Wall clock time and date at job start Tue Mar 31 2020 15:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46892 * 2 1 4 4 H 1.09006 * 109.46536 * 185.45551 * 3 2 1 5 5 C 1.53000 * 109.47338 * 305.45795 * 3 2 1 6 6 C 1.53005 * 109.46942 * 293.33786 * 5 3 2 7 7 F 1.39898 * 109.47562 * 66.59140 * 6 5 3 8 8 F 1.39900 * 109.47056 * 186.59611 * 6 5 3 9 9 C 1.50698 * 109.46790 * 65.46017 * 3 2 1 10 10 O 1.21281 * 119.99747 * 239.99095 * 9 3 2 11 11 N 1.34779 * 120.00407 * 60.00284 * 9 3 2 12 12 C 1.46500 * 120.00155 * 180.02562 * 11 9 3 13 13 C 1.53946 * 113.57648 * 252.71806 * 12 11 9 14 14 C 1.52911 * 86.78045 * 220.66222 * 13 12 11 15 15 C 1.52914 * 121.13545 * 150.61611 * 14 13 12 16 16 C 1.53947 * 86.77942 * 100.82125 * 15 14 13 17 17 N 1.46504 * 113.57944 * 139.33645 * 16 15 14 18 18 C 1.36937 * 120.00403 * 107.27218 * 17 16 15 19 19 H 1.08002 * 119.99637 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00122 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00185 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00445 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46991 * 89.99563 * 22 20 18 24 24 H 1.48491 * 109.47297 * 209.99990 * 22 20 18 25 25 H 1.48500 * 109.46901 * 330.00117 * 22 20 18 26 26 C 1.52909 * 121.13716 * 259.17660 * 14 13 12 27 27 C 1.52904 * 88.04045 * 24.89751 * 14 13 12 28 28 H 1.09001 * 109.46829 * 306.46111 * 1 2 3 29 29 H 1.09007 * 109.46955 * 186.46672 * 1 2 3 30 30 H 1.08992 * 109.47313 * 66.46423 * 1 2 3 31 31 H 1.09004 * 109.47200 * 120.00087 * 2 1 3 32 32 H 1.09000 * 109.46763 * 240.00207 * 2 1 3 33 33 H 1.08993 * 109.47151 * 53.33318 * 5 3 2 34 34 H 1.08992 * 109.46996 * 173.33768 * 5 3 2 35 35 H 1.08999 * 109.46853 * 306.59330 * 6 5 3 36 36 H 0.96998 * 119.99923 * 359.97438 * 11 9 3 37 37 H 1.09000 * 112.82345 * 23.90497 * 12 11 9 38 38 H 1.09004 * 113.66290 * 335.13024 * 13 12 11 39 39 H 1.08995 * 113.66875 * 106.18889 * 13 12 11 40 40 H 1.09004 * 113.65921 * 215.29302 * 15 14 13 41 41 H 1.08996 * 113.66406 * 346.34645 * 15 14 13 42 42 H 1.09001 * 113.58270 * 270.12058 * 16 15 14 43 43 H 0.97001 * 119.99527 * 287.28030 * 17 16 15 44 44 H 0.96999 * 120.00541 * 180.02562 * 21 20 18 45 45 H 1.09003 * 113.65820 * 13.65246 * 26 14 13 46 46 H 1.08999 * 113.66368 * 144.61071 * 26 14 13 47 47 H 1.09001 * 113.66181 * 220.62661 * 27 14 13 48 48 H 1.09001 * 113.66301 * 89.57902 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1256 1.4440 -0.0977 5 6 1.4210 2.2023 -1.1750 6 6 1.9481 1.6248 -2.4901 7 9 1.4773 0.3168 -2.6471 8 9 1.5021 2.4122 -3.5571 9 6 1.6509 2.1127 1.2925 10 8 0.9480 3.1009 1.2755 11 7 2.0844 1.6142 2.4673 12 6 1.7058 2.2655 3.7237 13 6 2.8612 3.0321 4.3925 14 6 2.3449 2.4789 5.7212 15 6 3.2930 2.2246 6.8936 16 6 2.7829 3.5529 7.4813 17 7 2.5669 3.5084 8.9297 18 6 3.4296 4.1589 9.7710 19 1 4.2691 4.7051 9.3668 20 6 3.2246 4.1171 11.1432 21 7 4.0535 4.7427 11.9519 22 14 1.7723 3.1729 11.8424 23 1 2.1770 1.7695 12.1104 24 1 1.3302 3.8110 13.1082 25 1 0.6552 3.1876 10.8641 26 6 1.4984 3.3389 6.6603 27 6 1.7270 1.3199 4.9383 28 1 -0.3633 0.6107 0.8265 29 1 -0.3633 -1.0212 0.1157 30 1 -0.3633 0.4103 -0.9421 31 1 1.8933 -0.5139 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 0.3363 2.1006 -1.1424 34 1 1.6893 3.2566 -1.1076 35 1 3.0379 1.6192 -2.4735 36 1 2.6465 0.8238 2.4809 37 1 0.7871 2.8459 3.6390 38 1 3.8488 2.6612 4.1184 39 1 2.7751 4.1153 4.3066 40 1 3.0271 1.3517 7.4898 41 1 4.3469 2.2449 6.6163 42 1 3.3627 4.4205 7.1660 43 1 1.8128 3.0180 9.2926 44 1 3.9105 4.7132 12.9108 45 1 1.1188 4.2494 6.1965 46 1 0.7271 2.7795 7.1897 47 1 0.7348 1.0351 5.2885 48 1 2.3958 0.4676 4.8177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121234019.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:53 Heat of formation + Delta-G solvation = -99.064943 kcal Electronic energy + Delta-G solvation = -28330.273961 eV Core-core repulsion = 24057.009976 eV Total energy + Delta-G solvation = -4273.263985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.42241 -47.42345 -40.86046 -39.74444 -36.41785 -35.84934 -33.77301 -32.22740 -31.15424 -30.17740 -27.46464 -25.88515 -25.38245 -24.23627 -23.90895 -22.95139 -21.55489 -20.33644 -19.92747 -18.28542 -18.04421 -17.84854 -17.28979 -17.09415 -16.42814 -16.27198 -15.91994 -15.35229 -15.08690 -14.90486 -14.36700 -14.18509 -14.12540 -13.90258 -13.63596 -13.43163 -13.39445 -12.89302 -12.69838 -12.68542 -12.51456 -12.45531 -12.33325 -11.85906 -11.74613 -11.67377 -11.42946 -11.35965 -11.16524 -11.14854 -11.08674 -10.77586 -10.29482 -10.22083 -9.95879 -9.89754 -9.69036 -9.47016 -9.18412 -8.89688 -7.27033 -5.78944 -3.14278 2.31930 2.77367 3.35850 3.38627 3.43589 3.43876 3.77332 3.87304 4.08209 4.35834 4.41113 4.45388 4.47589 4.54532 4.57173 4.65617 4.75066 4.82012 4.89590 5.05245 5.19021 5.23047 5.35679 5.38767 5.43846 5.46560 5.57422 5.58827 5.62433 5.67917 5.74090 5.79178 5.82744 5.89087 5.97031 6.04819 6.09379 6.21138 6.28449 6.40066 6.53043 6.76911 6.98223 7.23313 7.93354 7.97983 8.40955 9.18918 9.91654 10.11757 11.39347 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.037565 B = 0.001871 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.199004 B =14960.749237 C =15237.610322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.128 4.128 3 C -0.109 4.109 4 H 0.103 0.897 5 C -0.158 4.158 6 C 0.263 3.737 7 F -0.202 7.202 8 F -0.205 7.205 9 C 0.522 3.478 10 O -0.538 6.538 11 N -0.716 5.716 12 C 0.123 3.877 13 C -0.124 4.124 14 C -0.102 4.102 15 C -0.148 4.148 16 C 0.174 3.826 17 N -0.738 5.738 18 C -0.246 4.246 19 H 0.091 0.909 20 C 0.003 3.997 21 N -0.933 5.933 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.132 4.132 27 C -0.130 4.130 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.400 0.600 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.362 0.638 44 H 0.259 0.741 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 -11.692 -29.803 32.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.165 4.165 3 C -0.131 4.131 4 H 0.121 0.879 5 C -0.196 4.196 6 C 0.209 3.791 7 F -0.183 7.183 8 F -0.187 7.187 9 C 0.308 3.692 10 O -0.415 6.415 11 N -0.366 5.366 12 C 0.018 3.982 13 C -0.162 4.162 14 C -0.103 4.103 15 C -0.189 4.189 16 C 0.063 3.937 17 N -0.378 5.378 18 C -0.376 4.376 19 H 0.108 0.892 20 C -0.192 4.192 21 N -0.581 5.581 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.171 4.171 27 C -0.168 4.168 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.234 0.766 37 H 0.131 0.869 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.195 0.805 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.195 -10.813 -29.696 31.881 hybrid contribution -0.721 -1.131 0.608 1.473 sum -4.916 -11.944 -29.088 31.827 Atomic orbital electron populations 1.21849 0.95046 1.02122 1.02294 1.21776 0.97346 0.93493 1.03917 1.21323 1.02197 0.96788 0.92749 0.87893 1.22559 1.04281 1.02034 0.90738 1.21942 0.98358 0.73707 0.85104 1.92941 1.90949 1.38380 1.96034 1.93000 1.91756 1.74606 1.59295 1.20345 0.79679 0.84036 0.85185 1.90729 1.37380 1.25946 1.87411 1.46043 1.52918 1.31843 1.05827 1.22641 0.99254 0.95490 0.80780 1.23139 0.98147 1.00686 0.94256 1.22066 0.99039 0.96433 0.92800 1.23606 0.97853 1.01849 0.95597 1.21521 0.93640 0.95177 0.83339 1.42771 1.31730 1.62106 1.01145 1.19143 1.05634 1.25100 0.87759 0.89159 1.24700 0.98402 1.00211 0.95921 1.69703 1.38304 1.47184 1.02910 0.86543 0.83337 0.80011 0.78610 1.21095 1.21722 1.20315 1.23236 0.98312 0.98618 0.96940 1.23174 1.01554 0.97205 0.94898 0.92653 0.92241 0.92084 0.91231 0.89240 0.88150 0.87727 0.87242 0.76568 0.86853 0.89732 0.90832 0.90393 0.92248 0.89961 0.80509 0.93053 0.91722 0.90260 0.90924 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 8.98 37.16 0.33 -0.70 16 2 C -0.13 -0.64 5.05 -26.73 -0.13 -0.78 16 3 C -0.11 -0.62 2.49 -91.77 -0.23 -0.85 16 4 H 0.10 0.34 8.13 -51.93 -0.42 -0.08 16 5 C -0.16 -1.01 4.08 -26.73 -0.11 -1.12 16 6 C 0.26 1.43 5.24 37.16 0.19 1.63 16 7 F -0.20 -1.36 13.77 2.25 0.03 -1.32 16 8 F -0.21 -1.65 17.34 2.25 0.04 -1.61 16 9 C 0.52 4.75 6.06 -10.99 -0.07 4.68 16 10 O -0.54 -7.15 15.49 5.56 0.09 -7.07 16 11 N -0.72 -5.68 5.21 -52.86 -0.28 -5.95 16 12 C 0.12 1.24 4.24 -66.96 -0.28 0.96 16 13 C -0.12 -1.37 7.64 -26.28 -0.20 -1.58 16 14 C -0.10 -1.29 1.11 -154.71 -0.17 -1.46 16 15 C -0.15 -2.31 7.64 -26.28 -0.20 -2.51 16 16 C 0.17 3.24 4.48 -66.95 -0.30 2.94 16 17 N -0.74 -17.22 5.20 -52.48 -0.27 -17.50 16 18 C -0.25 -6.90 10.45 -15.06 -0.16 -7.06 16 19 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 20 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 21 N -0.93 -29.22 13.97 55.49 0.78 -28.45 16 22 Si 0.88 21.99 27.74 -169.99 -4.71 17.27 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 26 C -0.13 -1.99 7.59 -26.28 -0.20 -2.19 16 27 C -0.13 -1.31 7.59 -26.29 -0.20 -1.51 16 28 H 0.05 0.46 7.20 -51.93 -0.37 0.08 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.43 6.02 -51.93 -0.31 0.12 16 31 H 0.07 0.28 7.41 -51.93 -0.39 -0.10 16 32 H 0.09 0.41 5.91 -51.93 -0.31 0.10 16 33 H 0.10 0.78 6.11 -51.93 -0.32 0.46 16 34 H 0.10 0.73 7.89 -51.93 -0.41 0.32 16 35 H 0.11 0.26 8.13 -51.93 -0.42 -0.16 16 36 H 0.40 2.13 8.08 -40.82 -0.33 1.80 16 37 H 0.11 1.37 7.47 -51.93 -0.39 0.99 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 43 H 0.36 8.30 5.79 -40.82 -0.24 8.06 16 44 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 LS Contribution 383.43 15.07 5.78 5.78 Total: -1.00 -33.44 383.43 -8.09 -41.53 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.72 Total: 6.85 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -1.82 Total: -9.53 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: 0.23 Total: -51.90 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: 0.09 Total: -7.07 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.07 Total: -2.93 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.44 -8.09 -41.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121234019.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.534 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds