Wall clock time and date at job start Tue Mar 31 2020 16:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58552 * 2 1 4 4 C 1.53192 * 109.58854 * 239.71101 * 2 1 3 5 5 C 1.53035 * 109.31190 * 185.57658 * 4 2 1 6 6 C 1.53043 * 109.53740 * 61.36820 * 5 4 2 7 7 H 1.09005 * 109.49544 * 178.65073 * 6 5 4 8 8 N 1.46491 * 109.49854 * 58.58554 * 6 5 4 9 9 C 1.34781 * 120.00175 * 155.00046 * 8 6 5 10 10 O 1.21274 * 119.99700 * 359.97438 * 9 8 6 11 11 C 1.50696 * 119.99784 * 179.97438 * 9 8 6 12 12 C 1.53001 * 110.01922 * 58.61254 * 11 9 8 13 13 F 1.39898 * 109.47356 * 61.38764 * 12 11 9 14 14 F 1.39898 * 109.47245 * 181.39068 * 12 11 9 15 15 C 1.54268 * 110.07606 * 297.19065 * 11 9 8 16 16 C 1.54897 * 104.19416 * 264.30726 * 15 11 9 17 17 C 1.54891 * 102.74616 * 322.05547 * 16 15 11 18 18 C 1.53881 * 110.03046 * 180.02562 * 11 9 8 19 19 C 1.53191 * 109.31183 * 298.63176 * 6 5 4 20 20 N 1.46924 * 108.77402 * 54.63541 * 19 6 5 21 21 C 1.36938 * 120.63000 * 126.37106 * 20 19 6 22 22 H 1.08001 * 119.99739 * 221.15592 * 21 20 19 23 23 C 1.38817 * 120.00108 * 41.14836 * 21 20 19 24 24 N 1.31616 * 119.99980 * 214.88421 * 23 21 20 25 25 Si 1.86799 * 119.99702 * 34.88702 * 23 21 20 26 26 H 1.48503 * 109.47316 * 84.62717 * 25 23 21 27 27 H 1.48504 * 109.46977 * 204.62526 * 25 23 21 28 28 H 1.48499 * 109.47242 * 324.62214 * 25 23 21 29 29 H 1.09003 * 109.46805 * 180.28740 * 1 2 3 30 30 H 1.09002 * 109.47295 * 300.28658 * 1 2 3 31 31 H 1.08996 * 109.47074 * 60.28459 * 1 2 3 32 32 H 1.09004 * 109.49502 * 65.63070 * 4 2 1 33 33 H 1.08992 * 109.49789 * 305.53099 * 4 2 1 34 34 H 1.08998 * 109.46416 * 301.34968 * 5 4 2 35 35 H 1.08997 * 109.45170 * 181.37901 * 5 4 2 36 36 H 0.96998 * 120.00093 * 334.99916 * 8 6 5 37 37 H 1.08998 * 109.46703 * 301.38561 * 12 11 9 38 38 H 1.08999 * 110.48598 * 145.63063 * 15 11 9 39 39 H 1.08997 * 110.48089 * 22.98211 * 15 11 9 40 40 H 1.08998 * 110.75418 * 203.74248 * 16 15 11 41 41 H 1.08989 * 110.75530 * 80.36839 * 16 15 11 42 42 H 1.09004 * 110.48576 * 156.62478 * 17 16 15 43 43 H 1.08998 * 110.48681 * 279.26501 * 17 16 15 44 44 H 1.09001 * 110.03081 * 0.04375 * 18 11 9 45 45 H 1.09003 * 110.07039 * 238.64392 * 18 11 9 46 46 H 1.09004 * 109.58792 * 174.42235 * 19 6 5 47 47 H 1.08998 * 109.59056 * 294.84729 * 19 6 5 48 48 H 0.96996 * 120.00102 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2462 5 6 3.5675 -0.8465 -1.1711 6 6 3.9569 -1.6658 0.0616 7 1 5.0412 -1.7701 0.1014 8 7 3.3406 -2.9923 -0.0182 9 6 3.8971 -4.0342 0.6309 10 8 4.9084 -3.8735 1.2807 11 6 3.2627 -5.3987 0.5492 12 6 3.1807 -5.8516 -0.9100 13 9 4.4707 -5.9402 -1.4440 14 9 2.5618 -7.1045 -0.9753 15 6 1.8519 -5.3649 1.1721 16 6 2.0673 -5.8507 2.6271 17 6 3.1396 -6.9563 2.4629 18 6 4.0812 -6.4105 1.3704 19 6 3.4650 -0.9485 1.3227 20 7 2.0225 -0.7009 1.1937 21 6 1.1536 -1.1160 2.1672 22 1 0.2054 -1.5546 1.8934 23 6 1.4915 -0.9732 3.5060 24 7 1.1103 -1.8792 4.3813 25 14 2.4873 0.5050 4.0653 26 1 1.5759 1.6512 4.3120 27 1 3.2106 0.1693 5.3181 28 1 3.4670 0.8696 3.0107 29 1 -0.3633 -1.0277 0.0052 30 1 -0.3634 0.5183 0.8874 31 1 -0.3633 0.5094 -0.8925 32 1 1.7661 -0.1642 -2.1370 33 1 1.6031 -1.7237 -1.2933 34 1 4.0061 0.1487 -1.0990 35 1 3.9377 -1.3424 -2.0683 36 1 2.5320 -3.1209 -0.5383 37 1 2.5993 -5.1289 -1.4825 38 1 1.1833 -6.0410 0.6393 39 1 1.4555 -4.3496 1.1638 40 1 1.1458 -6.2642 3.0367 41 1 2.4405 -5.0407 3.2535 42 1 3.6829 -7.1025 3.3965 43 1 2.6790 -7.8894 2.1384 44 1 4.9367 -5.9143 1.8286 45 1 4.4209 -7.2244 0.7299 46 1 3.6517 -1.5743 2.1954 47 1 3.9902 0.0003 1.4318 48 1 1.3461 -1.7793 5.3168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132240392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:28 Heat of formation + Delta-G solvation = -147.482004 kcal Electronic energy + Delta-G solvation = -31895.448552 eV Core-core repulsion = 27620.085045 eV Total energy + Delta-G solvation = -4275.363506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -50.06784 -48.02036 -41.55657 -39.70198 -38.00381 -35.86539 -34.48225 -32.79699 -32.48217 -31.11539 -29.70415 -27.91246 -26.57438 -25.87547 -24.19857 -23.61475 -22.09177 -21.72131 -20.60959 -20.43948 -19.19903 -18.36773 -18.14757 -18.04761 -17.27969 -16.94249 -16.78818 -16.31105 -15.96894 -15.57209 -15.27353 -15.16966 -14.90958 -14.83791 -14.59133 -14.42644 -14.33182 -14.24431 -14.03503 -13.83017 -13.47122 -13.41507 -12.95994 -12.72182 -12.57330 -12.53007 -12.44008 -12.26204 -12.15010 -12.09273 -12.03593 -11.80364 -11.67191 -11.58133 -11.46411 -11.33949 -11.12581 -10.81159 -10.46940 -9.99573 -8.52024 -8.20831 -5.42500 1.32933 1.41275 1.45289 1.51422 2.13581 2.49830 2.64759 2.99667 3.10165 3.22520 3.32751 3.46781 3.77842 3.86037 3.94198 4.01407 4.06961 4.16579 4.20890 4.38738 4.39573 4.44846 4.58477 4.63548 4.66665 4.69943 4.75270 4.85656 4.87469 4.96493 5.02972 5.04186 5.08470 5.12830 5.15167 5.19446 5.24117 5.26583 5.31502 5.44969 5.59514 5.61338 5.68590 5.98714 6.34164 6.56160 7.08646 7.24401 7.74312 8.25117 8.97613 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.005648 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.733193 B = 4956.365111 C = 5897.908348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.151 3.849 3 H 0.028 0.972 4 C -0.121 4.121 5 C -0.111 4.111 6 C 0.131 3.869 7 H 0.073 0.927 8 N -0.689 5.689 9 C 0.529 3.471 10 O -0.574 6.574 11 C -0.130 4.130 12 C 0.283 3.717 13 F -0.209 7.209 14 F -0.194 7.194 15 C -0.101 4.101 16 C -0.118 4.118 17 C -0.112 4.112 18 C -0.112 4.112 19 C 0.137 3.863 20 N -0.597 5.597 21 C -0.236 4.236 22 H 0.058 0.942 23 C 0.003 3.997 24 N -0.915 5.915 25 Si 0.878 3.122 26 H -0.294 1.294 27 H -0.316 1.316 28 H -0.251 1.251 29 H 0.047 0.953 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.407 0.593 37 H 0.146 0.854 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.032 0.968 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.025 0.975 47 H 0.026 0.974 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 -6.049 -15.733 16.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.047 3.953 3 H 0.046 0.954 4 C -0.159 4.159 5 C -0.149 4.149 6 C 0.024 3.976 7 H 0.091 0.909 8 N -0.340 5.340 9 C 0.314 3.686 10 O -0.453 6.453 11 C -0.134 4.134 12 C 0.229 3.771 13 F -0.190 7.190 14 F -0.175 7.175 15 C -0.138 4.138 16 C -0.156 4.156 17 C -0.150 4.150 18 C -0.150 4.150 19 C 0.010 3.990 20 N -0.322 5.322 21 C -0.365 4.365 22 H 0.076 0.924 23 C -0.196 4.196 24 N -0.558 5.558 25 Si 0.707 3.293 26 H -0.221 1.221 27 H -0.244 1.244 28 H -0.175 1.175 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.244 0.756 37 H 0.163 0.837 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.085 0.915 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.044 0.956 47 H 0.044 0.956 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.865 -5.983 -15.163 16.407 hybrid contribution 0.325 0.906 1.442 1.734 sum 2.190 -5.077 -13.721 14.793 Atomic orbital electron populations 1.21690 0.94807 1.01271 1.00646 1.20898 0.94141 0.93623 0.86644 0.95394 1.21959 0.94682 1.01206 0.98095 1.21690 0.97222 1.00157 0.95794 1.21444 0.96751 0.82226 0.97149 0.90859 1.45737 1.29587 1.07884 1.50791 1.20157 0.83542 0.86434 0.78427 1.90623 1.26976 1.85329 1.42405 1.22559 1.00230 0.94103 0.96512 1.21840 0.78216 0.83821 0.93214 1.92989 1.41750 1.96724 1.87521 1.92981 1.82349 1.45150 1.97026 1.22372 0.91894 1.03207 0.96375 1.22338 0.99620 0.97659 0.95956 1.22321 0.96012 0.98517 0.98106 1.22142 0.98592 0.96718 0.97506 1.21526 0.85332 0.96032 0.96070 1.44420 1.01586 1.65707 1.20519 1.18400 1.01238 1.32383 0.84510 0.92442 1.25989 0.98334 0.98426 0.96814 1.70141 1.49852 1.32638 1.03133 0.86782 0.79821 0.85247 0.77425 1.22140 1.24438 1.17499 0.93413 0.94845 0.90609 0.88859 0.91841 0.90134 0.89284 0.75560 0.83715 0.87356 0.91220 0.90036 0.94880 0.91527 0.89086 0.91358 0.90039 0.95604 0.95608 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 8.07 71.98 0.58 -3.33 16 2 C 0.15 4.87 3.50 44.98 0.16 5.02 16 3 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.12 -2.75 5.21 30.67 0.16 -2.59 16 5 C -0.11 -2.54 5.59 30.62 0.17 -2.37 16 6 C 0.13 4.19 2.81 45.07 0.13 4.31 16 7 H 0.07 2.48 7.58 -2.38 -0.02 2.46 16 8 N -0.69 -21.05 4.51 -442.18 -1.99 -23.04 16 9 C 0.53 18.50 6.19 87.66 0.54 19.05 16 10 O -0.57 -25.04 14.87 -3.01 -0.04 -25.09 16 11 C -0.13 -3.69 0.48 -52.20 -0.03 -3.71 16 12 C 0.28 6.28 4.04 71.98 0.29 6.57 16 13 F -0.21 -5.41 16.68 44.97 0.75 -4.66 16 14 F -0.19 -4.27 16.09 44.97 0.72 -3.55 16 15 C -0.10 -2.88 5.80 31.67 0.18 -2.69 16 16 C -0.12 -3.81 6.91 31.89 0.22 -3.59 16 17 C -0.11 -3.04 6.83 31.65 0.22 -2.82 16 18 C -0.11 -3.29 5.68 31.30 0.18 -3.11 16 19 C 0.14 5.72 4.19 86.36 0.36 6.08 16 20 N -0.60 -24.86 2.39 -675.22 -1.61 -26.47 16 21 C -0.24 -11.95 8.44 84.03 0.71 -11.24 16 22 H 0.06 3.12 6.81 -2.91 -0.02 3.10 16 23 C 0.00 0.18 4.82 84.86 0.41 0.59 16 24 N -0.92 -54.85 13.97 21.65 0.30 -54.55 16 25 Si 0.88 45.08 27.39 68.60 1.88 46.96 16 26 H -0.29 -15.07 7.11 99.48 0.71 -14.36 16 27 H -0.32 -17.05 7.11 99.48 0.71 -16.34 16 28 H -0.25 -12.17 5.24 99.48 0.52 -11.65 16 29 H 0.05 1.53 7.38 -2.39 -0.02 1.51 16 30 H 0.03 1.21 7.71 -2.39 -0.02 1.19 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.40 6.40 -2.39 -0.02 1.38 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.41 10.26 6.02 -92.71 -0.56 9.71 16 37 H 0.15 2.21 7.49 -2.39 -0.02 2.19 16 38 H 0.11 2.42 7.25 -2.39 -0.02 2.41 16 39 H 0.07 2.35 7.51 -2.39 -0.02 2.33 16 40 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.07 2.41 6.39 -2.39 -0.02 2.40 16 45 H 0.08 2.13 7.32 -2.39 -0.02 2.12 16 46 H 0.03 1.31 7.01 -2.39 -0.02 1.29 16 47 H 0.03 1.10 6.71 -2.39 -0.02 1.09 16 48 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -68.62 367.07 4.51 -64.11 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.22 Total: 20.12 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 4.28 Total: 6.18 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -3.30 Total: -104.06 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.04 Total: -25.09 kcal Atomic # 9 Polarization: -9.68 SS G_CDS: 1.47 Total: -8.20 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Total: -68.62 4.51 -64.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132240392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.373 kcal (2) G-P(sol) polarization free energy of solvation -68.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds