Wall clock time and date at job start Tue Mar 31 2020 17:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46085 * 2 1 4 4 C 1.53051 * 109.45694 * 240.03010 * 2 1 3 5 5 C 1.53189 * 109.30931 * 178.63029 * 4 2 1 6 6 N 1.46920 * 108.77781 * 54.63561 * 5 4 2 7 7 C 1.34779 * 120.62943 * 126.36963 * 6 5 4 8 8 O 1.21282 * 119.99927 * 180.02562 * 7 6 5 9 9 C 1.50699 * 120.00033 * 359.97438 * 7 6 5 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 6 11 11 C 1.53780 * 113.61185 * 272.49634 * 10 9 7 12 12 C 1.53786 * 87.07859 * 220.01881 * 11 10 9 13 13 F 1.39895 * 113.61650 * 270.88688 * 12 11 10 14 14 F 1.39902 * 113.68737 * 139.99170 * 12 11 10 15 15 C 1.53781 * 87.08126 * 25.43651 * 12 11 10 16 16 C 1.46927 * 118.74133 * 306.64302 * 6 5 4 17 17 C 1.52761 * 109.00797 * 53.30510 * 16 6 5 18 18 H 1.08999 * 109.35641 * 65.50337 * 17 16 6 19 19 C 1.52995 * 109.59210 * 185.53854 * 17 16 6 20 20 N 1.46498 * 109.47342 * 294.98626 * 19 17 16 21 21 C 1.36933 * 120.00493 * 180.02562 * 20 19 17 22 22 H 1.08008 * 119.99657 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00634 * 179.97438 * 21 20 19 24 24 N 1.31628 * 119.99723 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00383 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47101 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46927 * 120.00088 * 25 23 21 28 28 H 1.48496 * 109.47176 * 240.00003 * 25 23 21 29 29 H 1.08997 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46867 * 299.96792 * 1 2 3 31 31 H 1.09004 * 109.47529 * 59.96790 * 1 2 3 32 32 H 1.09003 * 109.49555 * 58.67583 * 4 2 1 33 33 H 1.09001 * 109.52187 * 298.59435 * 4 2 1 34 34 H 1.09003 * 109.58780 * 294.84454 * 5 4 2 35 35 H 1.09005 * 109.58560 * 174.42813 * 5 4 2 36 36 H 1.08993 * 109.47512 * 60.00410 * 9 7 6 37 37 H 1.09000 * 109.47247 * 300.00119 * 9 7 6 38 38 H 1.09003 * 112.85166 * 43.80698 * 10 9 7 39 39 H 1.08996 * 113.61507 * 334.56463 * 11 10 9 40 40 H 1.08996 * 113.61313 * 105.47850 * 11 10 9 41 41 H 1.09004 * 113.61172 * 220.02010 * 15 12 11 42 42 H 1.08995 * 113.69439 * 89.12348 * 15 12 11 43 43 H 1.08993 * 109.58980 * 173.14441 * 16 6 5 44 44 H 1.09008 * 109.58351 * 293.56945 * 16 6 5 45 45 H 1.09005 * 109.47078 * 54.98455 * 19 17 16 46 46 H 1.08996 * 109.47388 * 174.98551 * 19 17 16 47 47 H 0.97005 * 120.00026 * 359.97438 * 20 19 17 48 48 H 0.96998 * 119.99659 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2501 5 6 3.5713 -0.6891 -1.2641 6 7 4.0675 -1.2494 0.0001 7 6 4.9609 -2.2586 0.0002 8 8 5.3625 -2.7129 1.0505 9 6 5.4598 -2.8233 -1.3049 10 6 6.4565 -3.9500 -1.0252 11 6 7.9048 -3.4624 -0.8528 12 6 8.3345 -4.7024 -1.6546 13 9 8.5681 -5.8301 -0.8605 14 9 9.3691 -4.4536 -2.5629 15 6 6.9355 -4.6774 -2.2927 16 6 3.5668 -0.6929 1.2644 17 6 2.0395 -0.7209 1.2501 18 1 1.6973 -1.7557 1.2383 19 6 1.5019 -0.0195 2.4989 20 7 1.8906 -0.7779 3.6905 21 6 1.5185 -0.3389 4.9331 22 1 0.9388 0.5667 5.0347 23 6 1.8863 -1.0577 6.0622 24 7 2.5924 -2.1617 5.9383 25 14 1.3793 -0.4585 7.7573 26 1 0.5977 0.7972 7.6251 27 1 0.5456 -1.4938 8.4194 28 1 2.5922 -0.2022 8.5749 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5133 0.8902 31 1 -0.3634 0.5143 -0.8897 32 1 1.6573 -0.2207 -2.1399 33 1 1.6975 -1.7557 -1.2389 34 1 3.9145 0.3404 -1.3672 35 1 3.9416 -1.2850 -2.0983 36 1 5.9515 -2.0365 -1.8770 37 1 4.6187 -3.2162 -1.8760 38 1 6.1239 -4.6230 -0.2349 39 1 8.1119 -2.5206 -1.3608 40 1 8.2481 -3.4711 0.1817 41 1 6.4962 -5.6668 -2.4206 42 1 6.8762 -4.0681 -3.1945 43 1 3.9341 -1.2914 2.0980 44 1 3.9097 0.3363 1.3717 45 1 1.9167 0.9869 2.5574 46 1 0.4148 0.0383 2.4436 47 1 2.4109 -1.5914 3.5993 48 1 2.8491 -2.6642 6.7273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132938497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:00 Heat of formation + Delta-G solvation = -138.015741 kcal Electronic energy + Delta-G solvation = -29104.961861 eV Core-core repulsion = 24830.008843 eV Total energy + Delta-G solvation = -4274.953018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.81413 -48.16481 -41.41313 -39.62439 -38.43248 -36.60108 -35.04584 -33.52536 -31.90489 -30.90389 -29.05176 -27.26215 -27.15913 -25.15717 -24.59991 -23.69115 -22.55279 -21.28183 -20.82586 -19.91689 -19.15199 -18.39530 -18.02293 -17.53630 -17.24920 -16.98128 -16.75787 -16.45621 -15.83836 -15.59298 -15.46582 -15.09626 -15.04024 -14.86023 -14.52806 -14.44241 -14.37259 -14.15603 -14.09968 -13.93951 -13.46872 -13.29017 -13.07766 -13.04597 -12.81137 -12.63551 -12.60308 -12.26369 -12.13570 -12.09692 -11.93465 -11.90988 -11.81227 -11.74185 -11.36613 -11.27318 -11.13462 -10.97408 -10.65532 -9.57218 -9.01040 -7.96073 -5.26329 1.43675 1.45764 1.55833 1.71218 2.05045 2.53901 2.54305 2.86229 3.24996 3.36987 3.38512 3.39023 3.65702 3.78559 3.85508 3.91198 4.11544 4.14653 4.24717 4.32726 4.39060 4.47988 4.51649 4.57251 4.61408 4.63831 4.69388 4.73171 4.78633 4.82125 4.84811 4.88152 4.92281 4.99275 5.01837 5.11824 5.16308 5.26574 5.31840 5.32563 5.46715 5.48577 5.60630 5.61801 6.24737 6.53937 7.28742 7.30033 8.07270 8.28923 9.27552 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.011732 B = 0.002910 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.147939 B = 9618.324960 C =11662.762651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.081 0.919 4 C -0.124 4.124 5 C 0.099 3.901 6 N -0.610 5.610 7 C 0.496 3.504 8 O -0.595 6.595 9 C -0.112 4.112 10 C -0.094 4.094 11 C -0.162 4.162 12 C 0.235 3.765 13 F -0.200 7.200 14 F -0.199 7.199 15 C -0.134 4.134 16 C 0.127 3.873 17 C -0.087 4.087 18 H 0.048 0.952 19 C 0.156 3.844 20 N -0.748 5.748 21 C -0.243 4.243 22 H 0.079 0.921 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.976 3.024 26 H -0.262 1.262 27 H -0.293 1.293 28 H -0.295 1.295 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.079 0.921 39 H 0.135 0.865 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.150 0.850 43 H 0.046 0.954 44 H 0.065 0.935 45 H 0.021 0.979 46 H 0.032 0.968 47 H 0.370 0.630 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 2.214 -28.469 28.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.100 0.900 4 C -0.162 4.162 5 C -0.022 4.022 6 N -0.343 5.343 7 C 0.286 3.714 8 O -0.475 6.475 9 C -0.151 4.151 10 C -0.113 4.113 11 C -0.199 4.199 12 C 0.199 3.801 13 F -0.181 7.181 14 F -0.180 7.180 15 C -0.172 4.172 16 C 0.003 3.997 17 C -0.107 4.107 18 H 0.067 0.933 19 C 0.029 3.971 20 N -0.391 5.391 21 C -0.375 4.375 22 H 0.097 0.903 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.805 3.195 26 H -0.186 1.186 27 H -0.220 1.220 28 H -0.222 1.222 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.141 0.859 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.098 0.902 39 H 0.154 0.846 40 H 0.087 0.913 41 H 0.122 0.878 42 H 0.168 0.832 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.039 0.961 46 H 0.050 0.950 47 H 0.201 0.799 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.345 2.100 -27.838 28.253 hybrid contribution 0.344 -0.583 2.160 2.263 sum 4.689 1.517 -25.678 26.147 Atomic orbital electron populations 1.21860 0.94570 1.01617 1.02260 1.21098 0.96249 0.99602 0.92886 0.90037 1.21994 0.94865 1.01267 0.98029 1.22183 0.94555 1.00895 0.84559 1.48322 1.42763 1.35305 1.07893 1.21659 0.78332 0.78843 0.92565 1.90767 1.59390 1.61061 1.36322 1.21704 1.01072 0.98838 0.93510 1.22072 0.93550 0.97662 0.98044 1.24271 0.96405 0.97791 1.01476 1.22545 0.86454 0.85327 0.85764 1.92984 1.95615 1.54518 1.74985 1.92985 1.63075 1.94052 1.67890 1.24150 0.88897 1.04674 0.99476 1.21209 0.93918 0.98064 0.86483 1.21467 0.94140 0.99377 0.95696 0.93344 1.20937 0.97110 0.93821 0.85208 1.42697 1.65200 1.29113 1.02079 1.19698 1.26694 1.06087 0.85033 0.90327 1.25662 1.01654 0.97987 1.01957 1.69881 1.44506 1.18878 1.29037 0.85030 0.77077 0.77718 0.79683 1.18569 1.22007 1.22195 0.93590 0.93578 0.90151 0.87038 0.92099 0.89560 0.85865 0.84561 0.84833 0.90212 0.84645 0.91288 0.87839 0.83207 0.93570 0.91716 0.96105 0.95001 0.79880 0.94177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.82 71.98 0.63 -2.29 16 2 C -0.08 -1.64 2.23 -10.76 -0.02 -1.66 16 3 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.12 -1.63 5.36 30.67 0.16 -1.46 16 5 C 0.10 1.20 6.34 86.36 0.55 1.75 16 6 N -0.61 -14.83 2.98 -819.74 -2.44 -17.27 16 7 C 0.50 13.27 7.70 87.66 0.67 13.95 16 8 O -0.59 -23.96 15.17 -3.04 -0.05 -24.01 16 9 C -0.11 -1.46 3.88 29.85 0.12 -1.34 16 10 C -0.09 -1.61 3.13 -10.26 -0.03 -1.65 16 11 C -0.16 -2.95 7.42 31.12 0.23 -2.72 16 12 C 0.24 4.40 3.27 31.12 0.10 4.50 16 13 F -0.20 -5.03 17.38 44.97 0.78 -4.25 16 14 F -0.20 -3.95 17.41 44.97 0.78 -3.17 16 15 C -0.13 -1.48 7.43 31.12 0.23 -1.25 16 16 C 0.13 4.29 5.49 86.22 0.47 4.77 16 17 C -0.09 -2.79 1.90 -10.86 -0.02 -2.81 16 18 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 19 C 0.16 6.31 5.41 86.38 0.47 6.77 16 20 N -0.75 -40.28 5.38 -343.46 -1.85 -42.13 16 21 C -0.24 -14.19 9.99 84.03 0.84 -13.36 16 22 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 23 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 24 N -0.97 -63.57 13.06 21.65 0.28 -63.28 16 25 Si 0.98 48.12 29.55 68.60 2.03 50.14 16 26 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 28 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 1.09 6.29 -2.39 -0.02 1.08 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.12 0.53 5.93 -2.38 -0.01 0.52 16 36 H 0.14 0.74 7.64 -2.39 -0.02 0.72 16 37 H 0.13 0.90 7.69 -2.39 -0.02 0.88 16 38 H 0.08 1.98 7.67 -2.39 -0.02 1.96 16 39 H 0.14 1.70 7.90 -2.39 -0.02 1.68 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.15 0.57 8.10 -2.39 -0.02 0.55 16 43 H 0.05 2.11 6.20 -2.39 -0.01 2.09 16 44 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 45 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.03 1.28 6.14 -2.39 -0.01 1.26 16 47 H 0.37 21.90 6.89 -92.70 -0.64 21.26 16 48 H 0.25 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -83.88 382.29 4.74 -79.15 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.32 Total: 26.02 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 4.87 Total: -1.20 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -4.01 Total: -122.68 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 9 Polarization: -8.98 SS G_CDS: 1.56 Total: -7.41 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.14 kcal Total: -83.88 4.74 -79.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132938497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.870 kcal (2) G-P(sol) polarization free energy of solvation -83.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds