Wall clock time and date at job start Tue Mar 31 2020 16:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.58440 * 2 1 4 4 C 1.53164 * 109.70516 * 239.63929 * 2 1 3 5 5 C 1.53043 * 109.32616 * 185.49640 * 4 2 1 6 6 C 1.53038 * 109.52489 * 61.37578 * 5 4 2 7 7 H 1.08990 * 109.50236 * 58.62206 * 6 5 4 8 8 N 1.46505 * 109.49639 * 178.69257 * 6 5 4 9 9 C 1.34779 * 119.99636 * 204.99943 * 8 6 5 10 10 O 1.21271 * 120.00115 * 359.97438 * 9 8 6 11 11 C 1.50702 * 119.99725 * 179.97438 * 9 8 6 12 12 C 1.53003 * 110.43267 * 57.45804 * 11 9 8 13 13 F 1.39897 * 109.46999 * 60.70261 * 12 11 9 14 14 F 1.39901 * 109.47143 * 180.70037 * 12 11 9 15 15 C 1.54890 * 110.48677 * 294.77509 * 11 9 8 16 16 C 1.54881 * 102.74673 * 279.26264 * 15 11 9 17 17 C 1.54266 * 104.19955 * 322.05764 * 16 15 11 18 18 C 1.53880 * 106.59449 * 23.61166 * 17 16 15 19 19 C 1.53193 * 109.31111 * 298.63687 * 6 5 4 20 20 N 1.46924 * 109.59035 * 120.28596 * 2 1 3 21 21 C 1.36935 * 120.63204 * 353.51575 * 20 2 1 22 22 H 1.08007 * 120.00042 * 29.53080 * 21 20 2 23 23 C 1.38807 * 120.00149 * 209.53727 * 21 20 2 24 24 N 1.31616 * 120.00413 * 15.61498 * 23 21 20 25 25 Si 1.86807 * 119.99951 * 195.61833 * 23 21 20 26 26 H 1.48499 * 109.47121 * 94.71863 * 25 23 21 27 27 H 1.48497 * 109.46941 * 214.71938 * 25 23 21 28 28 H 1.48501 * 109.47134 * 334.71705 * 25 23 21 29 29 H 1.09000 * 109.47223 * 299.70924 * 1 2 3 30 30 H 1.08990 * 109.47451 * 59.71565 * 1 2 3 31 31 H 1.09005 * 109.46948 * 179.71700 * 1 2 3 32 32 H 1.09006 * 109.47696 * 65.55062 * 4 2 1 33 33 H 1.08997 * 109.50527 * 305.46053 * 4 2 1 34 34 H 1.09002 * 109.46106 * 301.36118 * 5 4 2 35 35 H 1.08998 * 109.45806 * 181.38324 * 5 4 2 36 36 H 0.96994 * 119.99824 * 24.99135 * 8 6 5 37 37 H 1.09003 * 109.47329 * 300.69932 * 12 11 9 38 38 H 1.08998 * 110.75806 * 37.57858 * 15 11 9 39 39 H 1.09003 * 110.75472 * 160.95002 * 15 11 9 40 40 H 1.09003 * 110.48645 * 203.38211 * 16 15 11 41 41 H 1.09001 * 110.48649 * 80.73880 * 16 15 11 42 42 H 1.08996 * 110.03323 * 264.32834 * 17 16 15 43 43 H 1.09001 * 110.03437 * 142.89227 * 17 16 15 44 44 H 1.09001 * 110.02574 * 240.71265 * 18 17 16 45 45 H 1.08993 * 110.03195 * 119.28465 * 18 17 16 46 46 H 1.08997 * 109.58864 * 174.42553 * 19 6 5 47 47 H 1.09002 * 109.59043 * 294.85264 * 19 6 5 48 48 H 0.97001 * 120.00448 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0464 -0.7288 -1.2442 5 6 3.5706 -0.8442 -1.1675 6 6 3.9602 -1.6607 0.0669 7 1 3.5042 -2.6489 0.0083 8 7 5.4178 -1.7972 0.1226 9 6 5.9726 -2.8387 0.7738 10 8 5.2653 -3.6625 1.3139 11 6 7.4720 -2.9795 0.8307 12 6 8.1020 -1.7336 1.4568 13 9 7.6232 -1.5744 2.7615 14 9 9.4932 -1.8787 1.4851 15 6 8.0473 -3.2279 -0.5857 16 6 7.8041 -4.7435 -0.7923 17 6 8.0772 -5.3630 0.5939 18 6 7.8659 -4.2413 1.6259 19 6 3.4655 -0.9424 1.3263 20 7 2.0226 -0.6981 1.1953 21 6 1.1536 -1.1126 2.1690 22 1 0.1388 -1.3770 1.9102 23 6 1.5767 -1.1930 3.4885 24 7 2.6876 -0.5935 3.8611 25 14 0.5695 -2.1521 4.7356 26 1 1.1031 -3.5335 4.8456 27 1 0.6521 -1.4827 6.0586 28 1 -0.8474 -2.2025 4.2940 29 1 -0.3634 0.5093 0.8926 30 1 -0.3634 0.5182 -0.8873 31 1 -0.3633 -1.0277 -0.0051 32 1 1.7685 -0.1670 -2.1360 33 1 1.6080 -1.7257 -1.2903 34 1 4.0071 0.1521 -1.0965 35 1 3.9427 -1.3408 -2.0636 36 1 5.9835 -1.1381 -0.3091 37 1 7.8402 -0.8571 0.8641 38 1 7.5057 -2.6447 -1.3304 39 1 9.1128 -3.0001 -0.6153 40 1 8.4973 -5.1437 -1.5322 41 1 6.7733 -4.9266 -1.0956 42 1 9.1029 -5.7283 0.6441 43 1 7.3799 -6.1794 0.7819 44 1 8.7892 -4.0623 2.1769 45 1 7.0663 -4.5134 2.3147 46 1 3.6525 -1.5664 2.2001 47 1 3.9886 0.0077 1.4345 48 1 2.9831 -0.6493 4.7833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132240395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:41 Heat of formation + Delta-G solvation = -134.174259 kcal Electronic energy + Delta-G solvation = -30977.632614 eV Core-core repulsion = 26702.846175 eV Total energy + Delta-G solvation = -4274.786439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -49.01685 -46.96106 -40.25335 -38.10855 -36.78549 -34.51597 -32.83599 -31.46008 -30.14581 -29.75358 -28.85324 -26.04445 -25.00878 -24.89024 -22.65318 -22.11596 -20.84427 -20.32722 -19.61193 -18.97982 -17.94073 -17.14403 -17.03808 -16.44622 -16.06690 -15.62852 -15.40238 -14.83515 -14.23962 -14.05409 -13.86068 -13.78553 -13.71278 -13.48044 -13.36272 -13.20786 -13.18420 -12.72561 -12.49930 -12.40335 -11.93568 -11.58208 -11.51115 -11.41160 -11.26025 -11.24431 -11.13207 -10.88426 -10.71087 -10.70095 -10.53946 -10.49531 -10.39544 -10.25642 -9.95223 -9.77713 -9.46961 -9.37764 -8.60355 -8.40072 -6.60075 -5.71881 -3.16981 2.74794 3.29653 3.44942 3.51134 3.52509 3.65069 3.99634 4.17294 4.31120 4.55249 4.66510 4.79728 4.92386 5.05259 5.25566 5.28425 5.31538 5.35693 5.41931 5.48225 5.52056 5.56797 5.57790 5.65642 5.79378 5.87340 5.94973 6.03111 6.07133 6.10946 6.25394 6.28588 6.32794 6.37974 6.43972 6.47531 6.60956 6.71262 6.87579 7.04309 7.12335 7.30384 7.74130 7.79125 7.89370 8.49099 8.53659 9.26346 9.90553 10.45694 11.36133 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.004383 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.375354 B = 6386.496737 C = 7305.802658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.083 0.917 8 N -0.719 5.719 9 C 0.530 3.470 10 O -0.511 6.511 11 C -0.138 4.138 12 C 0.278 3.722 13 F -0.189 7.189 14 F -0.200 7.200 15 C -0.109 4.109 16 C -0.121 4.121 17 C -0.118 4.118 18 C -0.108 4.108 19 C 0.169 3.831 20 N -0.583 5.583 21 C -0.255 4.255 22 H 0.070 0.930 23 C 0.008 3.992 24 N -0.898 5.898 25 Si 0.899 3.101 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.279 1.279 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.389 0.611 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.017 0.983 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.240 -2.614 -12.417 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.012 3.988 7 H 0.101 0.899 8 N -0.370 5.370 9 C 0.313 3.687 10 O -0.384 6.384 11 C -0.143 4.143 12 C 0.224 3.776 13 F -0.170 7.170 14 F -0.181 7.181 15 C -0.147 4.147 16 C -0.159 4.159 17 C -0.155 4.155 18 C -0.146 4.146 19 C 0.042 3.958 20 N -0.306 5.306 21 C -0.385 4.385 22 H 0.088 0.912 23 C -0.192 4.192 24 N -0.542 5.542 25 Si 0.729 3.271 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.222 0.778 37 H 0.128 0.872 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.035 0.965 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.757 -3.207 -11.791 16.957 hybrid contribution 0.011 -0.021 0.652 0.652 sum 11.767 -3.228 -11.140 16.522 Atomic orbital electron populations 1.21795 0.95972 1.01375 1.00217 1.20481 0.93093 0.93540 0.87062 0.95804 1.22039 0.94216 1.01344 0.98962 1.21682 0.97506 0.99607 0.96621 1.22045 0.77311 1.01029 0.98417 0.89908 1.46089 1.08854 1.26336 1.55685 1.19579 0.88267 0.81978 0.78898 1.90740 1.62357 1.41661 1.43688 1.22859 0.94777 0.97050 0.99595 1.21608 0.75246 0.98885 0.81845 1.93082 1.87667 1.96635 1.39642 1.92962 1.31421 1.97020 1.96730 1.22568 1.01673 0.98079 0.92335 1.22329 1.02106 0.93924 0.97524 1.22060 1.01458 0.98093 0.93919 1.22106 1.02676 0.91556 0.98238 1.21068 0.83609 0.96880 0.94291 1.44017 1.02541 1.64793 1.19266 1.19135 0.95021 1.38304 0.86016 0.91212 1.25081 0.97788 0.99240 0.97043 1.69992 1.23990 1.43419 1.16755 0.86329 0.79705 0.80077 0.80983 1.21380 1.21820 1.20385 0.91959 0.94377 0.92823 0.92678 0.92072 0.92284 0.93087 0.77816 0.87248 0.90423 0.89457 0.91028 0.91195 0.91658 0.91239 0.90773 0.88938 0.88771 0.96531 0.93674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.95 37.16 0.30 -2.24 16 2 C 0.16 3.32 3.49 -67.62 -0.24 3.09 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.08 5.37 -26.62 -0.14 -2.22 16 5 C -0.12 -1.78 5.36 -26.69 -0.14 -1.92 16 6 C 0.12 2.19 2.61 -67.81 -0.18 2.01 16 7 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 8 N -0.72 -11.01 4.81 -53.69 -0.26 -11.27 16 9 C 0.53 8.85 6.05 -10.98 -0.07 8.78 16 10 O -0.51 -11.00 15.10 5.56 0.08 -10.92 16 11 C -0.14 -1.78 0.45 -154.00 -0.07 -1.84 16 12 C 0.28 3.49 4.26 37.16 0.16 3.64 16 13 F -0.19 -3.17 16.90 2.25 0.04 -3.13 16 14 F -0.20 -2.41 15.81 2.25 0.04 -2.37 16 15 C -0.11 -1.03 5.77 -24.74 -0.14 -1.17 16 16 C -0.12 -1.20 6.61 -25.08 -0.17 -1.36 16 17 C -0.12 -1.28 6.80 -25.61 -0.17 -1.46 16 18 C -0.11 -1.43 5.48 -25.61 -0.14 -1.57 16 19 C 0.17 4.02 4.86 -3.71 -0.02 4.01 16 20 N -0.58 -14.38 2.99 -164.79 -0.49 -14.87 16 21 C -0.26 -6.98 8.58 -15.06 -0.13 -7.11 16 22 H 0.07 1.86 6.23 -52.48 -0.33 1.54 16 23 C 0.01 0.22 4.94 -17.43 -0.09 0.13 16 24 N -0.90 -26.77 11.21 55.49 0.62 -26.15 16 25 Si 0.90 22.57 29.58 -169.99 -5.03 17.54 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 H 0.06 1.26 7.63 -51.93 -0.40 0.86 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.02 7.44 -51.93 -0.39 0.63 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.39 4.50 7.83 -40.82 -0.32 4.18 16 37 H 0.11 1.05 7.49 -51.93 -0.39 0.66 16 38 H 0.08 0.63 7.81 -51.93 -0.41 0.23 16 39 H 0.09 0.71 7.43 -51.93 -0.39 0.32 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.92 7.29 -51.93 -0.38 0.54 16 45 H 0.09 1.50 6.88 -51.93 -0.36 1.14 16 46 H 0.09 2.69 6.12 -51.93 -0.32 2.37 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 373.89 15.07 5.63 5.63 Total: -1.00 -32.70 373.89 -8.44 -41.14 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.84 Total: 3.62 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.24 Total: 0.77 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.13 Total: -52.29 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.07 Total: -5.50 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.03 Total: 17.54 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.70 -8.44 -41.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132240395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.032 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds