Wall clock time and date at job start Tue Mar 31 2020 16:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58552 * 2 1 4 4 C 1.53192 * 109.58854 * 239.71101 * 2 1 3 5 5 C 1.53035 * 109.31190 * 185.57658 * 4 2 1 6 6 C 1.53043 * 109.53740 * 61.36820 * 5 4 2 7 7 H 1.09005 * 109.49544 * 178.65073 * 6 5 4 8 8 N 1.46491 * 109.49854 * 58.58554 * 6 5 4 9 9 C 1.34781 * 120.00175 * 155.00046 * 8 6 5 10 10 O 1.21274 * 119.99700 * 359.97438 * 9 8 6 11 11 C 1.50696 * 119.99784 * 179.97438 * 9 8 6 12 12 C 1.53001 * 110.01922 * 58.61254 * 11 9 8 13 13 F 1.39898 * 109.47356 * 61.38764 * 12 11 9 14 14 F 1.39898 * 109.47245 * 181.39068 * 12 11 9 15 15 C 1.54268 * 110.07606 * 297.19065 * 11 9 8 16 16 C 1.54897 * 104.19416 * 264.30726 * 15 11 9 17 17 C 1.54891 * 102.74616 * 322.05547 * 16 15 11 18 18 C 1.53881 * 110.03046 * 180.02562 * 11 9 8 19 19 C 1.53191 * 109.31183 * 298.63176 * 6 5 4 20 20 N 1.46924 * 108.77402 * 54.63541 * 19 6 5 21 21 C 1.36938 * 120.63000 * 126.37106 * 20 19 6 22 22 H 1.08001 * 119.99739 * 221.15592 * 21 20 19 23 23 C 1.38817 * 120.00108 * 41.14836 * 21 20 19 24 24 N 1.31616 * 119.99980 * 214.88421 * 23 21 20 25 25 Si 1.86799 * 119.99702 * 34.88702 * 23 21 20 26 26 H 1.48503 * 109.47316 * 84.62717 * 25 23 21 27 27 H 1.48504 * 109.46977 * 204.62526 * 25 23 21 28 28 H 1.48499 * 109.47242 * 324.62214 * 25 23 21 29 29 H 1.09003 * 109.46805 * 180.28740 * 1 2 3 30 30 H 1.09002 * 109.47295 * 300.28658 * 1 2 3 31 31 H 1.08996 * 109.47074 * 60.28459 * 1 2 3 32 32 H 1.09004 * 109.49502 * 65.63070 * 4 2 1 33 33 H 1.08992 * 109.49789 * 305.53099 * 4 2 1 34 34 H 1.08998 * 109.46416 * 301.34968 * 5 4 2 35 35 H 1.08997 * 109.45170 * 181.37901 * 5 4 2 36 36 H 0.96998 * 120.00093 * 334.99916 * 8 6 5 37 37 H 1.08998 * 109.46703 * 301.38561 * 12 11 9 38 38 H 1.08999 * 110.48598 * 145.63063 * 15 11 9 39 39 H 1.08997 * 110.48089 * 22.98211 * 15 11 9 40 40 H 1.08998 * 110.75418 * 203.74248 * 16 15 11 41 41 H 1.08989 * 110.75530 * 80.36839 * 16 15 11 42 42 H 1.09004 * 110.48576 * 156.62478 * 17 16 15 43 43 H 1.08998 * 110.48681 * 279.26501 * 17 16 15 44 44 H 1.09001 * 110.03081 * 0.04375 * 18 11 9 45 45 H 1.09003 * 110.07039 * 238.64392 * 18 11 9 46 46 H 1.09004 * 109.58792 * 174.42235 * 19 6 5 47 47 H 1.08998 * 109.59056 * 294.84729 * 19 6 5 48 48 H 0.96996 * 120.00102 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2462 5 6 3.5675 -0.8465 -1.1711 6 6 3.9569 -1.6658 0.0616 7 1 5.0412 -1.7701 0.1014 8 7 3.3406 -2.9923 -0.0182 9 6 3.8971 -4.0342 0.6309 10 8 4.9084 -3.8735 1.2807 11 6 3.2627 -5.3987 0.5492 12 6 3.1807 -5.8516 -0.9100 13 9 4.4707 -5.9402 -1.4440 14 9 2.5618 -7.1045 -0.9753 15 6 1.8519 -5.3649 1.1721 16 6 2.0673 -5.8507 2.6271 17 6 3.1396 -6.9563 2.4629 18 6 4.0812 -6.4105 1.3704 19 6 3.4650 -0.9485 1.3227 20 7 2.0225 -0.7009 1.1937 21 6 1.1536 -1.1160 2.1672 22 1 0.2054 -1.5546 1.8934 23 6 1.4915 -0.9732 3.5060 24 7 1.1103 -1.8792 4.3813 25 14 2.4873 0.5050 4.0653 26 1 1.5759 1.6512 4.3120 27 1 3.2106 0.1693 5.3181 28 1 3.4670 0.8696 3.0107 29 1 -0.3633 -1.0277 0.0052 30 1 -0.3634 0.5183 0.8874 31 1 -0.3633 0.5094 -0.8925 32 1 1.7661 -0.1642 -2.1370 33 1 1.6031 -1.7237 -1.2933 34 1 4.0061 0.1487 -1.0990 35 1 3.9377 -1.3424 -2.0683 36 1 2.5320 -3.1209 -0.5383 37 1 2.5993 -5.1289 -1.4825 38 1 1.1833 -6.0410 0.6393 39 1 1.4555 -4.3496 1.1638 40 1 1.1458 -6.2642 3.0367 41 1 2.4405 -5.0407 3.2535 42 1 3.6829 -7.1025 3.3965 43 1 2.6790 -7.8894 2.1384 44 1 4.9367 -5.9143 1.8286 45 1 4.4209 -7.2244 0.7299 46 1 3.6517 -1.5743 2.1954 47 1 3.9902 0.0003 1.4318 48 1 1.3461 -1.7793 5.3168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132240392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:30 Heat of formation + Delta-G solvation = -130.497035 kcal Electronic energy + Delta-G solvation = -31894.712028 eV Core-core repulsion = 27620.085045 eV Total energy + Delta-G solvation = -4274.626983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -49.03755 -46.98917 -40.18654 -38.29419 -36.63842 -34.31254 -32.76267 -31.46094 -30.74327 -29.86561 -28.47691 -26.39921 -24.94961 -24.74957 -22.62558 -22.28384 -20.71146 -20.39205 -19.33237 -18.93695 -18.04067 -17.10080 -17.01992 -16.50608 -15.97505 -15.40672 -15.22308 -14.92126 -14.40087 -14.09716 -13.91332 -13.82160 -13.65796 -13.42168 -13.39493 -13.26472 -12.94704 -12.78434 -12.59128 -12.37219 -12.20880 -11.79214 -11.44085 -11.32140 -11.24606 -11.03724 -10.94318 -10.88321 -10.80364 -10.66040 -10.53672 -10.47704 -10.30577 -10.25592 -9.95611 -9.85161 -9.53624 -9.36953 -8.64843 -8.30003 -6.70934 -6.10197 -3.39883 2.86261 3.40209 3.43559 3.51211 3.55745 3.74463 4.09435 4.38170 4.52206 4.57356 4.87621 4.91704 4.96825 5.10002 5.17330 5.27872 5.28791 5.40767 5.41680 5.61019 5.63105 5.77185 5.79063 5.92420 5.93818 5.99541 6.07444 6.12778 6.15365 6.23702 6.27277 6.30756 6.31529 6.42485 6.44619 6.46679 6.49884 6.54137 6.75866 6.88280 6.96045 7.01246 7.05527 7.87751 8.01419 8.38571 8.58672 8.97839 9.71126 10.19677 11.04616 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.005648 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.733193 B = 4956.365111 C = 5897.908348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.161 3.839 3 H 0.026 0.974 4 C -0.130 4.130 5 C -0.120 4.120 6 C 0.126 3.874 7 H 0.079 0.921 8 N -0.699 5.699 9 C 0.536 3.464 10 O -0.531 6.531 11 C -0.132 4.132 12 C 0.278 3.722 13 F -0.200 7.200 14 F -0.197 7.197 15 C -0.111 4.111 16 C -0.114 4.114 17 C -0.121 4.121 18 C -0.111 4.111 19 C 0.134 3.866 20 N -0.590 5.590 21 C -0.274 4.274 22 H 0.075 0.925 23 C 0.055 3.945 24 N -0.874 5.874 25 Si 0.840 3.160 26 H -0.290 1.290 27 H -0.299 1.299 28 H -0.262 1.262 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.395 0.605 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.096 0.904 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.031 0.969 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.683 -5.809 -11.645 13.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 H 0.044 0.956 4 C -0.169 4.169 5 C -0.158 4.158 6 C 0.020 3.980 7 H 0.097 0.903 8 N -0.349 5.349 9 C 0.320 3.680 10 O -0.407 6.407 11 C -0.136 4.136 12 C 0.223 3.777 13 F -0.181 7.181 14 F -0.178 7.178 15 C -0.148 4.148 16 C -0.152 4.152 17 C -0.159 4.159 18 C -0.148 4.148 19 C 0.008 3.992 20 N -0.314 5.314 21 C -0.402 4.402 22 H 0.093 0.907 23 C -0.149 4.149 24 N -0.512 5.512 25 Si 0.667 3.333 26 H -0.217 1.217 27 H -0.225 1.225 28 H -0.187 1.187 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.230 0.770 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.114 0.886 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.049 0.951 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.405 -5.777 -11.009 12.663 hybrid contribution 0.173 0.810 0.194 0.851 sum 2.578 -4.967 -10.815 12.177 Atomic orbital electron populations 1.21747 0.95423 1.01659 1.00157 1.20591 0.93514 0.93388 0.86945 0.95636 1.22043 0.94891 1.00853 0.99135 1.21697 0.97200 1.00134 0.96733 1.21575 0.97091 0.81860 0.97488 0.90283 1.45792 1.29389 1.08440 1.51303 1.19622 0.84013 0.85117 0.79260 1.90639 1.24904 1.84485 1.40697 1.22600 1.00840 0.95810 0.94385 1.21725 0.78140 0.83062 0.94734 1.92998 1.40849 1.96653 1.87644 1.92972 1.82538 1.45148 1.97167 1.22450 0.91465 1.04004 0.96904 1.22395 0.98629 0.98361 0.95773 1.22347 0.96903 0.98354 0.98256 1.22161 0.99207 0.96451 0.97007 1.21686 0.85376 0.96660 0.95520 1.44304 1.01987 1.65018 1.20116 1.18460 1.02084 1.35475 0.84175 0.90711 1.25560 0.96551 0.96709 0.96032 1.70054 1.46781 1.31066 1.03294 0.87426 0.80714 0.87000 0.78159 1.21726 1.22535 1.18729 0.92653 0.91896 0.94461 0.92533 0.92507 0.90981 0.92543 0.77005 0.87411 0.90517 0.88756 0.91114 0.89929 0.91429 0.91844 0.88574 0.91499 0.90867 0.95117 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.07 37.16 0.30 -1.91 16 2 C 0.16 2.82 3.50 -67.60 -0.24 2.59 16 3 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 4 C -0.13 -1.80 5.21 -26.61 -0.14 -1.94 16 5 C -0.12 -1.63 5.59 -26.69 -0.15 -1.78 16 6 C 0.13 2.11 2.81 -67.81 -0.19 1.92 16 7 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 8 N -0.70 -11.18 4.51 -53.69 -0.24 -11.42 16 9 C 0.54 9.39 6.19 -10.99 -0.07 9.32 16 10 O -0.53 -11.16 14.87 5.56 0.08 -11.08 16 11 C -0.13 -1.95 0.48 -154.54 -0.07 -2.02 16 12 C 0.28 3.53 4.04 37.16 0.15 3.68 16 13 F -0.20 -2.87 16.68 2.25 0.04 -2.83 16 14 F -0.20 -2.55 16.09 2.25 0.04 -2.51 16 15 C -0.11 -1.63 5.80 -25.07 -0.15 -1.78 16 16 C -0.11 -1.80 6.91 -24.73 -0.17 -1.97 16 17 C -0.12 -1.67 6.83 -25.10 -0.17 -1.84 16 18 C -0.11 -1.65 5.68 -25.64 -0.15 -1.80 16 19 C 0.13 2.79 4.19 -3.71 -0.02 2.77 16 20 N -0.59 -12.43 2.39 -164.77 -0.39 -12.82 16 21 C -0.27 -6.81 8.44 -15.06 -0.13 -6.94 16 22 H 0.08 1.99 6.81 -52.49 -0.36 1.63 16 23 C 0.05 1.47 4.82 -17.43 -0.08 1.39 16 24 N -0.87 -24.80 13.97 55.49 0.78 -24.03 16 25 Si 0.84 21.06 27.39 -169.99 -4.66 16.41 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 27 H -0.30 -7.76 7.11 56.52 0.40 -7.35 16 28 H -0.26 -6.36 5.24 56.52 0.30 -6.06 16 29 H 0.05 0.95 7.38 -51.93 -0.38 0.57 16 30 H 0.06 1.18 7.71 -51.93 -0.40 0.78 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.77 6.40 -51.93 -0.33 0.44 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.39 5.55 6.02 -40.82 -0.25 5.31 16 37 H 0.11 1.08 7.49 -51.93 -0.39 0.69 16 38 H 0.08 0.97 7.25 -51.93 -0.38 0.60 16 39 H 0.09 1.60 7.51 -51.93 -0.39 1.21 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.08 1.60 8.14 -51.94 -0.42 1.18 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.63 6.39 -51.93 -0.33 1.30 16 45 H 0.07 0.93 7.32 -51.93 -0.38 0.55 16 46 H 0.07 1.79 7.01 -51.93 -0.36 1.43 16 47 H 0.03 0.66 6.71 -51.93 -0.35 0.31 16 48 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 367.07 15.07 5.53 5.53 Total: -1.00 -29.17 367.07 -7.83 -37.00 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.74 Total: 6.06 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.27 Total: -0.32 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.14 Total: -48.27 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.07 Total: -5.34 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.66 Total: 16.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.17 -7.83 -37.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132240392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.496 kcal (2) G-P(sol) polarization free energy of solvation -29.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds