Wall clock time and date at job start Tue Mar 31 2020 17:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.46285 * 2 1 4 4 C 1.53047 * 109.46097 * 240.02701 * 2 1 3 5 5 C 1.53188 * 109.31187 * 178.62863 * 4 2 1 6 6 N 1.46924 * 108.77686 * 54.63616 * 5 4 2 7 7 C 1.34778 * 120.63217 * 126.36584 * 6 5 4 8 8 O 1.21274 * 120.00241 * 175.41925 * 7 6 5 9 9 C 1.50706 * 119.99849 * 355.41608 * 7 6 5 10 10 C 1.53002 * 112.84801 * 76.23062 * 9 7 6 11 11 F 1.39905 * 109.47103 * 305.53699 * 10 9 7 12 12 F 1.39896 * 109.47229 * 65.53757 * 10 9 7 13 13 C 1.53779 * 113.61352 * 304.92640 * 9 7 6 14 14 C 1.53779 * 87.07891 * 220.01926 * 13 9 7 15 15 C 1.53781 * 87.08488 * 25.43284 * 14 13 9 16 16 C 1.46929 * 118.73962 * 306.64497 * 6 5 4 17 17 C 1.52756 * 109.00686 * 53.30434 * 16 6 5 18 18 H 1.09003 * 109.38695 * 65.52260 * 17 16 6 19 19 C 1.53007 * 109.56438 * 185.55561 * 17 16 6 20 20 N 1.46508 * 109.46859 * 294.96872 * 19 17 16 21 21 C 1.36933 * 119.99469 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00899 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99701 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00237 * 179.97438 * 23 21 20 25 25 Si 1.86809 * 119.99944 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46804 * 89.99664 * 25 23 21 27 27 H 1.48493 * 109.47049 * 209.99759 * 25 23 21 28 28 H 1.48502 * 109.46779 * 329.99923 * 25 23 21 29 29 H 1.09002 * 109.47600 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47509 * 299.97338 * 1 2 3 31 31 H 1.09006 * 109.46707 * 59.97329 * 1 2 3 32 32 H 1.09003 * 109.49452 * 58.67973 * 4 2 1 33 33 H 1.08999 * 109.52447 * 298.59859 * 4 2 1 34 34 H 1.09002 * 109.58857 * 294.85065 * 5 4 2 35 35 H 1.09003 * 109.70426 * 174.49662 * 5 4 2 36 36 H 1.08994 * 109.47007 * 185.53739 * 10 9 7 37 37 H 1.09002 * 113.61461 * 334.56377 * 13 9 7 38 38 H 1.08997 * 113.61532 * 105.47331 * 13 9 7 39 39 H 1.08997 * 113.61431 * 270.88256 * 14 13 9 40 40 H 1.09004 * 113.61893 * 139.98112 * 14 13 9 41 41 H 1.09003 * 113.61427 * 220.02406 * 15 14 13 42 42 H 1.08996 * 113.69113 * 89.12637 * 15 14 13 43 43 H 1.09000 * 109.58942 * 173.14517 * 16 6 5 44 44 H 1.08998 * 109.58412 * 293.56679 * 16 6 5 45 45 H 1.08996 * 109.47252 * 54.96230 * 19 17 16 46 46 H 1.08995 * 109.47297 * 174.97288 * 19 17 16 47 47 H 0.97000 * 120.00100 * 359.97438 * 20 19 17 48 48 H 0.96997 * 120.00033 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5713 -0.6890 -1.2640 6 7 4.0676 -1.2493 0.0003 7 6 4.9609 -2.2585 0.0005 8 8 5.4257 -2.6568 1.0474 9 6 5.3822 -2.8921 -1.3004 10 6 6.3677 -2.0284 -2.0902 11 9 5.8233 -0.7535 -2.2787 12 9 7.5682 -1.9225 -1.3797 13 6 4.2049 -3.4127 -2.1418 14 6 5.0844 -4.6289 -2.4767 15 6 5.8253 -4.3577 -1.1567 16 6 3.5668 -0.6928 1.2645 17 6 2.0395 -0.7209 1.2501 18 1 1.6968 -1.7555 1.2386 19 6 1.5024 -0.0188 2.4990 20 7 1.8910 -0.7772 3.6907 21 6 1.5203 -0.3371 4.9333 22 1 0.9417 0.5692 5.0349 23 6 1.8881 -1.0559 6.0624 24 7 1.5322 -0.6327 7.2569 25 14 2.8894 -2.6231 5.8869 26 1 4.3367 -2.2932 5.9297 27 1 2.5595 -3.5486 7.0003 28 1 2.5680 -3.2733 4.5910 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5134 0.8902 31 1 -0.3633 0.5143 -0.8898 32 1 1.6574 -0.2208 -2.1399 33 1 1.6976 -1.7557 -1.2389 34 1 3.9145 0.3404 -1.3670 35 1 3.9437 -1.2835 -2.0983 36 1 6.5586 -2.4889 -3.0594 37 1 3.3227 -3.6611 -1.5517 38 1 3.9758 -2.7885 -3.0054 39 1 5.7043 -4.4887 -3.3622 40 1 4.5393 -5.5728 -2.4855 41 1 6.9043 -4.4963 -1.2252 42 1 5.3873 -4.8640 -0.2966 43 1 3.9341 -1.2912 2.0982 44 1 3.9095 0.3363 1.3718 45 1 1.9176 0.9873 2.5572 46 1 0.4154 0.0393 2.4439 47 1 2.4110 -1.5910 3.5995 48 1 1.7888 -1.1352 8.0458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133068716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:43 Heat of formation + Delta-G solvation = -100.130251 kcal Electronic energy + Delta-G solvation = -30916.014668 eV Core-core repulsion = 26642.704488 eV Total energy + Delta-G solvation = -4273.310180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.41338 -47.38009 -40.99051 -38.98373 -37.52407 -35.14140 -33.77641 -31.95021 -30.32362 -29.26587 -28.03597 -26.51435 -25.90405 -24.73243 -23.38381 -22.90537 -21.13066 -20.71286 -19.93006 -18.83449 -18.26152 -17.59033 -17.52757 -17.36738 -16.23637 -16.13619 -15.19493 -14.99634 -14.87219 -14.59098 -14.34875 -14.13827 -14.03735 -13.81213 -13.53645 -13.29985 -13.06838 -12.98577 -12.86629 -12.73504 -12.61081 -12.55559 -12.11831 -11.95793 -11.82223 -11.66771 -11.53751 -11.22979 -11.03262 -10.94254 -10.85604 -10.78527 -10.61647 -10.30617 -10.11644 -10.01374 -9.64048 -9.51557 -8.84457 -8.58084 -7.17344 -5.72045 -3.07241 2.40909 2.85259 3.29058 3.45768 3.50481 3.54433 3.59509 3.68410 3.90756 4.16326 4.25771 4.48879 4.61696 4.65924 4.69697 4.76369 4.81413 4.82115 5.07848 5.08730 5.24751 5.26224 5.37295 5.39888 5.46090 5.53967 5.55189 5.57205 5.61769 5.66364 5.72897 5.79232 5.82724 5.86331 5.89153 6.03603 6.11793 6.25788 6.34881 6.38459 6.52808 6.72851 6.78905 7.37258 8.03743 8.10622 8.47043 9.26194 9.99163 10.18446 11.46297 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.004165 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.749427 B = 6721.763357 C = 7856.626624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.073 0.927 4 C -0.131 4.131 5 C 0.098 3.902 6 N -0.601 5.601 7 C 0.527 3.473 8 O -0.524 6.524 9 C -0.171 4.171 10 C 0.292 3.708 11 F -0.195 7.195 12 F -0.193 7.193 13 C -0.116 4.116 14 C -0.146 4.146 15 C -0.102 4.102 16 C 0.118 3.882 17 C -0.105 4.105 18 H 0.072 0.928 19 C 0.163 3.837 20 N -0.757 5.757 21 C -0.244 4.244 22 H 0.090 0.910 23 C 0.007 3.993 24 N -0.935 5.935 25 Si 0.881 3.119 26 H -0.282 1.282 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.028 0.972 46 H 0.036 0.964 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.687 -4.581 -29.222 30.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.169 4.169 5 C -0.025 4.025 6 N -0.333 5.333 7 C 0.313 3.687 8 O -0.399 6.399 9 C -0.176 4.176 10 C 0.238 3.762 11 F -0.176 7.176 12 F -0.174 7.174 13 C -0.154 4.154 14 C -0.183 4.183 15 C -0.139 4.139 16 C -0.003 4.003 17 C -0.125 4.125 18 H 0.091 0.909 19 C 0.035 3.965 20 N -0.403 5.403 21 C -0.374 4.374 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.583 5.583 25 Si 0.711 3.289 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.046 0.954 46 H 0.054 0.946 47 H 0.194 0.806 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.858 -4.604 -28.443 29.403 hybrid contribution 0.726 -0.866 0.142 1.139 sum 6.584 -5.470 -28.301 29.567 Atomic orbital electron populations 1.21888 0.94802 1.01933 1.01916 1.21077 0.96050 0.99503 0.93663 0.90855 1.22050 0.94961 1.01401 0.98508 1.22237 0.94186 0.99882 0.86174 1.48080 1.42665 1.34563 1.07986 1.19834 0.79463 0.79693 0.89704 1.90751 1.54149 1.62184 1.32815 1.23313 0.99613 0.98285 0.96340 1.21457 0.79101 0.80349 0.95270 1.92999 1.85492 1.43093 1.96012 1.93039 1.46946 1.96270 1.81187 1.23051 0.96047 0.97200 0.99083 1.22987 0.98657 0.99052 0.97600 1.22768 1.01921 0.90210 0.99027 1.21663 0.93741 0.99506 0.85433 1.21690 0.94374 1.00758 0.95647 0.90929 1.20711 0.97391 0.94117 0.84241 1.42776 1.66366 1.28521 1.02608 1.19040 1.28677 1.07802 0.81852 0.89202 1.24641 1.00553 0.98608 0.95108 1.69701 1.50958 1.40599 0.97010 0.86601 0.80900 0.84499 0.76868 1.20871 1.21732 1.20389 0.92834 0.91495 0.93094 0.90753 0.91626 0.91072 0.88871 0.86120 0.88102 0.89652 0.89552 0.89931 0.89955 0.87946 0.88655 0.91141 0.95450 0.94630 0.80598 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.82 37.16 0.33 -1.31 16 2 C -0.08 -0.97 2.23 -90.58 -0.20 -1.17 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.20 5.36 -26.61 -0.14 -1.34 16 5 C 0.10 0.97 4.11 -3.71 -0.02 0.96 16 6 N -0.60 -8.27 2.98 -173.03 -0.52 -8.78 16 7 C 0.53 7.85 6.42 -10.98 -0.07 7.77 16 8 O -0.52 -10.28 15.86 5.56 0.09 -10.19 16 9 C -0.17 -1.69 0.46 -154.84 -0.07 -1.76 16 10 C 0.29 2.55 4.47 37.16 0.17 2.72 16 11 F -0.19 -1.88 13.26 2.25 0.03 -1.85 16 12 F -0.19 -2.33 17.19 2.25 0.04 -2.29 16 13 C -0.12 -0.77 5.46 -25.92 -0.14 -0.91 16 14 C -0.15 -0.78 7.73 -25.92 -0.20 -0.98 16 15 C -0.10 -0.89 6.84 -25.92 -0.18 -1.07 16 16 C 0.12 1.94 5.48 -3.93 -0.02 1.92 16 17 C -0.11 -1.62 1.90 -90.72 -0.17 -1.79 16 18 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 19 C 0.16 3.15 5.41 -4.03 -0.02 3.12 16 20 N -0.76 -18.62 5.18 -59.90 -0.31 -18.93 16 21 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 22 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 23 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 24 N -0.93 -30.18 13.97 55.49 0.78 -29.41 16 25 Si 0.88 23.55 27.74 -169.99 -4.71 18.84 16 26 H -0.28 -7.63 7.11 56.52 0.40 -7.23 16 27 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 28 H -0.28 -7.13 6.52 56.52 0.37 -6.76 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.83 6.29 -51.93 -0.33 0.50 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 35 H 0.09 0.74 2.69 -51.93 -0.14 0.60 16 36 H 0.12 0.54 7.32 -51.93 -0.38 0.16 16 37 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.09 0.39 6.94 -51.93 -0.36 0.03 16 39 H 0.09 0.29 7.61 -51.93 -0.40 -0.11 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 42 H 0.10 1.08 7.92 -51.93 -0.41 0.67 16 43 H 0.10 1.91 6.23 -51.93 -0.32 1.59 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.04 0.69 6.14 -51.93 -0.32 0.37 16 47 H 0.36 8.95 4.75 -40.82 -0.19 8.76 16 48 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 LS Contribution 367.18 15.07 5.53 5.53 Total: -1.00 -35.88 367.18 -7.57 -43.44 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.49 Total: 4.63 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -1.00 Total: -0.99 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.05 Total: -57.12 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.07 Total: -4.15 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -4.71 Total: 18.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.88 -7.57 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133068716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.687 kcal (2) G-P(sol) polarization free energy of solvation -35.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds