Wall clock time and date at job start Tue Mar 31 2020 15:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46892 * 2 1 4 4 H 1.09006 * 109.46536 * 185.45551 * 3 2 1 5 5 C 1.53000 * 109.47338 * 305.45795 * 3 2 1 6 6 C 1.53005 * 109.46942 * 293.33786 * 5 3 2 7 7 F 1.39898 * 109.47562 * 66.59140 * 6 5 3 8 8 F 1.39900 * 109.47056 * 186.59611 * 6 5 3 9 9 C 1.50698 * 109.46790 * 65.46017 * 3 2 1 10 10 O 1.21281 * 119.99747 * 239.99095 * 9 3 2 11 11 N 1.34779 * 120.00407 * 60.00284 * 9 3 2 12 12 C 1.46500 * 120.00155 * 180.02562 * 11 9 3 13 13 C 1.53946 * 113.57648 * 252.71806 * 12 11 9 14 14 C 1.52911 * 86.78045 * 220.66222 * 13 12 11 15 15 C 1.52914 * 121.13545 * 150.61611 * 14 13 12 16 16 C 1.53947 * 86.77942 * 100.82125 * 15 14 13 17 17 N 1.46504 * 113.57944 * 139.33645 * 16 15 14 18 18 C 1.36937 * 120.00403 * 107.27218 * 17 16 15 19 19 H 1.08002 * 119.99637 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00122 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00185 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00445 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46991 * 89.99563 * 22 20 18 24 24 H 1.48491 * 109.47297 * 209.99990 * 22 20 18 25 25 H 1.48500 * 109.46901 * 330.00117 * 22 20 18 26 26 C 1.52909 * 121.13716 * 259.17660 * 14 13 12 27 27 C 1.52904 * 88.04045 * 24.89751 * 14 13 12 28 28 H 1.09001 * 109.46829 * 306.46111 * 1 2 3 29 29 H 1.09007 * 109.46955 * 186.46672 * 1 2 3 30 30 H 1.08992 * 109.47313 * 66.46423 * 1 2 3 31 31 H 1.09004 * 109.47200 * 120.00087 * 2 1 3 32 32 H 1.09000 * 109.46763 * 240.00207 * 2 1 3 33 33 H 1.08993 * 109.47151 * 53.33318 * 5 3 2 34 34 H 1.08992 * 109.46996 * 173.33768 * 5 3 2 35 35 H 1.08999 * 109.46853 * 306.59330 * 6 5 3 36 36 H 0.96998 * 119.99923 * 359.97438 * 11 9 3 37 37 H 1.09000 * 112.82345 * 23.90497 * 12 11 9 38 38 H 1.09004 * 113.66290 * 335.13024 * 13 12 11 39 39 H 1.08995 * 113.66875 * 106.18889 * 13 12 11 40 40 H 1.09004 * 113.65921 * 215.29302 * 15 14 13 41 41 H 1.08996 * 113.66406 * 346.34645 * 15 14 13 42 42 H 1.09001 * 113.58270 * 270.12058 * 16 15 14 43 43 H 0.97001 * 119.99527 * 287.28030 * 17 16 15 44 44 H 0.96999 * 120.00541 * 180.02562 * 21 20 18 45 45 H 1.09003 * 113.65820 * 13.65246 * 26 14 13 46 46 H 1.08999 * 113.66368 * 144.61071 * 26 14 13 47 47 H 1.09001 * 113.66181 * 220.62661 * 27 14 13 48 48 H 1.09001 * 113.66301 * 89.57902 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1256 1.4440 -0.0977 5 6 1.4210 2.2023 -1.1750 6 6 1.9481 1.6248 -2.4901 7 9 1.4773 0.3168 -2.6471 8 9 1.5021 2.4122 -3.5571 9 6 1.6509 2.1127 1.2925 10 8 0.9480 3.1009 1.2755 11 7 2.0844 1.6142 2.4673 12 6 1.7058 2.2655 3.7237 13 6 2.8612 3.0321 4.3925 14 6 2.3449 2.4789 5.7212 15 6 3.2930 2.2246 6.8936 16 6 2.7829 3.5529 7.4813 17 7 2.5669 3.5084 8.9297 18 6 3.4296 4.1589 9.7710 19 1 4.2691 4.7051 9.3668 20 6 3.2246 4.1171 11.1432 21 7 4.0535 4.7427 11.9519 22 14 1.7723 3.1729 11.8424 23 1 2.1770 1.7695 12.1104 24 1 1.3302 3.8110 13.1082 25 1 0.6552 3.1876 10.8641 26 6 1.4984 3.3389 6.6603 27 6 1.7270 1.3199 4.9383 28 1 -0.3633 0.6107 0.8265 29 1 -0.3633 -1.0212 0.1157 30 1 -0.3633 0.4103 -0.9421 31 1 1.8933 -0.5139 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 0.3363 2.1006 -1.1424 34 1 1.6893 3.2566 -1.1076 35 1 3.0379 1.6192 -2.4735 36 1 2.6465 0.8238 2.4809 37 1 0.7871 2.8459 3.6390 38 1 3.8488 2.6612 4.1184 39 1 2.7751 4.1153 4.3066 40 1 3.0271 1.3517 7.4898 41 1 4.3469 2.2449 6.6163 42 1 3.3627 4.4205 7.1660 43 1 1.8128 3.0180 9.2926 44 1 3.9105 4.7132 12.9108 45 1 1.1188 4.2494 6.1965 46 1 0.7271 2.7795 7.1897 47 1 0.7348 1.0351 5.2885 48 1 2.3958 0.4676 4.8177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121234019.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:52 Heat of formation + Delta-G solvation = -120.583372 kcal Electronic energy + Delta-G solvation = -28331.207070 eV Core-core repulsion = 24057.009976 eV Total energy + Delta-G solvation = -4274.197094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.90034 -47.92090 -41.76360 -40.63903 -37.47377 -36.63115 -35.28473 -33.64399 -32.00670 -31.59363 -28.03276 -26.75751 -26.65512 -25.88762 -24.35479 -24.05410 -22.50128 -21.55571 -20.68303 -19.77362 -18.77038 -18.61035 -18.36303 -17.70054 -17.17625 -16.97541 -16.81659 -16.44997 -16.16996 -15.81824 -15.65756 -15.33677 -14.84375 -14.68225 -14.65443 -14.53129 -13.99569 -13.91440 -13.72835 -13.61663 -13.58361 -13.39092 -13.32474 -12.99141 -12.96376 -12.89076 -12.39106 -12.23740 -12.20147 -12.01690 -11.86862 -11.86176 -11.81509 -11.59511 -11.43476 -11.06013 -10.89148 -10.84313 -10.59246 -9.96517 -9.26293 -8.02585 -5.35284 1.37326 1.40985 1.48371 1.63731 2.14442 2.48290 2.99258 3.27312 3.39503 3.42041 3.46044 3.50728 3.62217 3.68872 3.79966 3.87359 3.90003 3.99032 4.08857 4.10410 4.28975 4.33281 4.42439 4.52808 4.58935 4.61402 4.72075 4.80803 4.83037 4.93936 4.94225 4.96793 4.97736 5.05981 5.09262 5.13874 5.15646 5.23621 5.29201 5.40632 5.48213 5.63114 5.64893 5.78459 6.23000 6.60879 7.08016 7.29605 7.85846 8.05046 9.19050 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.037565 B = 0.001871 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.199004 B =14960.749237 C =15237.610322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.100 4.100 4 H 0.140 0.860 5 C -0.157 4.157 6 C 0.262 3.738 7 F -0.208 7.208 8 F -0.223 7.223 9 C 0.519 3.481 10 O -0.586 6.586 11 N -0.703 5.703 12 C 0.130 3.870 13 C -0.122 4.122 14 C -0.092 4.092 15 C -0.138 4.138 16 C 0.148 3.852 17 N -0.743 5.743 18 C -0.232 4.232 19 H 0.055 0.945 20 C -0.068 4.068 21 N -0.985 5.985 22 Si 0.958 3.042 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.252 1.252 26 C -0.124 4.124 27 C -0.114 4.114 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.152 0.848 36 H 0.417 0.583 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.366 0.634 44 H 0.257 0.743 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.059 -14.574 -31.692 35.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.161 4.161 3 C -0.121 4.121 4 H 0.157 0.843 5 C -0.196 4.196 6 C 0.209 3.791 7 F -0.190 7.190 8 F -0.204 7.204 9 C 0.306 3.694 10 O -0.466 6.466 11 N -0.354 5.354 12 C 0.024 3.976 13 C -0.160 4.160 14 C -0.093 4.093 15 C -0.178 4.178 16 C 0.039 3.961 17 N -0.385 5.385 18 C -0.364 4.364 19 H 0.073 0.927 20 C -0.260 4.260 21 N -0.636 5.636 22 Si 0.785 3.215 23 H -0.202 1.202 24 H -0.224 1.224 25 H -0.177 1.177 26 C -0.163 4.163 27 C -0.152 4.152 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.169 0.831 36 H 0.255 0.745 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.200 0.800 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.102 0.898 47 H 0.095 0.905 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.408 -13.748 -31.660 34.797 hybrid contribution -0.604 -0.152 1.111 1.274 sum -5.012 -13.900 -30.550 33.935 Atomic orbital electron populations 1.21843 0.96677 1.01917 1.00925 1.21796 0.95807 0.93083 1.05369 1.21349 1.04200 0.96441 0.90152 0.84279 1.22500 1.03208 1.01869 0.91976 1.22261 1.00254 0.72861 0.83737 1.92925 1.91270 1.38795 1.95988 1.92965 1.92150 1.75183 1.60123 1.20960 0.78652 0.83385 0.86364 1.90718 1.39546 1.28278 1.88095 1.45882 1.52706 1.32056 1.04800 1.22316 0.97912 0.95382 0.81967 1.23183 0.99401 1.00108 0.93342 1.21902 0.97481 0.97578 0.92355 1.23404 0.98668 0.99314 0.96415 1.21905 0.96432 0.96502 0.81259 1.42766 1.31142 1.61958 1.02592 1.19108 1.04944 1.23795 0.88503 0.92700 1.25554 1.01916 1.02125 0.96359 1.69892 1.40901 1.49737 1.03049 0.85368 0.80116 0.78367 0.77680 1.20239 1.22424 1.17682 1.23123 0.96945 0.99475 0.96741 1.23132 1.02066 0.96785 0.93246 0.94716 0.91602 0.93031 0.89434 0.88039 0.90274 0.88642 0.83121 0.74529 0.89007 0.88048 0.92234 0.90525 0.92011 0.91669 0.80028 0.93401 0.91545 0.89781 0.90491 0.87267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 8.98 71.98 0.65 -1.22 16 2 C -0.12 -0.85 5.05 30.59 0.15 -0.69 16 3 C -0.10 -0.85 2.49 -11.54 -0.03 -0.88 16 4 H 0.14 0.24 8.13 -2.38 -0.02 0.22 16 5 C -0.16 -1.80 4.08 30.60 0.12 -1.68 16 6 C 0.26 2.28 5.24 71.98 0.38 2.65 16 7 F -0.21 -2.33 13.77 44.97 0.62 -1.71 16 8 F -0.22 -3.34 17.34 44.97 0.78 -2.56 16 9 C 0.52 8.45 6.06 87.66 0.53 8.98 16 10 O -0.59 -15.46 15.49 -3.03 -0.05 -15.50 16 11 N -0.70 -9.02 5.21 -439.54 -2.29 -11.31 16 12 C 0.13 2.32 4.24 45.62 0.19 2.51 16 13 C -0.12 -2.45 7.64 30.88 0.24 -2.21 16 14 C -0.09 -2.11 1.11 -52.31 -0.06 -2.16 16 15 C -0.14 -4.05 7.64 30.89 0.24 -3.81 16 16 C 0.15 5.46 4.48 45.62 0.20 5.66 16 17 N -0.74 -34.53 5.20 -319.93 -1.67 -36.19 16 18 C -0.23 -13.33 10.45 84.03 0.88 -12.45 16 19 H 0.05 3.46 8.06 -2.91 -0.02 3.43 16 20 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 21 N -0.99 -63.62 13.97 21.65 0.30 -63.32 16 22 Si 0.96 45.56 27.74 68.60 1.90 47.46 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.25 -10.82 6.52 99.48 0.65 -10.17 16 26 C -0.12 -3.57 7.59 30.88 0.23 -3.34 16 27 C -0.11 -1.88 7.59 30.88 0.23 -1.65 16 28 H 0.03 0.55 7.20 -2.39 -0.02 0.53 16 29 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.05 0.70 6.02 -2.39 -0.01 0.69 16 31 H 0.09 0.32 7.41 -2.39 -0.02 0.31 16 32 H 0.10 0.54 5.91 -2.39 -0.01 0.53 16 33 H 0.08 1.24 6.11 -2.39 -0.01 1.23 16 34 H 0.10 1.28 7.89 -2.39 -0.02 1.26 16 35 H 0.15 0.12 8.13 -2.39 -0.02 0.10 16 36 H 0.42 2.56 8.08 -92.71 -0.75 1.81 16 37 H 0.09 2.13 7.47 -2.39 -0.02 2.11 16 38 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 2.30 8.14 -2.38 -0.02 2.29 16 41 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 42 H 0.07 2.59 8.10 -2.39 -0.02 2.57 16 43 H 0.37 16.23 5.79 -92.71 -0.54 15.69 16 44 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 45 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.08 2.36 8.12 -2.39 -0.02 2.34 16 47 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.11 1.33 8.12 -2.39 -0.02 1.31 16 Total: -1.00 -76.48 383.43 3.67 -72.82 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -0.36 Total: 24.20 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 4.43 Total: -13.88 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -3.65 Total: -110.82 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.05 Total: -15.50 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 1.40 Total: -4.27 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.46 kcal Total: -76.48 3.67 -72.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121234019.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.766 kcal (2) G-P(sol) polarization free energy of solvation -76.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds