Wall clock time and date at job start Tue Mar 31 2020 17:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46085 * 2 1 4 4 C 1.53051 * 109.45694 * 240.03010 * 2 1 3 5 5 C 1.53189 * 109.30931 * 178.63029 * 4 2 1 6 6 N 1.46920 * 108.77781 * 54.63561 * 5 4 2 7 7 C 1.34779 * 120.62943 * 126.36963 * 6 5 4 8 8 O 1.21282 * 119.99927 * 180.02562 * 7 6 5 9 9 C 1.50699 * 120.00033 * 359.97438 * 7 6 5 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 6 11 11 C 1.53780 * 113.61185 * 272.49634 * 10 9 7 12 12 C 1.53786 * 87.07859 * 220.01881 * 11 10 9 13 13 F 1.39895 * 113.61650 * 270.88688 * 12 11 10 14 14 F 1.39902 * 113.68737 * 139.99170 * 12 11 10 15 15 C 1.53781 * 87.08126 * 25.43651 * 12 11 10 16 16 C 1.46927 * 118.74133 * 306.64302 * 6 5 4 17 17 C 1.52761 * 109.00797 * 53.30510 * 16 6 5 18 18 H 1.08999 * 109.35641 * 65.50337 * 17 16 6 19 19 C 1.52995 * 109.59210 * 185.53854 * 17 16 6 20 20 N 1.46498 * 109.47342 * 294.98626 * 19 17 16 21 21 C 1.36933 * 120.00493 * 180.02562 * 20 19 17 22 22 H 1.08008 * 119.99657 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00634 * 179.97438 * 21 20 19 24 24 N 1.31628 * 119.99723 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00383 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47101 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46927 * 120.00088 * 25 23 21 28 28 H 1.48496 * 109.47176 * 240.00003 * 25 23 21 29 29 H 1.08997 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46867 * 299.96792 * 1 2 3 31 31 H 1.09004 * 109.47529 * 59.96790 * 1 2 3 32 32 H 1.09003 * 109.49555 * 58.67583 * 4 2 1 33 33 H 1.09001 * 109.52187 * 298.59435 * 4 2 1 34 34 H 1.09003 * 109.58780 * 294.84454 * 5 4 2 35 35 H 1.09005 * 109.58560 * 174.42813 * 5 4 2 36 36 H 1.08993 * 109.47512 * 60.00410 * 9 7 6 37 37 H 1.09000 * 109.47247 * 300.00119 * 9 7 6 38 38 H 1.09003 * 112.85166 * 43.80698 * 10 9 7 39 39 H 1.08996 * 113.61507 * 334.56463 * 11 10 9 40 40 H 1.08996 * 113.61313 * 105.47850 * 11 10 9 41 41 H 1.09004 * 113.61172 * 220.02010 * 15 12 11 42 42 H 1.08995 * 113.69439 * 89.12348 * 15 12 11 43 43 H 1.08993 * 109.58980 * 173.14441 * 16 6 5 44 44 H 1.09008 * 109.58351 * 293.56945 * 16 6 5 45 45 H 1.09005 * 109.47078 * 54.98455 * 19 17 16 46 46 H 1.08996 * 109.47388 * 174.98551 * 19 17 16 47 47 H 0.97005 * 120.00026 * 359.97438 * 20 19 17 48 48 H 0.96998 * 119.99659 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2501 5 6 3.5713 -0.6891 -1.2641 6 7 4.0675 -1.2494 0.0001 7 6 4.9609 -2.2586 0.0002 8 8 5.3625 -2.7129 1.0505 9 6 5.4598 -2.8233 -1.3049 10 6 6.4565 -3.9500 -1.0252 11 6 7.9048 -3.4624 -0.8528 12 6 8.3345 -4.7024 -1.6546 13 9 8.5681 -5.8301 -0.8605 14 9 9.3691 -4.4536 -2.5629 15 6 6.9355 -4.6774 -2.2927 16 6 3.5668 -0.6929 1.2644 17 6 2.0395 -0.7209 1.2501 18 1 1.6973 -1.7557 1.2383 19 6 1.5019 -0.0195 2.4989 20 7 1.8906 -0.7779 3.6905 21 6 1.5185 -0.3389 4.9331 22 1 0.9388 0.5667 5.0347 23 6 1.8863 -1.0577 6.0622 24 7 2.5924 -2.1617 5.9383 25 14 1.3793 -0.4585 7.7573 26 1 0.5977 0.7972 7.6251 27 1 0.5456 -1.4938 8.4194 28 1 2.5922 -0.2022 8.5749 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5133 0.8902 31 1 -0.3634 0.5143 -0.8897 32 1 1.6573 -0.2207 -2.1399 33 1 1.6975 -1.7557 -1.2389 34 1 3.9145 0.3404 -1.3672 35 1 3.9416 -1.2850 -2.0983 36 1 5.9515 -2.0365 -1.8770 37 1 4.6187 -3.2162 -1.8760 38 1 6.1239 -4.6230 -0.2349 39 1 8.1119 -2.5206 -1.3608 40 1 8.2481 -3.4711 0.1817 41 1 6.4962 -5.6668 -2.4206 42 1 6.8762 -4.0681 -3.1945 43 1 3.9341 -1.2914 2.0980 44 1 3.9097 0.3363 1.3717 45 1 1.9167 0.9869 2.5574 46 1 0.4148 0.0383 2.4436 47 1 2.4109 -1.5914 3.5993 48 1 2.8491 -2.6642 6.7273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132938497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:01 Heat of formation + Delta-G solvation = -116.106530 kcal Electronic energy + Delta-G solvation = -29104.011807 eV Core-core repulsion = 24830.008843 eV Total energy + Delta-G solvation = -4274.002964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.00186 -47.33953 -40.39877 -38.69621 -37.44978 -34.99583 -33.69820 -31.96568 -30.66622 -29.67840 -28.03130 -26.54137 -25.62978 -23.91033 -23.23433 -22.77344 -21.24216 -20.33469 -19.85898 -18.96922 -17.59015 -17.25234 -16.89749 -16.77374 -16.43996 -15.95902 -15.49411 -14.89349 -14.84734 -14.42407 -14.21584 -13.95101 -13.76087 -13.72334 -13.59040 -13.53297 -13.37032 -13.06709 -12.86990 -12.72922 -12.61282 -12.30978 -11.92141 -11.77335 -11.66055 -11.45591 -11.34513 -11.14756 -10.99729 -10.87509 -10.80134 -10.66200 -10.61070 -10.27004 -10.16591 -9.93498 -9.64559 -9.53294 -8.83835 -8.49874 -6.86550 -5.70271 -2.99939 2.71427 3.01214 3.24748 3.46579 3.51480 3.54337 3.54368 3.98128 4.06058 4.09564 4.53470 4.59738 4.65641 4.80824 4.86300 4.88466 5.03900 5.08525 5.12968 5.17223 5.19651 5.26339 5.36235 5.40039 5.50275 5.57387 5.61074 5.64693 5.66224 5.71362 5.79389 5.88676 5.94680 6.01128 6.01789 6.17713 6.23140 6.31723 6.43970 6.57407 6.64734 6.81424 6.89555 7.50466 7.74434 8.28964 8.47458 9.58499 10.16628 10.50615 11.52042 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.011732 B = 0.002910 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.147939 B = 9618.324960 C =11662.762651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.070 0.930 4 C -0.129 4.129 5 C 0.106 3.894 6 N -0.612 5.612 7 C 0.508 3.492 8 O -0.527 6.527 9 C -0.127 4.127 10 C -0.089 4.089 11 C -0.159 4.159 12 C 0.252 3.748 13 F -0.179 7.179 14 F -0.195 7.195 15 C -0.162 4.162 16 C 0.119 3.881 17 C -0.101 4.101 18 H 0.073 0.927 19 C 0.159 3.841 20 N -0.733 5.733 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.929 5.929 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.018 0.982 46 H 0.027 0.973 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.269 0.303 -24.337 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.168 4.168 5 C -0.017 4.017 6 N -0.346 5.346 7 C 0.295 3.705 8 O -0.403 6.403 9 C -0.167 4.167 10 C -0.107 4.107 11 C -0.197 4.197 12 C 0.216 3.784 13 F -0.160 7.160 14 F -0.175 7.175 15 C -0.200 4.200 16 C -0.002 4.002 17 C -0.121 4.121 18 H 0.091 0.909 19 C 0.031 3.969 20 N -0.378 5.378 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.130 0.870 43 H 0.122 0.878 44 H 0.082 0.918 45 H 0.035 0.965 46 H 0.044 0.956 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.465 0.132 -23.631 24.255 hybrid contribution 0.011 -0.046 0.888 0.889 sum 5.476 0.086 -22.743 23.394 Atomic orbital electron populations 1.21882 0.94972 1.01958 1.01712 1.21089 0.95971 0.99343 0.93945 0.91113 1.21990 0.94650 1.01629 0.98488 1.21740 0.94803 0.99208 0.85938 1.48203 1.43183 1.35579 1.07657 1.20538 0.79124 0.79498 0.91294 1.90783 1.57076 1.59027 1.33374 1.21628 1.00143 0.98455 0.96456 1.22194 0.93584 0.97390 0.97578 1.24171 0.96034 0.96621 1.02835 1.22108 0.85119 0.85856 0.85364 1.93029 1.95379 1.53384 1.74164 1.92999 1.62562 1.94073 1.67900 1.24185 0.92265 1.03852 0.99685 1.21632 0.93640 0.99133 0.85813 1.21629 0.94627 1.00702 0.95149 0.90864 1.20720 0.96814 0.94020 0.85382 1.42426 1.65411 1.29110 1.00833 1.19234 1.27879 1.06300 0.83792 0.91227 1.24757 1.00859 0.97525 0.97808 1.69688 1.42453 1.17190 1.28393 0.86145 0.77634 0.77697 0.84873 1.20621 1.21916 1.21885 0.92785 0.91616 0.93249 0.90898 0.91467 0.91388 0.90092 0.88645 0.88267 0.86546 0.87240 0.88289 0.88686 0.86980 0.87813 0.91802 0.96451 0.95553 0.78129 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.82 37.16 0.33 -1.33 16 2 C -0.08 -0.97 2.23 -90.57 -0.20 -1.18 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.15 5.36 -26.61 -0.14 -1.29 16 5 C 0.11 0.90 6.34 -3.72 -0.02 0.88 16 6 N -0.61 -7.80 2.98 -173.03 -0.52 -8.31 16 7 C 0.51 6.87 7.70 -10.99 -0.08 6.78 16 8 O -0.53 -9.81 15.17 5.56 0.08 -9.72 16 9 C -0.13 -1.04 3.88 -27.88 -0.11 -1.15 16 10 C -0.09 -0.81 3.13 -89.80 -0.28 -1.09 16 11 C -0.16 -1.48 7.42 -25.92 -0.19 -1.67 16 12 C 0.25 2.46 3.27 -25.92 -0.08 2.38 16 13 F -0.18 -2.16 17.38 2.25 0.04 -2.12 16 14 F -0.19 -2.07 17.41 2.25 0.04 -2.04 16 15 C -0.16 -1.14 7.43 -25.92 -0.19 -1.33 16 16 C 0.12 1.94 5.49 -3.93 -0.02 1.92 16 17 C -0.10 -1.60 1.90 -90.72 -0.17 -1.77 16 18 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 19 C 0.16 3.13 5.41 -4.05 -0.02 3.10 16 20 N -0.73 -18.79 5.38 -59.91 -0.32 -19.11 16 21 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 22 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 25 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.82 6.29 -51.93 -0.33 0.50 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.46 5.93 -51.93 -0.31 0.15 16 36 H 0.10 0.55 7.64 -51.93 -0.40 0.16 16 37 H 0.10 0.61 7.69 -51.93 -0.40 0.22 16 38 H 0.12 1.34 7.67 -51.93 -0.40 0.94 16 39 H 0.11 0.82 7.90 -51.93 -0.41 0.41 16 40 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.11 0.54 8.10 -51.93 -0.42 0.12 16 43 H 0.10 2.15 6.20 -51.93 -0.32 1.83 16 44 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.03 0.52 6.14 -51.93 -0.32 0.20 16 47 H 0.38 10.59 6.89 -40.82 -0.28 10.30 16 48 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -34.28 382.29 -8.44 -42.72 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.78 Total: 6.48 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.45 Total: -3.23 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.11 Total: -55.65 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.08 Total: -4.15 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.28 -8.44 -42.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132938497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.389 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds