Wall clock time and date at job start Tue Mar 31 2020 17:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46387 * 2 1 4 4 C 1.53044 * 109.45900 * 119.97904 * 2 1 3 5 5 C 1.53198 * 109.30961 * 181.37490 * 4 2 1 6 6 N 1.46924 * 108.77450 * 305.35816 * 5 4 2 7 7 C 1.34775 * 120.63313 * 233.59205 * 6 5 4 8 8 O 1.21284 * 120.00332 * 175.03573 * 7 6 5 9 9 C 1.50699 * 119.99845 * 355.03347 * 7 6 5 10 10 C 1.52999 * 112.84931 * 288.31436 * 9 7 6 11 11 F 1.39904 * 109.47215 * 64.90115 * 10 9 7 12 12 F 1.39906 * 109.47304 * 184.89874 * 10 9 7 13 13 C 1.53784 * 113.61595 * 157.00779 * 9 7 6 14 14 C 1.53779 * 87.08062 * 220.01849 * 13 9 7 15 15 C 1.53772 * 87.08260 * 25.43255 * 14 13 9 16 16 C 1.46924 * 118.73775 * 53.61010 * 6 5 4 17 17 C 1.53047 * 109.44938 * 240.03509 * 2 1 3 18 18 H 1.08998 * 109.49393 * 298.57377 * 17 2 1 19 19 C 1.52997 * 109.49507 * 58.67198 * 17 2 1 20 20 N 1.46504 * 109.46899 * 184.99963 * 19 17 2 21 21 C 1.36944 * 119.99769 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99913 * 0.02562 * 21 20 19 23 23 C 1.38806 * 119.99695 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00057 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99804 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46718 * 90.00251 * 25 23 21 27 27 H 1.48496 * 109.47105 * 210.00368 * 25 23 21 28 28 H 1.48495 * 109.47171 * 330.00703 * 25 23 21 29 29 H 1.08994 * 109.47381 * 300.02111 * 1 2 3 30 30 H 1.09002 * 109.47150 * 60.02416 * 1 2 3 31 31 H 1.09005 * 109.46788 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.49273 * 301.31959 * 4 2 1 33 33 H 1.08991 * 109.50339 * 61.41848 * 4 2 1 34 34 H 1.08992 * 109.58897 * 65.14897 * 5 4 2 35 35 H 1.09000 * 109.57967 * 185.57907 * 5 4 2 36 36 H 1.08999 * 109.47516 * 304.89865 * 10 9 7 37 37 H 1.09001 * 113.61574 * 334.57206 * 13 9 7 38 38 H 1.09002 * 113.61228 * 105.47223 * 13 9 7 39 39 H 1.09000 * 113.61392 * 270.88323 * 14 13 9 40 40 H 1.09004 * 113.61495 * 139.98330 * 14 13 9 41 41 H 1.09004 * 113.61444 * 220.01641 * 15 14 13 42 42 H 1.09004 * 113.61813 * 89.11594 * 15 14 13 43 43 H 1.09002 * 109.58551 * 186.60224 * 16 6 5 44 44 H 1.08997 * 109.58482 * 66.17943 * 16 6 5 45 45 H 1.08999 * 109.47164 * 304.99954 * 19 17 2 46 46 H 1.09001 * 109.47482 * 64.99768 * 19 17 2 47 47 H 0.96993 * 119.99947 * 359.97438 * 20 19 17 48 48 H 0.97008 * 119.99851 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7211 1.2500 5 6 3.5714 -0.6891 1.2640 6 7 4.0676 -1.2493 -0.0004 7 6 4.9616 -2.2579 -0.0006 8 8 5.2956 -2.7721 -1.0471 9 6 5.5463 -2.7468 1.2995 10 6 6.5346 -1.7551 1.9166 11 9 5.8582 -0.5837 2.2735 12 9 7.1158 -2.3234 3.0553 13 6 6.0779 -4.1882 1.2324 14 6 5.4843 -4.3889 2.6368 15 6 4.4927 -3.2652 2.2925 16 6 3.5711 -0.6889 -1.2645 17 6 2.0396 -0.7208 -1.2502 18 1 1.6973 -1.7556 -1.2384 19 6 1.5025 -0.0187 -2.4990 20 7 1.8912 -0.7769 -3.6908 21 6 1.5196 -0.3373 -4.9333 22 1 0.9403 0.5686 -5.0347 23 6 1.8883 -1.0555 -6.0625 24 7 2.5946 -2.1592 -5.9389 25 14 1.3808 -0.4562 -7.7575 26 1 2.4272 0.4495 -8.2960 27 1 1.2179 -1.6197 -8.6656 28 1 0.0939 0.2782 -7.6581 29 1 -0.3634 0.5141 0.8897 30 1 -0.3633 0.5135 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 1.6574 -0.2210 2.1398 33 1 1.6976 -1.7558 1.2382 34 1 3.9145 0.3403 1.3671 35 1 3.9416 -1.2853 2.0980 36 1 7.3129 -1.5186 1.1910 37 1 5.5982 -4.7953 0.4647 38 1 7.1658 -4.2515 1.2051 39 1 6.1723 -4.1325 3.4424 40 1 5.0114 -5.3611 2.7761 41 1 4.3007 -2.5833 3.1210 42 1 3.5795 -3.6199 1.8146 43 1 3.9412 -1.2849 -2.0988 44 1 3.9142 0.3405 -1.3676 45 1 0.4155 0.0395 -2.4439 46 1 1.9177 0.9875 -2.5571 47 1 2.4117 -1.5903 -3.5997 48 1 2.8519 -2.6612 -6.7280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133068715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:39 Heat of formation + Delta-G solvation = -101.550748 kcal Electronic energy + Delta-G solvation = -30688.728887 eV Core-core repulsion = 26415.357109 eV Total energy + Delta-G solvation = -4273.371778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.44166 -47.37397 -40.83912 -38.75245 -37.31485 -34.96757 -33.68546 -31.86945 -29.90559 -29.41943 -27.92548 -26.41586 -25.53134 -24.35884 -23.30655 -23.07971 -21.21858 -20.54506 -19.82345 -18.99250 -18.05257 -17.60434 -17.35306 -17.00735 -16.06100 -15.97780 -15.15636 -14.87786 -14.76699 -14.39108 -14.25071 -14.05357 -13.93255 -13.63617 -13.57379 -13.34393 -12.98272 -12.89815 -12.76456 -12.69124 -12.48664 -12.43021 -12.05949 -11.84103 -11.70672 -11.42043 -11.36823 -10.96339 -10.91874 -10.76970 -10.75221 -10.60409 -10.49495 -10.22039 -10.13345 -9.93626 -9.63294 -9.51499 -8.82809 -8.48586 -6.85971 -5.69792 -2.99364 2.42625 2.94281 3.46091 3.47050 3.51659 3.53805 3.72422 3.86234 3.93619 4.31845 4.42567 4.61478 4.65599 4.73471 4.77904 4.90717 4.93042 5.00178 5.19341 5.29283 5.37047 5.39512 5.52332 5.57163 5.62185 5.65251 5.66453 5.70299 5.71466 5.78562 5.84796 5.95698 5.97684 6.04480 6.05426 6.18759 6.24726 6.34403 6.47150 6.57253 6.64123 6.82867 6.91339 7.46176 7.74560 8.17857 8.48019 9.59025 10.17286 10.51471 11.52529 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.003421 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.229747 B = 8182.405569 C = 9190.022923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.071 0.929 4 C -0.130 4.130 5 C 0.095 3.905 6 N -0.600 5.600 7 C 0.527 3.473 8 O -0.518 6.518 9 C -0.169 4.169 10 C 0.294 3.706 11 F -0.194 7.194 12 F -0.194 7.194 13 C -0.100 4.100 14 C -0.148 4.148 15 C -0.120 4.120 16 C 0.119 3.881 17 C -0.100 4.100 18 H 0.073 0.927 19 C 0.159 3.841 20 N -0.733 5.733 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.067 0.933 45 H 0.027 0.973 46 H 0.018 0.982 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 0.266 23.716 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.089 0.911 4 C -0.168 4.168 5 C -0.028 4.028 6 N -0.333 5.333 7 C 0.313 3.687 8 O -0.394 6.394 9 C -0.173 4.173 10 C 0.240 3.760 11 F -0.175 7.175 12 F -0.175 7.175 13 C -0.137 4.137 14 C -0.185 4.185 15 C -0.157 4.157 16 C -0.003 4.003 17 C -0.120 4.120 18 H 0.092 0.908 19 C 0.031 3.969 20 N -0.378 5.378 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.578 5.578 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.036 0.964 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.201 0.105 23.035 23.615 hybrid contribution -0.191 0.243 -0.882 0.935 sum 5.010 0.348 22.153 22.715 Atomic orbital electron populations 1.21880 0.94991 1.01911 1.01688 1.21096 0.95934 0.99386 0.93957 0.91092 1.22024 0.94967 1.01415 0.98422 1.22275 0.94334 0.99885 0.86302 1.48128 1.42543 1.34543 1.08070 1.19746 0.79920 0.79756 0.89313 1.90796 1.60477 1.55641 1.32444 1.23264 0.99532 0.98076 0.96457 1.21269 0.91317 0.79189 0.84246 1.92996 1.81595 1.49739 1.93171 1.92954 1.85074 1.85045 1.54452 1.22749 1.01774 0.91014 0.98209 1.23114 0.98645 0.99150 0.97626 1.23024 0.97089 0.98256 0.97346 1.21784 0.93914 0.99079 0.85508 1.21697 0.94388 1.00714 0.95181 0.90833 1.20724 0.96842 0.94019 0.85359 1.42419 1.65432 1.29099 1.00813 1.19201 1.27955 1.06295 0.83810 0.91265 1.24744 1.00851 0.97498 0.97775 1.69677 1.42460 1.17198 1.28476 0.86219 0.78007 0.77452 0.84673 1.21758 1.21808 1.20817 0.93241 0.91646 0.92823 0.90905 0.91648 0.91124 0.88720 0.86419 0.87916 0.90214 0.88526 0.90541 0.89857 0.88469 0.87803 0.91499 0.95520 0.96422 0.78139 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.82 37.16 0.33 -1.42 16 2 C -0.08 -1.05 2.23 -90.57 -0.20 -1.25 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.13 -1.33 5.36 -26.61 -0.14 -1.48 16 5 C 0.09 1.01 4.27 -3.71 -0.02 0.99 16 6 N -0.60 -8.37 2.97 -172.77 -0.51 -8.88 16 7 C 0.53 7.77 6.64 -10.99 -0.07 7.70 16 8 O -0.52 -10.02 15.72 5.55 0.09 -9.94 16 9 C -0.17 -1.79 0.70 -154.85 -0.11 -1.89 16 10 C 0.29 2.74 4.75 37.16 0.18 2.92 16 11 F -0.19 -1.93 13.46 2.25 0.03 -1.90 16 12 F -0.19 -1.76 14.56 2.25 0.03 -1.73 16 13 C -0.10 -0.98 6.69 -25.92 -0.17 -1.15 16 14 C -0.15 -1.17 7.56 -25.92 -0.20 -1.36 16 15 C -0.12 -1.04 5.27 -25.92 -0.14 -1.18 16 16 C 0.12 1.99 5.53 -3.71 -0.02 1.97 16 17 C -0.10 -1.63 1.92 -90.50 -0.17 -1.81 16 18 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 19 C 0.16 3.18 5.41 -4.04 -0.02 3.15 16 20 N -0.73 -18.92 5.38 -59.91 -0.32 -19.24 16 21 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 25 Si 0.91 22.86 29.55 -169.99 -5.02 17.83 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.85 6.29 -51.93 -0.33 0.52 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.74 7.71 -51.93 -0.40 0.33 16 35 H 0.09 0.88 2.59 -51.93 -0.13 0.74 16 36 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.10 1.17 7.84 -51.93 -0.41 0.76 16 38 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.10 0.72 6.38 -51.93 -0.33 0.39 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.63 6.87 -51.93 -0.36 0.28 16 42 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 43 H 0.10 2.18 6.21 -51.93 -0.32 1.86 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.03 0.54 6.14 -51.93 -0.32 0.22 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.38 10.65 6.90 -40.82 -0.28 10.37 16 48 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -32.91 367.32 -7.95 -40.86 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.49 Total: 8.05 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.01 Total: -2.30 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.11 Total: -56.41 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.06 Total: -3.63 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.91 -7.95 -40.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133068715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.687 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds