Wall clock time and date at job start Tue Mar 31 2020 17:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46387 * 2 1 4 4 C 1.53044 * 109.45900 * 119.97904 * 2 1 3 5 5 C 1.53198 * 109.30961 * 181.37490 * 4 2 1 6 6 N 1.46924 * 108.77450 * 305.35816 * 5 4 2 7 7 C 1.34775 * 120.63313 * 233.59205 * 6 5 4 8 8 O 1.21284 * 120.00332 * 175.03573 * 7 6 5 9 9 C 1.50699 * 119.99845 * 355.03347 * 7 6 5 10 10 C 1.52999 * 112.84931 * 288.31436 * 9 7 6 11 11 F 1.39904 * 109.47215 * 64.90115 * 10 9 7 12 12 F 1.39906 * 109.47304 * 184.89874 * 10 9 7 13 13 C 1.53784 * 113.61595 * 157.00779 * 9 7 6 14 14 C 1.53779 * 87.08062 * 220.01849 * 13 9 7 15 15 C 1.53772 * 87.08260 * 25.43255 * 14 13 9 16 16 C 1.46924 * 118.73775 * 53.61010 * 6 5 4 17 17 C 1.53047 * 109.44938 * 240.03509 * 2 1 3 18 18 H 1.08998 * 109.49393 * 298.57377 * 17 2 1 19 19 C 1.52997 * 109.49507 * 58.67198 * 17 2 1 20 20 N 1.46504 * 109.46899 * 184.99963 * 19 17 2 21 21 C 1.36944 * 119.99769 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99913 * 0.02562 * 21 20 19 23 23 C 1.38806 * 119.99695 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00057 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99804 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46718 * 90.00251 * 25 23 21 27 27 H 1.48496 * 109.47105 * 210.00368 * 25 23 21 28 28 H 1.48495 * 109.47171 * 330.00703 * 25 23 21 29 29 H 1.08994 * 109.47381 * 300.02111 * 1 2 3 30 30 H 1.09002 * 109.47150 * 60.02416 * 1 2 3 31 31 H 1.09005 * 109.46788 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.49273 * 301.31959 * 4 2 1 33 33 H 1.08991 * 109.50339 * 61.41848 * 4 2 1 34 34 H 1.08992 * 109.58897 * 65.14897 * 5 4 2 35 35 H 1.09000 * 109.57967 * 185.57907 * 5 4 2 36 36 H 1.08999 * 109.47516 * 304.89865 * 10 9 7 37 37 H 1.09001 * 113.61574 * 334.57206 * 13 9 7 38 38 H 1.09002 * 113.61228 * 105.47223 * 13 9 7 39 39 H 1.09000 * 113.61392 * 270.88323 * 14 13 9 40 40 H 1.09004 * 113.61495 * 139.98330 * 14 13 9 41 41 H 1.09004 * 113.61444 * 220.01641 * 15 14 13 42 42 H 1.09004 * 113.61813 * 89.11594 * 15 14 13 43 43 H 1.09002 * 109.58551 * 186.60224 * 16 6 5 44 44 H 1.08997 * 109.58482 * 66.17943 * 16 6 5 45 45 H 1.08999 * 109.47164 * 304.99954 * 19 17 2 46 46 H 1.09001 * 109.47482 * 64.99768 * 19 17 2 47 47 H 0.96993 * 119.99947 * 359.97438 * 20 19 17 48 48 H 0.97008 * 119.99851 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7211 1.2500 5 6 3.5714 -0.6891 1.2640 6 7 4.0676 -1.2493 -0.0004 7 6 4.9616 -2.2579 -0.0006 8 8 5.2956 -2.7721 -1.0471 9 6 5.5463 -2.7468 1.2995 10 6 6.5346 -1.7551 1.9166 11 9 5.8582 -0.5837 2.2735 12 9 7.1158 -2.3234 3.0553 13 6 6.0779 -4.1882 1.2324 14 6 5.4843 -4.3889 2.6368 15 6 4.4927 -3.2652 2.2925 16 6 3.5711 -0.6889 -1.2645 17 6 2.0396 -0.7208 -1.2502 18 1 1.6973 -1.7556 -1.2384 19 6 1.5025 -0.0187 -2.4990 20 7 1.8912 -0.7769 -3.6908 21 6 1.5196 -0.3373 -4.9333 22 1 0.9403 0.5686 -5.0347 23 6 1.8883 -1.0555 -6.0625 24 7 2.5946 -2.1592 -5.9389 25 14 1.3808 -0.4562 -7.7575 26 1 2.4272 0.4495 -8.2960 27 1 1.2179 -1.6197 -8.6656 28 1 0.0939 0.2782 -7.6581 29 1 -0.3634 0.5141 0.8897 30 1 -0.3633 0.5135 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 1.6574 -0.2210 2.1398 33 1 1.6976 -1.7558 1.2382 34 1 3.9145 0.3403 1.3671 35 1 3.9416 -1.2853 2.0980 36 1 7.3129 -1.5186 1.1910 37 1 5.5982 -4.7953 0.4647 38 1 7.1658 -4.2515 1.2051 39 1 6.1723 -4.1325 3.4424 40 1 5.0114 -5.3611 2.7761 41 1 4.3007 -2.5833 3.1210 42 1 3.5795 -3.6199 1.8146 43 1 3.9412 -1.2849 -2.0988 44 1 3.9142 0.3405 -1.3676 45 1 0.4155 0.0395 -2.4439 46 1 1.9177 0.9875 -2.5571 47 1 2.4117 -1.5903 -3.5997 48 1 2.8519 -2.6612 -6.7280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133068715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:39 Heat of formation + Delta-G solvation = -121.933571 kcal Electronic energy + Delta-G solvation = -30689.612752 eV Core-core repulsion = 26415.357109 eV Total energy + Delta-G solvation = -4274.255643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.19186 -48.11705 -41.89912 -39.82343 -38.43485 -36.64030 -35.09663 -33.54356 -31.58026 -30.30922 -28.97568 -27.62094 -26.70355 -25.50582 -24.79530 -24.21152 -22.60821 -21.53371 -20.95007 -19.93158 -19.22270 -18.91621 -18.36524 -18.14700 -17.26620 -16.86410 -16.75588 -16.18822 -15.83657 -15.59900 -15.42512 -15.33083 -15.13267 -14.87124 -14.55155 -14.39355 -14.26723 -14.18717 -13.97924 -13.75687 -13.50450 -13.37410 -13.06836 -13.02496 -12.84415 -12.74536 -12.65415 -12.48913 -12.29468 -12.14471 -12.01281 -11.91628 -11.79745 -11.51326 -11.34707 -11.21251 -11.13429 -10.96041 -10.69788 -9.68887 -9.00761 -7.95404 -5.25743 1.31636 1.44390 1.47263 1.55724 1.82689 2.54552 2.62956 2.90768 3.05142 3.13781 3.37610 3.46871 3.67611 3.70303 3.80264 3.81712 3.95125 4.00129 4.05885 4.17553 4.23938 4.31388 4.44187 4.55904 4.58853 4.63284 4.66663 4.74995 4.78708 4.82769 4.86557 4.93400 4.95553 4.98777 5.04838 5.07018 5.12240 5.22542 5.26138 5.35196 5.42973 5.47448 5.51120 5.56905 6.25182 6.33129 7.01841 7.30749 8.07350 8.29529 9.28103 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.003421 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.229747 B = 8182.405569 C = 9190.022923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 H 0.082 0.918 4 C -0.124 4.124 5 C 0.091 3.909 6 N -0.597 5.597 7 C 0.521 3.479 8 O -0.578 6.578 9 C -0.168 4.168 10 C 0.300 3.700 11 F -0.194 7.194 12 F -0.188 7.188 13 C -0.108 4.108 14 C -0.132 4.132 15 C -0.116 4.116 16 C 0.125 3.875 17 C -0.086 4.086 18 H 0.050 0.950 19 C 0.157 3.843 20 N -0.748 5.748 21 C -0.246 4.246 22 H 0.079 0.921 23 C -0.078 4.078 24 N -0.972 5.972 25 Si 0.976 3.024 26 H -0.287 1.287 27 H -0.296 1.296 28 H -0.266 1.266 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.034 0.966 46 H 0.023 0.977 47 H 0.370 0.630 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.364 1.775 26.734 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.100 0.900 4 C -0.162 4.162 5 C -0.030 4.030 6 N -0.328 5.328 7 C 0.308 3.692 8 O -0.457 6.457 9 C -0.172 4.172 10 C 0.246 3.754 11 F -0.175 7.175 12 F -0.169 7.169 13 C -0.146 4.146 14 C -0.169 4.169 15 C -0.153 4.153 16 C 0.003 3.997 17 C -0.106 4.106 18 H 0.068 0.932 19 C 0.031 3.969 20 N -0.390 5.390 21 C -0.378 4.378 22 H 0.097 0.903 23 C -0.270 4.270 24 N -0.623 5.623 25 Si 0.804 3.196 26 H -0.214 1.214 27 H -0.223 1.223 28 H -0.190 1.190 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.132 0.868 36 H 0.145 0.855 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.127 0.873 40 H 0.106 0.894 41 H 0.123 0.877 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.051 0.949 46 H 0.040 0.960 47 H 0.201 0.799 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.427 1.670 26.124 26.549 hybrid contribution 0.028 -0.193 -1.782 1.793 sum 4.455 1.477 24.342 24.790 Atomic orbital electron populations 1.21849 0.94198 1.01720 1.02393 1.21090 0.96511 0.99562 0.92617 0.89977 1.22025 0.94303 1.01367 0.98472 1.22578 0.94832 1.00682 0.84862 1.48213 1.42126 1.34207 1.08255 1.20527 0.79375 0.79052 0.90196 1.90769 1.62389 1.57541 1.34986 1.23300 1.00738 0.98496 0.94631 1.21187 0.91086 0.78641 0.84517 1.92990 1.81660 1.49713 1.93184 1.92967 1.84853 1.84972 1.54078 1.22776 1.02273 0.90338 0.99169 1.23057 0.98139 0.99487 0.96211 1.23068 0.96458 0.98796 0.97015 1.21439 0.94307 0.98282 0.85718 1.21540 0.93798 0.99509 0.95751 0.93152 1.20917 0.97188 0.93825 0.85010 1.42674 1.65251 1.29098 1.02010 1.19671 1.26917 1.06159 0.85022 0.90327 1.25637 1.01568 0.97912 1.01881 1.69870 1.44435 1.18851 1.29123 0.85106 0.78201 0.76732 0.79518 1.21383 1.22286 1.19021 0.90213 0.93226 0.93490 0.87201 0.92035 0.89915 0.86809 0.85517 0.90241 0.89393 0.87320 0.89405 0.87746 0.89171 0.92899 0.91060 0.94851 0.95956 0.79854 0.94136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.82 71.98 0.63 -2.43 16 2 C -0.08 -1.79 2.23 -10.76 -0.02 -1.81 16 3 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.12 -2.13 5.36 30.68 0.16 -1.97 16 5 C 0.09 1.71 4.27 86.36 0.37 2.08 16 6 N -0.60 -16.69 2.97 -818.92 -2.43 -19.12 16 7 C 0.52 15.85 6.64 87.66 0.58 16.44 16 8 O -0.58 -24.14 15.72 -3.04 -0.05 -24.19 16 9 C -0.17 -3.39 0.70 -52.40 -0.04 -3.42 16 10 C 0.30 4.99 4.75 71.98 0.34 5.33 16 11 F -0.19 -3.30 13.46 44.97 0.61 -2.70 16 12 F -0.19 -2.86 14.56 44.97 0.65 -2.21 16 13 C -0.11 -2.08 6.69 31.12 0.21 -1.87 16 14 C -0.13 -1.77 7.56 31.12 0.24 -1.54 16 15 C -0.12 -1.75 5.27 31.12 0.16 -1.59 16 16 C 0.13 4.41 5.53 86.36 0.48 4.89 16 17 C -0.09 -2.86 1.92 -10.72 -0.02 -2.88 16 18 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 19 C 0.16 6.41 5.41 86.38 0.47 6.88 16 20 N -0.75 -40.18 5.38 -343.45 -1.85 -42.03 16 21 C -0.25 -14.31 9.99 84.03 0.84 -13.47 16 22 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 23 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 24 N -0.97 -63.16 13.06 21.65 0.28 -62.87 16 25 Si 0.98 47.84 29.55 68.60 2.03 49.87 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 28 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.21 6.29 -2.39 -0.02 1.19 16 31 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.43 7.71 -2.39 -0.02 1.41 16 35 H 0.11 1.72 2.59 -2.39 -0.01 1.72 16 36 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 1.92 7.84 -2.39 -0.02 1.90 16 38 H 0.09 1.52 8.10 -2.39 -0.02 1.50 16 39 H 0.11 1.26 6.38 -2.39 -0.02 1.24 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.10 1.16 6.87 -2.38 -0.02 1.14 16 42 H 0.09 1.53 8.09 -2.38 -0.02 1.51 16 43 H 0.05 2.42 6.21 -2.39 -0.01 2.41 16 44 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.03 1.34 6.14 -2.39 -0.01 1.33 16 46 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.37 21.84 6.90 -92.71 -0.64 21.20 16 48 H 0.25 15.73 8.31 -92.70 -0.77 14.96 16 Total: -1.00 -75.58 367.32 4.44 -71.14 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.34 Total: 31.72 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 4.87 Total: 0.39 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -4.00 Total: -124.03 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.05 Total: -24.19 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 1.26 Total: -4.90 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.87 kcal Total: -75.58 4.44 -71.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133068715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.798 kcal (2) G-P(sol) polarization free energy of solvation -75.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds