Wall clock time and date at job start Tue Mar 31 2020 16:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.58440 * 2 1 4 4 C 1.53164 * 109.70516 * 239.63929 * 2 1 3 5 5 C 1.53043 * 109.32616 * 185.49640 * 4 2 1 6 6 C 1.53038 * 109.52489 * 61.37578 * 5 4 2 7 7 H 1.08990 * 109.50236 * 58.62206 * 6 5 4 8 8 N 1.46505 * 109.49639 * 178.69257 * 6 5 4 9 9 C 1.34779 * 119.99636 * 204.99943 * 8 6 5 10 10 O 1.21271 * 120.00115 * 359.97438 * 9 8 6 11 11 C 1.50702 * 119.99725 * 179.97438 * 9 8 6 12 12 C 1.53003 * 110.43267 * 57.45804 * 11 9 8 13 13 F 1.39897 * 109.46999 * 60.70261 * 12 11 9 14 14 F 1.39901 * 109.47143 * 180.70037 * 12 11 9 15 15 C 1.54890 * 110.48677 * 294.77509 * 11 9 8 16 16 C 1.54881 * 102.74673 * 279.26264 * 15 11 9 17 17 C 1.54266 * 104.19955 * 322.05764 * 16 15 11 18 18 C 1.53880 * 106.59449 * 23.61166 * 17 16 15 19 19 C 1.53193 * 109.31111 * 298.63687 * 6 5 4 20 20 N 1.46924 * 109.59035 * 120.28596 * 2 1 3 21 21 C 1.36935 * 120.63204 * 353.51575 * 20 2 1 22 22 H 1.08007 * 120.00042 * 29.53080 * 21 20 2 23 23 C 1.38807 * 120.00149 * 209.53727 * 21 20 2 24 24 N 1.31616 * 120.00413 * 15.61498 * 23 21 20 25 25 Si 1.86807 * 119.99951 * 195.61833 * 23 21 20 26 26 H 1.48499 * 109.47121 * 94.71863 * 25 23 21 27 27 H 1.48497 * 109.46941 * 214.71938 * 25 23 21 28 28 H 1.48501 * 109.47134 * 334.71705 * 25 23 21 29 29 H 1.09000 * 109.47223 * 299.70924 * 1 2 3 30 30 H 1.08990 * 109.47451 * 59.71565 * 1 2 3 31 31 H 1.09005 * 109.46948 * 179.71700 * 1 2 3 32 32 H 1.09006 * 109.47696 * 65.55062 * 4 2 1 33 33 H 1.08997 * 109.50527 * 305.46053 * 4 2 1 34 34 H 1.09002 * 109.46106 * 301.36118 * 5 4 2 35 35 H 1.08998 * 109.45806 * 181.38324 * 5 4 2 36 36 H 0.96994 * 119.99824 * 24.99135 * 8 6 5 37 37 H 1.09003 * 109.47329 * 300.69932 * 12 11 9 38 38 H 1.08998 * 110.75806 * 37.57858 * 15 11 9 39 39 H 1.09003 * 110.75472 * 160.95002 * 15 11 9 40 40 H 1.09003 * 110.48645 * 203.38211 * 16 15 11 41 41 H 1.09001 * 110.48649 * 80.73880 * 16 15 11 42 42 H 1.08996 * 110.03323 * 264.32834 * 17 16 15 43 43 H 1.09001 * 110.03437 * 142.89227 * 17 16 15 44 44 H 1.09001 * 110.02574 * 240.71265 * 18 17 16 45 45 H 1.08993 * 110.03195 * 119.28465 * 18 17 16 46 46 H 1.08997 * 109.58864 * 174.42553 * 19 6 5 47 47 H 1.09002 * 109.59043 * 294.85264 * 19 6 5 48 48 H 0.97001 * 120.00448 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0464 -0.7288 -1.2442 5 6 3.5706 -0.8442 -1.1675 6 6 3.9602 -1.6607 0.0669 7 1 3.5042 -2.6489 0.0083 8 7 5.4178 -1.7972 0.1226 9 6 5.9726 -2.8387 0.7738 10 8 5.2653 -3.6625 1.3139 11 6 7.4720 -2.9795 0.8307 12 6 8.1020 -1.7336 1.4568 13 9 7.6232 -1.5744 2.7615 14 9 9.4932 -1.8787 1.4851 15 6 8.0473 -3.2279 -0.5857 16 6 7.8041 -4.7435 -0.7923 17 6 8.0772 -5.3630 0.5939 18 6 7.8659 -4.2413 1.6259 19 6 3.4655 -0.9424 1.3263 20 7 2.0226 -0.6981 1.1953 21 6 1.1536 -1.1126 2.1690 22 1 0.1388 -1.3770 1.9102 23 6 1.5767 -1.1930 3.4885 24 7 2.6876 -0.5935 3.8611 25 14 0.5695 -2.1521 4.7356 26 1 1.1031 -3.5335 4.8456 27 1 0.6521 -1.4827 6.0586 28 1 -0.8474 -2.2025 4.2940 29 1 -0.3634 0.5093 0.8926 30 1 -0.3634 0.5182 -0.8873 31 1 -0.3633 -1.0277 -0.0051 32 1 1.7685 -0.1670 -2.1360 33 1 1.6080 -1.7257 -1.2903 34 1 4.0071 0.1521 -1.0965 35 1 3.9427 -1.3408 -2.0636 36 1 5.9835 -1.1381 -0.3091 37 1 7.8402 -0.8571 0.8641 38 1 7.5057 -2.6447 -1.3304 39 1 9.1128 -3.0001 -0.6153 40 1 8.4973 -5.1437 -1.5322 41 1 6.7733 -4.9266 -1.0956 42 1 9.1029 -5.7283 0.6441 43 1 7.3799 -6.1794 0.7819 44 1 8.7892 -4.0623 2.1769 45 1 7.0663 -4.5134 2.3147 46 1 3.6525 -1.5664 2.2001 47 1 3.9886 0.0077 1.4345 48 1 2.9831 -0.6493 4.7833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132240395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:40 Heat of formation + Delta-G solvation = -155.093940 kcal Electronic energy + Delta-G solvation = -30978.539760 eV Core-core repulsion = 26702.846175 eV Total energy + Delta-G solvation = -4275.693585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -50.09126 -48.06591 -41.54010 -39.59221 -38.02489 -36.09243 -34.68209 -32.76520 -31.79387 -31.18135 -29.76683 -27.74665 -26.77209 -25.88215 -24.21472 -23.52074 -22.09963 -21.49323 -21.17624 -20.29670 -19.06554 -18.34382 -18.19671 -18.10735 -17.39591 -17.09524 -16.83058 -16.14787 -15.80092 -15.61590 -15.34533 -15.08714 -14.99835 -14.89793 -14.55253 -14.48463 -14.39264 -14.14791 -14.06819 -13.53351 -13.46669 -13.09406 -12.76551 -12.75159 -12.59341 -12.56004 -12.31787 -12.27906 -12.22431 -12.12443 -12.07959 -11.96423 -11.69620 -11.65092 -11.46307 -11.34298 -11.14638 -10.82096 -10.55721 -10.12516 -8.62706 -7.86302 -5.32295 1.37769 1.42847 1.45738 1.48971 2.01686 2.48602 2.61963 3.07410 3.15866 3.26733 3.32965 3.63985 3.75618 3.82615 3.93434 3.99385 4.10421 4.15267 4.26555 4.36906 4.39330 4.40668 4.51525 4.61713 4.69143 4.71746 4.78349 4.82323 4.89930 4.99200 5.00558 5.01504 5.08203 5.15378 5.19080 5.19804 5.30746 5.33790 5.40373 5.45607 5.55260 5.61690 5.69989 5.80257 6.39677 6.53435 7.14801 7.23998 7.90056 8.38426 9.18256 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.004383 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.375354 B = 6386.496737 C = 7305.802658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.133 3.867 7 H 0.051 0.949 8 N -0.705 5.705 9 C 0.526 3.474 10 O -0.569 6.569 11 C -0.134 4.134 12 C 0.273 3.727 13 F -0.220 7.220 14 F -0.193 7.193 15 C -0.098 4.098 16 C -0.120 4.120 17 C -0.117 4.117 18 C -0.113 4.113 19 C 0.180 3.820 20 N -0.603 5.603 21 C -0.249 4.249 22 H 0.075 0.925 23 C -0.053 4.053 24 N -0.931 5.931 25 Si 0.952 3.048 26 H -0.300 1.300 27 H -0.294 1.294 28 H -0.259 1.259 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.412 0.588 37 H 0.148 0.852 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.049 0.951 46 H 0.038 0.962 47 H -0.002 1.002 48 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.381 -1.861 -16.374 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.026 3.974 7 H 0.069 0.931 8 N -0.356 5.356 9 C 0.312 3.688 10 O -0.447 6.447 11 C -0.139 4.139 12 C 0.219 3.781 13 F -0.202 7.202 14 F -0.174 7.174 15 C -0.136 4.136 16 C -0.157 4.157 17 C -0.154 4.154 18 C -0.151 4.151 19 C 0.052 3.948 20 N -0.327 5.327 21 C -0.379 4.379 22 H 0.092 0.908 23 C -0.248 4.248 24 N -0.578 5.578 25 Si 0.782 3.218 26 H -0.228 1.228 27 H -0.221 1.221 28 H -0.183 1.183 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.249 0.751 37 H 0.165 0.835 38 H 0.117 0.883 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.069 0.931 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.016 0.984 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.904 -2.419 -15.810 20.551 hybrid contribution -0.357 -0.247 1.871 1.921 sum 12.547 -2.666 -13.939 18.943 Atomic orbital electron populations 1.21733 0.94891 1.01076 1.01015 1.20816 0.94212 0.93444 0.86751 0.95991 1.21944 0.94752 1.00815 0.98230 1.21657 0.96959 1.00077 0.95763 1.21531 0.78937 0.99188 0.97696 0.93060 1.45863 1.07849 1.26596 1.55331 1.20292 0.89904 0.81177 0.77455 1.90723 1.64188 1.43876 1.45900 1.22850 0.91734 0.97013 1.02258 1.21998 0.75416 1.00002 0.80649 1.93029 1.88187 1.96799 1.42151 1.92971 1.30739 1.97072 1.96602 1.22678 1.03207 0.97900 0.89781 1.22350 1.01812 0.94397 0.97182 1.22078 1.02486 0.96791 0.94060 1.22116 1.01334 0.93104 0.98554 1.20752 0.83779 0.95254 0.94965 1.44321 1.02478 1.65724 1.20200 1.19468 0.95471 1.36370 0.86601 0.90789 1.25775 0.99094 1.00971 0.98988 1.70151 1.25800 1.45608 1.16227 0.85460 0.79430 0.77943 0.79013 1.22775 1.22068 1.18324 0.94470 0.90226 0.93644 0.88482 0.93022 0.90595 0.89156 0.75058 0.83542 0.88263 0.86859 0.87928 0.93128 0.89182 0.92878 0.90034 0.93211 0.94373 0.98361 0.94792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 7.95 71.98 0.57 -4.04 16 2 C 0.15 5.94 3.49 44.96 0.16 6.10 16 3 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.12 -3.49 5.37 30.66 0.16 -3.32 16 5 C -0.11 -2.89 5.36 30.62 0.16 -2.72 16 6 C 0.13 4.93 2.61 45.07 0.12 5.04 16 7 H 0.05 2.26 7.58 -2.39 -0.02 2.24 16 8 N -0.70 -20.90 4.81 -442.17 -2.13 -23.03 16 9 C 0.53 17.90 6.05 87.66 0.53 18.43 16 10 O -0.57 -26.26 15.10 -3.00 -0.05 -26.31 16 11 C -0.13 -3.32 0.45 -51.85 -0.02 -3.34 16 12 C 0.27 6.45 4.26 71.98 0.31 6.76 16 13 F -0.22 -7.60 16.90 44.97 0.76 -6.84 16 14 F -0.19 -4.17 15.81 44.97 0.71 -3.46 16 15 C -0.10 -1.50 5.77 31.88 0.18 -1.32 16 16 C -0.12 -2.06 6.61 31.67 0.21 -1.85 16 17 C -0.12 -2.45 6.80 31.32 0.21 -2.24 16 18 C -0.11 -3.07 5.48 31.32 0.17 -2.90 16 19 C 0.18 8.91 4.86 86.36 0.42 9.33 16 20 N -0.60 -30.36 2.99 -675.29 -2.02 -32.38 16 21 C -0.25 -14.01 8.58 84.03 0.72 -13.29 16 22 H 0.07 4.02 6.23 -2.91 -0.02 4.01 16 23 C -0.05 -3.15 4.94 84.86 0.42 -2.73 16 24 N -0.93 -58.81 11.21 21.65 0.24 -58.57 16 25 Si 0.95 48.43 29.58 68.60 2.03 50.46 16 26 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 27 H -0.29 -14.91 7.11 99.48 0.71 -14.21 16 28 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 29 H 0.04 1.48 7.63 -2.39 -0.02 1.46 16 30 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 31 H 0.04 1.66 7.44 -2.38 -0.02 1.65 16 32 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.41 8.27 7.83 -92.71 -0.73 7.54 16 37 H 0.15 2.36 7.49 -2.39 -0.02 2.34 16 38 H 0.10 1.13 7.81 -2.39 -0.02 1.11 16 39 H 0.11 1.25 7.43 -2.39 -0.02 1.23 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 2.03 7.29 -2.39 -0.02 2.01 16 45 H 0.05 1.77 6.88 -2.39 -0.02 1.75 16 46 H 0.04 2.32 6.12 -2.39 -0.01 2.31 16 47 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.24 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -79.78 373.89 4.11 -75.67 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.24 Total: 16.55 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 4.33 Total: 7.91 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -3.90 Total: -113.98 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.31 kcal Atomic # 9 Polarization: -11.77 SS G_CDS: 1.47 Total: -10.29 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -79.78 4.11 -75.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132240395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.424 kcal (2) G-P(sol) polarization free energy of solvation -79.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds