.35 -11.82 16 12 C 0.13 2.50 4.27 45.63 0.20 2.69 16 13 C -0.12 -2.48 7.64 30.89 0.24 -2.25 16 14 C -0.09 -2.29 1.11 -52.31 -0.06 -2.35 16 15 C -0.14 -4.32 7.64 30.88 0.24 -4.08 16 16 C 0.15 5.70 4.48 45.63 0.20 5.91 16 17 N -0.73 -37.09 5.40 -319.92 -1.73 -38.82 16 18 C -0.24 -13.55 9.97 84.03 0.84 -12.71 16 19 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 20 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 21 N -0.97 -59.79 13.06 21.65 0.28 -59.51 16 22 Si 0.97 46.31 29.55 68.60 2.03 48.33 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 26 C -0.12 -4.04 7.59 30.88 0.23 -3.81 16 27 C -0.12 -2.18 7.59 30.89 0.23 -1.95 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.03 0.60 7.21 -2.39 -0.02 0.58 16 31 H 0.11 1.13 5.24 -2.38 -0.01 1.12 16 32 H 0.05 0.92 7.76 -2.39 -0.02 0.90 16 33 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.16 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.42 2.46 8.72 -92.71 -0.81 1.65 16 37 H 0.09 2.27 7.41 -2.39 -0.02 2.25 16 38 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 40 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 2.71 8.10 -2.39 -0.02 2.70 16 43 H 0.37 20.37 7.92 -92.71 -0.73 19.64 16 44 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.07 2.50 8.12 -2.38 -0.02 2.48 16 47 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.11 1.54 8.12 -2.38 -0.02 1.52 16 Total: -1.00 -74.65 392.48 3.47 -71.18 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.57 Total: 27.00 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 4.45 Total: -16.11 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -3.80 Total: -110.15 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.05 Total: -16.43 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 1.41 Total: -3.83 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -74.65 3.47 -71.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121234017.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.233 kcal (2) G-P(sol) polarization free energy of solvation -74.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds