Wall clock time and date at job start Tue Mar 31 2020 16:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.58496 * 2 1 4 4 C 1.53196 * 109.58568 * 120.28099 * 2 1 3 5 5 C 1.53042 * 109.31188 * 174.42192 * 4 2 1 6 6 C 1.53034 * 109.53991 * 298.63982 * 5 4 2 7 7 H 1.09000 * 109.49940 * 181.35179 * 6 5 4 8 8 N 1.46503 * 109.49522 * 301.41046 * 6 5 4 9 9 C 1.34775 * 120.00212 * 204.65761 * 8 6 5 10 10 O 1.21282 * 119.99690 * 0.28545 * 9 8 6 11 11 C 1.50700 * 120.00135 * 180.27745 * 9 8 6 12 12 C 1.52996 * 110.43520 * 59.30360 * 11 9 8 13 13 F 1.39899 * 109.47077 * 60.69959 * 12 11 9 14 14 F 1.39896 * 109.47087 * 180.69742 * 12 11 9 15 15 C 1.54886 * 110.48708 * 296.75987 * 11 9 8 16 16 C 1.55240 * 102.59002 * 279.19048 * 15 11 9 17 17 C 1.54267 * 104.22868 * 322.08242 * 16 15 11 18 18 C 1.53874 * 106.60013 * 23.61247 * 17 16 15 19 19 C 1.53192 * 109.34163 * 61.38117 * 6 5 4 20 20 N 1.46925 * 109.58949 * 239.57135 * 2 1 3 21 21 C 1.36934 * 120.62931 * 6.62869 * 20 2 1 22 22 H 1.08003 * 120.00224 * 330.09310 * 21 20 2 23 23 C 1.38818 * 119.99918 * 150.08948 * 21 20 2 24 24 N 1.31619 * 120.00273 * 344.62084 * 23 21 20 25 25 Si 1.86796 * 119.99826 * 164.61386 * 23 21 20 26 26 H 1.48501 * 109.47408 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47305 * 120.00175 * 25 23 21 28 28 H 1.48504 * 109.47606 * 240.00442 * 25 23 21 29 29 H 1.08993 * 109.47282 * 299.71802 * 1 2 3 30 30 H 1.09004 * 109.46585 * 59.72009 * 1 2 3 31 31 H 1.09001 * 109.47231 * 179.71183 * 1 2 3 32 32 H 1.09002 * 109.49571 * 54.47383 * 4 2 1 33 33 H 1.08995 * 109.49631 * 294.37675 * 4 2 1 34 34 H 1.08997 * 109.45612 * 178.61748 * 5 4 2 35 35 H 1.09003 * 109.45754 * 58.66034 * 5 4 2 36 36 H 0.97002 * 120.00097 * 24.94342 * 8 6 5 37 37 H 1.09001 * 109.46958 * 300.70148 * 12 11 9 38 38 H 1.09005 * 110.75725 * 37.58165 * 15 11 9 39 39 H 1.09001 * 110.75507 * 160.95074 * 15 11 9 40 40 H 1.08999 * 110.46733 * 203.39445 * 16 15 11 41 41 H 1.08996 * 110.47410 * 80.77549 * 16 15 11 42 42 H 1.09005 * 110.03422 * 264.32728 * 17 16 15 43 43 H 1.09005 * 110.03177 * 142.89741 * 17 16 15 44 44 H 1.08997 * 110.03152 * 240.71395 * 18 17 16 45 45 H 1.08996 * 110.03054 * 119.27996 * 18 17 16 46 46 H 1.08992 * 109.58766 * 65.13791 * 19 6 5 47 47 H 1.09004 * 109.58682 * 185.56385 * 19 6 5 48 48 H 0.96997 * 120.00272 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5675 -0.8465 1.1713 6 6 3.9569 -1.6657 -0.0613 7 1 5.0412 -1.7701 -0.1010 8 7 3.3406 -2.9923 0.0187 9 6 3.8932 -4.0328 -0.6360 10 8 4.9037 -3.8718 -1.2871 11 6 3.2557 -5.3961 -0.5588 12 6 1.8226 -5.3466 -1.0923 13 9 1.8371 -4.9405 -2.4309 14 9 1.2453 -6.6173 -0.9967 15 6 3.2740 -5.9214 0.8982 16 6 4.7193 -6.4694 1.0422 17 6 5.0203 -7.1099 -0.3286 18 6 4.0898 -6.4275 -1.3465 19 6 3.4658 -0.9488 -1.3229 20 7 2.0226 -0.7011 -1.1936 21 6 1.1538 -1.1154 -2.1675 22 1 0.1400 -1.3831 -1.9087 23 6 1.5762 -1.1914 -3.4877 24 7 2.6877 -0.5920 -3.8587 25 14 0.5670 -2.1445 -4.7377 26 1 -0.6292 -2.7205 -4.0726 27 1 0.1358 -1.2307 -5.8261 28 1 1.3919 -3.2395 -5.3086 29 1 -0.3633 0.5094 0.8924 30 1 -0.3633 0.5182 -0.8875 31 1 -0.3634 -1.0277 -0.0052 32 1 1.6030 -1.7237 1.2935 33 1 1.7659 -0.1641 2.1370 34 1 3.9377 -1.3422 2.0686 35 1 4.0061 0.1488 1.0992 36 1 2.5324 -3.1211 0.5394 37 1 1.2402 -4.6377 -0.5038 38 1 3.0937 -5.1102 1.6036 39 1 2.5431 -6.7192 1.0303 40 1 4.7656 -7.2192 1.8320 41 1 5.4167 -5.6568 1.2449 42 1 4.8150 -8.1799 -0.2940 43 1 6.0617 -6.9376 -0.6006 44 1 3.4330 -7.1662 -1.8059 45 1 4.6796 -5.9240 -2.1125 46 1 3.9910 -0.0001 -1.4320 47 1 3.6530 -1.5749 -2.1953 48 1 2.9830 -0.6454 -4.7811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132240393.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:34 Heat of formation + Delta-G solvation = -131.708055 kcal Electronic energy + Delta-G solvation = -32142.804806 eV Core-core repulsion = 27868.125310 eV Total energy + Delta-G solvation = -4274.679497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -48.75397 -46.68011 -40.15652 -38.19149 -36.61587 -34.19775 -32.75819 -31.41236 -30.05051 -29.75350 -28.72587 -26.22037 -24.97781 -24.70705 -22.65532 -22.16676 -20.76878 -20.40414 -19.31401 -18.77094 -17.83447 -16.93066 -16.80508 -16.29996 -15.97796 -15.40547 -15.36539 -14.72140 -14.21499 -14.03204 -13.86734 -13.63387 -13.55769 -13.38487 -13.21669 -12.99531 -12.97331 -12.81782 -12.49482 -12.23379 -11.94068 -11.51089 -11.37552 -11.23430 -11.18281 -11.16502 -11.11829 -10.94652 -10.89247 -10.66717 -10.50421 -10.40246 -10.37503 -10.30292 -9.94514 -9.56721 -9.47348 -9.32366 -8.42969 -8.41523 -6.58188 -5.72530 -3.17551 2.91540 3.43567 3.51111 3.52410 3.54614 3.87743 4.23369 4.36221 4.47514 4.54816 4.85959 4.98060 5.08330 5.19710 5.29335 5.34306 5.36773 5.39136 5.44218 5.49239 5.56346 5.58575 5.62146 5.68685 5.86801 5.95681 5.98020 6.07338 6.09326 6.13370 6.19580 6.29586 6.32801 6.40919 6.41608 6.48480 6.56893 6.65690 6.85930 7.03278 7.09352 7.36352 7.68820 7.86337 7.99329 8.51189 8.67818 9.25840 9.90508 10.46132 11.35426 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.006436 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.311970 B = 4349.718500 C = 5455.728502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.119 3.881 7 H 0.076 0.924 8 N -0.698 5.698 9 C 0.534 3.466 10 O -0.527 6.527 11 C -0.137 4.137 12 C 0.279 3.721 13 F -0.184 7.184 14 F -0.204 7.204 15 C -0.110 4.110 16 C -0.120 4.120 17 C -0.117 4.117 18 C -0.108 4.108 19 C 0.162 3.838 20 N -0.582 5.582 21 C -0.253 4.253 22 H 0.067 0.933 23 C 0.013 3.987 24 N -0.897 5.897 25 Si 0.891 3.109 26 H -0.278 1.278 27 H -0.293 1.293 28 H -0.286 1.286 29 H 0.036 0.964 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.392 0.608 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.025 0.975 47 H 0.096 0.904 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.853 -8.978 13.249 16.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.013 3.987 7 H 0.094 0.906 8 N -0.348 5.348 9 C 0.318 3.682 10 O -0.403 6.403 11 C -0.141 4.141 12 C 0.225 3.775 13 F -0.165 7.165 14 F -0.185 7.185 15 C -0.148 4.148 16 C -0.158 4.158 17 C -0.155 4.155 18 C -0.146 4.146 19 C 0.036 3.964 20 N -0.305 5.305 21 C -0.383 4.383 22 H 0.084 0.916 23 C -0.186 4.186 24 N -0.541 5.541 25 Si 0.722 3.278 26 H -0.203 1.203 27 H -0.220 1.220 28 H -0.213 1.213 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.227 0.773 37 H 0.128 0.872 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.110 0.890 46 H 0.043 0.957 47 H 0.114 0.886 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.638 -8.837 12.563 15.447 hybrid contribution -1.003 -0.508 -0.688 1.318 sum 0.636 -9.345 11.875 15.124 Atomic orbital electron populations 1.21788 0.96131 1.01168 1.00159 1.20464 0.92872 0.93663 0.87231 0.95791 1.22067 0.95125 1.00523 0.99212 1.21686 0.97016 1.00195 0.96717 1.21814 0.96919 0.81561 0.98387 0.90630 1.45835 1.29284 1.08718 1.50970 1.19469 0.84806 0.84565 0.79373 1.90671 1.25161 1.84184 1.40293 1.22811 0.94853 0.96886 0.99552 1.21590 0.93519 0.80943 0.81475 1.93095 1.97244 1.90165 1.36030 1.92941 1.85868 1.43458 1.96244 1.22634 0.98977 1.01066 0.92079 1.22377 0.95566 1.00272 0.97537 1.22055 0.99933 0.99269 0.94205 1.22095 0.97795 0.96078 0.98601 1.21179 0.83845 0.97055 0.94350 1.44051 1.02633 1.64672 1.19155 1.19040 0.94975 1.38255 0.85983 0.91566 1.25019 0.97585 0.99043 0.96973 1.69987 1.23875 1.43546 1.16663 0.86401 0.79825 0.79807 0.81815 1.20312 1.22028 1.21276 0.94480 0.92028 0.93048 0.92910 0.92838 0.93059 0.91056 0.77342 0.87171 0.90510 0.89543 0.91144 0.91300 0.91736 0.91367 0.90880 0.89002 0.95683 0.88586 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 7.95 37.16 0.30 -2.06 16 2 C 0.16 3.11 3.50 -67.60 -0.24 2.88 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -1.94 5.21 -26.61 -0.14 -2.08 16 5 C -0.12 -1.75 5.59 -26.69 -0.15 -1.90 16 6 C 0.12 2.16 2.81 -67.81 -0.19 1.97 16 7 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 8 N -0.70 -11.64 4.62 -53.69 -0.25 -11.89 16 9 C 0.53 9.56 6.05 -10.99 -0.07 9.49 16 10 O -0.53 -11.43 15.09 5.56 0.08 -11.35 16 11 C -0.14 -2.01 0.44 -154.00 -0.07 -2.07 16 12 C 0.28 4.38 4.27 37.16 0.16 4.54 16 13 F -0.18 -3.80 16.90 2.25 0.04 -3.76 16 14 F -0.20 -2.99 15.80 2.25 0.04 -2.96 16 15 C -0.11 -1.20 5.79 -24.55 -0.14 -1.34 16 16 C -0.12 -1.27 6.62 -24.88 -0.16 -1.43 16 17 C -0.12 -1.36 6.80 -25.61 -0.17 -1.54 16 18 C -0.11 -1.58 5.50 -25.61 -0.14 -1.72 16 19 C 0.16 3.77 4.88 -3.67 -0.02 3.75 16 20 N -0.58 -13.36 2.90 -164.72 -0.48 -13.84 16 21 C -0.25 -6.54 8.58 -15.06 -0.13 -6.67 16 22 H 0.07 1.69 6.23 -52.48 -0.33 1.36 16 23 C 0.01 0.37 4.94 -17.43 -0.09 0.28 16 24 N -0.90 -26.33 11.23 55.49 0.62 -25.71 16 25 Si 0.89 22.55 29.58 -169.99 -5.03 17.52 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 31 H 0.05 0.90 7.40 -51.93 -0.38 0.51 16 32 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.39 5.72 5.97 -40.82 -0.24 5.48 16 37 H 0.11 1.54 7.59 -51.93 -0.39 1.14 16 38 H 0.08 0.74 7.63 -51.93 -0.40 0.35 16 39 H 0.09 0.84 7.42 -51.93 -0.39 0.46 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.03 7.29 -51.93 -0.38 0.65 16 45 H 0.09 1.59 6.86 -51.93 -0.36 1.23 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.10 2.67 6.15 -51.93 -0.32 2.35 16 48 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -31.13 370.28 -8.31 -39.45 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.67 Total: 4.87 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.25 Total: 2.09 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.10 Total: -51.44 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 0.07 Total: -6.72 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.52 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.13 -8.31 -39.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132240393.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.261 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds