Wall clock time and date at job start Tue Mar 31 2020 16:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.58496 * 2 1 4 4 C 1.53196 * 109.58568 * 120.28099 * 2 1 3 5 5 C 1.53042 * 109.31188 * 174.42192 * 4 2 1 6 6 C 1.53034 * 109.53991 * 298.63982 * 5 4 2 7 7 H 1.09000 * 109.49940 * 181.35179 * 6 5 4 8 8 N 1.46503 * 109.49522 * 301.41046 * 6 5 4 9 9 C 1.34775 * 120.00212 * 204.65761 * 8 6 5 10 10 O 1.21282 * 119.99690 * 0.28545 * 9 8 6 11 11 C 1.50700 * 120.00135 * 180.27745 * 9 8 6 12 12 C 1.52996 * 110.43520 * 59.30360 * 11 9 8 13 13 F 1.39899 * 109.47077 * 60.69959 * 12 11 9 14 14 F 1.39896 * 109.47087 * 180.69742 * 12 11 9 15 15 C 1.54886 * 110.48708 * 296.75987 * 11 9 8 16 16 C 1.55240 * 102.59002 * 279.19048 * 15 11 9 17 17 C 1.54267 * 104.22868 * 322.08242 * 16 15 11 18 18 C 1.53874 * 106.60013 * 23.61247 * 17 16 15 19 19 C 1.53192 * 109.34163 * 61.38117 * 6 5 4 20 20 N 1.46925 * 109.58949 * 239.57135 * 2 1 3 21 21 C 1.36934 * 120.62931 * 6.62869 * 20 2 1 22 22 H 1.08003 * 120.00224 * 330.09310 * 21 20 2 23 23 C 1.38818 * 119.99918 * 150.08948 * 21 20 2 24 24 N 1.31619 * 120.00273 * 344.62084 * 23 21 20 25 25 Si 1.86796 * 119.99826 * 164.61386 * 23 21 20 26 26 H 1.48501 * 109.47408 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47305 * 120.00175 * 25 23 21 28 28 H 1.48504 * 109.47606 * 240.00442 * 25 23 21 29 29 H 1.08993 * 109.47282 * 299.71802 * 1 2 3 30 30 H 1.09004 * 109.46585 * 59.72009 * 1 2 3 31 31 H 1.09001 * 109.47231 * 179.71183 * 1 2 3 32 32 H 1.09002 * 109.49571 * 54.47383 * 4 2 1 33 33 H 1.08995 * 109.49631 * 294.37675 * 4 2 1 34 34 H 1.08997 * 109.45612 * 178.61748 * 5 4 2 35 35 H 1.09003 * 109.45754 * 58.66034 * 5 4 2 36 36 H 0.97002 * 120.00097 * 24.94342 * 8 6 5 37 37 H 1.09001 * 109.46958 * 300.70148 * 12 11 9 38 38 H 1.09005 * 110.75725 * 37.58165 * 15 11 9 39 39 H 1.09001 * 110.75507 * 160.95074 * 15 11 9 40 40 H 1.08999 * 110.46733 * 203.39445 * 16 15 11 41 41 H 1.08996 * 110.47410 * 80.77549 * 16 15 11 42 42 H 1.09005 * 110.03422 * 264.32728 * 17 16 15 43 43 H 1.09005 * 110.03177 * 142.89741 * 17 16 15 44 44 H 1.08997 * 110.03152 * 240.71395 * 18 17 16 45 45 H 1.08996 * 110.03054 * 119.27996 * 18 17 16 46 46 H 1.08992 * 109.58766 * 65.13791 * 19 6 5 47 47 H 1.09004 * 109.58682 * 185.56385 * 19 6 5 48 48 H 0.96997 * 120.00272 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5675 -0.8465 1.1713 6 6 3.9569 -1.6657 -0.0613 7 1 5.0412 -1.7701 -0.1010 8 7 3.3406 -2.9923 0.0187 9 6 3.8932 -4.0328 -0.6360 10 8 4.9037 -3.8718 -1.2871 11 6 3.2557 -5.3961 -0.5588 12 6 1.8226 -5.3466 -1.0923 13 9 1.8371 -4.9405 -2.4309 14 9 1.2453 -6.6173 -0.9967 15 6 3.2740 -5.9214 0.8982 16 6 4.7193 -6.4694 1.0422 17 6 5.0203 -7.1099 -0.3286 18 6 4.0898 -6.4275 -1.3465 19 6 3.4658 -0.9488 -1.3229 20 7 2.0226 -0.7011 -1.1936 21 6 1.1538 -1.1154 -2.1675 22 1 0.1400 -1.3831 -1.9087 23 6 1.5762 -1.1914 -3.4877 24 7 2.6877 -0.5920 -3.8587 25 14 0.5670 -2.1445 -4.7377 26 1 -0.6292 -2.7205 -4.0726 27 1 0.1358 -1.2307 -5.8261 28 1 1.3919 -3.2395 -5.3086 29 1 -0.3633 0.5094 0.8924 30 1 -0.3633 0.5182 -0.8875 31 1 -0.3634 -1.0277 -0.0052 32 1 1.6030 -1.7237 1.2935 33 1 1.7659 -0.1641 2.1370 34 1 3.9377 -1.3422 2.0686 35 1 4.0061 0.1488 1.0992 36 1 2.5324 -3.1211 0.5394 37 1 1.2402 -4.6377 -0.5038 38 1 3.0937 -5.1102 1.6036 39 1 2.5431 -6.7192 1.0303 40 1 4.7656 -7.2192 1.8320 41 1 5.4167 -5.6568 1.2449 42 1 4.8150 -8.1799 -0.2940 43 1 6.0617 -6.9376 -0.6006 44 1 3.4330 -7.1662 -1.8059 45 1 4.6796 -5.9240 -2.1125 46 1 3.9910 -0.0001 -1.4320 47 1 3.6530 -1.5749 -2.1953 48 1 2.9830 -0.6454 -4.7811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132240393.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:33 Heat of formation + Delta-G solvation = -150.601823 kcal Electronic energy + Delta-G solvation = -32143.624102 eV Core-core repulsion = 27868.125310 eV Total energy + Delta-G solvation = -4275.498792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.06552 -48.03793 -41.51810 -39.62270 -37.90811 -35.82749 -34.51625 -32.74653 -31.74452 -31.10918 -29.71895 -27.83577 -26.74450 -25.86490 -24.08363 -23.69825 -22.10783 -21.57102 -20.58908 -20.37082 -19.09575 -18.30854 -18.14155 -17.99276 -17.33954 -16.98260 -16.71638 -16.08466 -15.78582 -15.61904 -15.38770 -15.05654 -14.93655 -14.71641 -14.51379 -14.39242 -14.33823 -14.17288 -13.97409 -13.60103 -13.46922 -13.00719 -12.87689 -12.64708 -12.53717 -12.52140 -12.39549 -12.28825 -12.20011 -12.11225 -12.06307 -12.03906 -11.65663 -11.55234 -11.38611 -11.18923 -11.02903 -10.81064 -10.51730 -9.96864 -8.55386 -7.82113 -5.26339 1.36046 1.43761 1.47321 1.52959 2.17858 2.49819 2.67275 3.10706 3.20359 3.36521 3.36833 3.64739 3.75042 3.85176 3.97250 4.05766 4.12335 4.18120 4.21776 4.38417 4.42521 4.50993 4.53705 4.67368 4.70718 4.76424 4.80365 4.85467 4.98877 5.00216 5.01994 5.07831 5.11563 5.15634 5.16643 5.20736 5.30123 5.35339 5.42535 5.60384 5.63577 5.69437 5.75918 5.76703 6.45402 6.61732 7.20644 7.30727 7.95241 8.45115 9.23042 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.006436 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.311970 B = 4349.718500 C = 5455.728502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.012 0.988 4 C -0.118 4.118 5 C -0.109 4.109 6 C 0.129 3.871 7 H 0.064 0.936 8 N -0.687 5.687 9 C 0.530 3.470 10 O -0.575 6.575 11 C -0.134 4.134 12 C 0.273 3.727 13 F -0.219 7.219 14 F -0.195 7.195 15 C -0.100 4.100 16 C -0.116 4.116 17 C -0.114 4.114 18 C -0.113 4.113 19 C 0.172 3.828 20 N -0.592 5.592 21 C -0.227 4.227 22 H 0.077 0.923 23 C -0.045 4.045 24 N -0.935 5.935 25 Si 0.933 3.067 26 H -0.258 1.258 27 H -0.297 1.297 28 H -0.309 1.309 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.406 0.594 37 H 0.134 0.866 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.055 0.945 42 H 0.088 0.912 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.051 0.949 46 H -0.006 1.006 47 H 0.043 0.957 48 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.944 -10.305 17.853 20.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.030 0.970 4 C -0.157 4.157 5 C -0.147 4.147 6 C 0.023 3.977 7 H 0.083 0.917 8 N -0.337 5.337 9 C 0.315 3.685 10 O -0.454 6.454 11 C -0.138 4.138 12 C 0.219 3.781 13 F -0.201 7.201 14 F -0.176 7.176 15 C -0.138 4.138 16 C -0.154 4.154 17 C -0.152 4.152 18 C -0.151 4.151 19 C 0.045 3.955 20 N -0.316 5.316 21 C -0.358 4.358 22 H 0.095 0.905 23 C -0.240 4.240 24 N -0.582 5.582 25 Si 0.764 3.236 26 H -0.182 1.182 27 H -0.224 1.224 28 H -0.237 1.237 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.244 0.756 37 H 0.152 0.848 38 H 0.115 0.885 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.070 0.930 46 H 0.012 0.988 47 H 0.062 0.938 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.220 -10.168 17.232 20.010 hybrid contribution -0.448 -0.050 -2.110 2.158 sum -0.668 -10.218 15.122 18.263 Atomic orbital electron populations 1.21728 0.94694 1.01455 1.00734 1.20797 0.94164 0.93211 0.87123 0.97047 1.21959 0.94620 1.01193 0.97952 1.21661 0.97346 0.99789 0.95911 1.21487 0.96275 0.82301 0.97615 0.91746 1.45708 1.29570 1.07800 1.50668 1.20074 0.84246 0.85931 0.78242 1.90658 1.27521 1.85110 1.42089 1.22821 0.93726 0.94722 1.02525 1.21943 0.94592 0.81725 0.79872 1.93031 1.97449 1.90650 1.38955 1.92951 1.85692 1.42897 1.96044 1.22745 0.99736 1.02248 0.89041 1.22393 0.94966 1.00601 0.97417 1.22066 0.98554 1.00462 0.94103 1.22110 0.98100 0.96121 0.98750 1.20843 0.84299 0.95185 0.95219 1.44259 1.02061 1.65349 1.19933 1.19359 0.95309 1.35014 0.86084 0.90518 1.25579 0.98647 1.01001 0.98821 1.70138 1.25854 1.46270 1.15945 0.85691 0.79162 0.78210 0.80494 1.18219 1.22442 1.23708 0.90598 0.94904 0.92755 0.91496 0.89051 0.89190 0.91104 0.75639 0.84848 0.88474 0.87346 0.87911 0.92609 0.89356 0.92371 0.90617 0.93008 0.98773 0.93814 0.95093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 7.95 71.98 0.57 -3.51 16 2 C 0.15 5.40 3.50 44.98 0.16 5.56 16 3 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 4 C -0.12 -2.96 5.21 30.67 0.16 -2.80 16 5 C -0.11 -2.84 5.59 30.62 0.17 -2.67 16 6 C 0.13 4.62 2.81 45.07 0.13 4.75 16 7 H 0.06 2.46 7.58 -2.39 -0.02 2.45 16 8 N -0.69 -21.85 4.62 -442.17 -2.04 -23.90 16 9 C 0.53 18.95 6.05 87.66 0.53 19.48 16 10 O -0.57 -26.23 15.09 -3.04 -0.05 -26.28 16 11 C -0.13 -3.75 0.44 -51.85 -0.02 -3.77 16 12 C 0.27 8.14 4.27 71.98 0.31 8.45 16 13 F -0.22 -9.21 16.90 44.97 0.76 -8.45 16 14 F -0.19 -5.24 15.80 44.97 0.71 -4.53 16 15 C -0.10 -1.78 5.79 32.01 0.19 -1.60 16 16 C -0.12 -2.07 6.62 31.79 0.21 -1.86 16 17 C -0.11 -2.49 6.80 31.32 0.21 -2.27 16 18 C -0.11 -3.31 5.50 31.32 0.17 -3.14 16 19 C 0.17 8.27 4.88 86.35 0.42 8.69 16 20 N -0.59 -27.19 2.90 -675.04 -1.96 -29.15 16 21 C -0.23 -11.80 8.58 84.04 0.72 -11.08 16 22 H 0.08 3.81 6.23 -2.91 -0.02 3.79 16 23 C -0.05 -2.61 4.94 84.86 0.42 -2.19 16 24 N -0.93 -58.26 11.23 21.65 0.24 -58.02 16 25 Si 0.93 47.92 29.58 68.60 2.03 49.95 16 26 H -0.26 -12.23 7.11 99.48 0.71 -11.53 16 27 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 28 H -0.31 -16.85 7.11 99.48 0.71 -16.14 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.03 1.21 7.67 -2.38 -0.02 1.19 16 31 H 0.05 1.68 7.40 -2.39 -0.02 1.67 16 32 H 0.07 1.53 6.40 -2.39 -0.02 1.51 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.41 10.39 5.97 -92.71 -0.55 9.84 16 37 H 0.13 3.32 7.59 -2.39 -0.02 3.31 16 38 H 0.10 1.37 7.63 -2.38 -0.02 1.35 16 39 H 0.11 1.54 7.42 -2.39 -0.02 1.52 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.08 2.12 7.29 -2.39 -0.02 2.10 16 45 H 0.05 1.92 6.86 -2.39 -0.02 1.91 16 46 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 47 H 0.04 2.58 6.15 -2.39 -0.01 2.57 16 48 H 0.24 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -75.14 370.28 4.45 -70.69 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.41 Total: 17.65 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 4.34 Total: 12.03 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -3.76 Total: -111.06 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.05 Total: -26.28 kcal Atomic # 9 Polarization: -14.45 SS G_CDS: 1.47 Total: -12.98 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Total: -75.14 4.45 -70.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132240393.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.914 kcal (2) G-P(sol) polarization free energy of solvation -75.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds