Wall clock time and date at job start Tue Mar 31 2020 17:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.46285 * 2 1 4 4 C 1.53047 * 109.46097 * 240.02701 * 2 1 3 5 5 C 1.53188 * 109.31187 * 178.62863 * 4 2 1 6 6 N 1.46924 * 108.77686 * 54.63616 * 5 4 2 7 7 C 1.34778 * 120.63217 * 126.36584 * 6 5 4 8 8 O 1.21274 * 120.00241 * 175.41925 * 7 6 5 9 9 C 1.50706 * 119.99849 * 355.41608 * 7 6 5 10 10 C 1.53002 * 112.84801 * 76.23062 * 9 7 6 11 11 F 1.39905 * 109.47103 * 305.53699 * 10 9 7 12 12 F 1.39896 * 109.47229 * 65.53757 * 10 9 7 13 13 C 1.53779 * 113.61352 * 304.92640 * 9 7 6 14 14 C 1.53779 * 87.07891 * 220.01926 * 13 9 7 15 15 C 1.53781 * 87.08488 * 25.43284 * 14 13 9 16 16 C 1.46929 * 118.73962 * 306.64497 * 6 5 4 17 17 C 1.52756 * 109.00686 * 53.30434 * 16 6 5 18 18 H 1.09003 * 109.38695 * 65.52260 * 17 16 6 19 19 C 1.53007 * 109.56438 * 185.55561 * 17 16 6 20 20 N 1.46508 * 109.46859 * 294.96872 * 19 17 16 21 21 C 1.36933 * 119.99469 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00899 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99701 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00237 * 179.97438 * 23 21 20 25 25 Si 1.86809 * 119.99944 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46804 * 89.99664 * 25 23 21 27 27 H 1.48493 * 109.47049 * 209.99759 * 25 23 21 28 28 H 1.48502 * 109.46779 * 329.99923 * 25 23 21 29 29 H 1.09002 * 109.47600 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47509 * 299.97338 * 1 2 3 31 31 H 1.09006 * 109.46707 * 59.97329 * 1 2 3 32 32 H 1.09003 * 109.49452 * 58.67973 * 4 2 1 33 33 H 1.08999 * 109.52447 * 298.59859 * 4 2 1 34 34 H 1.09002 * 109.58857 * 294.85065 * 5 4 2 35 35 H 1.09003 * 109.70426 * 174.49662 * 5 4 2 36 36 H 1.08994 * 109.47007 * 185.53739 * 10 9 7 37 37 H 1.09002 * 113.61461 * 334.56377 * 13 9 7 38 38 H 1.08997 * 113.61532 * 105.47331 * 13 9 7 39 39 H 1.08997 * 113.61431 * 270.88256 * 14 13 9 40 40 H 1.09004 * 113.61893 * 139.98112 * 14 13 9 41 41 H 1.09003 * 113.61427 * 220.02406 * 15 14 13 42 42 H 1.08996 * 113.69113 * 89.12637 * 15 14 13 43 43 H 1.09000 * 109.58942 * 173.14517 * 16 6 5 44 44 H 1.08998 * 109.58412 * 293.56679 * 16 6 5 45 45 H 1.08996 * 109.47252 * 54.96230 * 19 17 16 46 46 H 1.08995 * 109.47297 * 174.97288 * 19 17 16 47 47 H 0.97000 * 120.00100 * 359.97438 * 20 19 17 48 48 H 0.96997 * 120.00033 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5713 -0.6890 -1.2640 6 7 4.0676 -1.2493 0.0003 7 6 4.9609 -2.2585 0.0005 8 8 5.4257 -2.6568 1.0474 9 6 5.3822 -2.8921 -1.3004 10 6 6.3677 -2.0284 -2.0902 11 9 5.8233 -0.7535 -2.2787 12 9 7.5682 -1.9225 -1.3797 13 6 4.2049 -3.4127 -2.1418 14 6 5.0844 -4.6289 -2.4767 15 6 5.8253 -4.3577 -1.1567 16 6 3.5668 -0.6928 1.2645 17 6 2.0395 -0.7209 1.2501 18 1 1.6968 -1.7555 1.2386 19 6 1.5024 -0.0188 2.4990 20 7 1.8910 -0.7772 3.6907 21 6 1.5203 -0.3371 4.9333 22 1 0.9417 0.5692 5.0349 23 6 1.8881 -1.0559 6.0624 24 7 1.5322 -0.6327 7.2569 25 14 2.8894 -2.6231 5.8869 26 1 4.3367 -2.2932 5.9297 27 1 2.5595 -3.5486 7.0003 28 1 2.5680 -3.2733 4.5910 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5134 0.8902 31 1 -0.3633 0.5143 -0.8898 32 1 1.6574 -0.2208 -2.1399 33 1 1.6976 -1.7557 -1.2389 34 1 3.9145 0.3404 -1.3670 35 1 3.9437 -1.2835 -2.0983 36 1 6.5586 -2.4889 -3.0594 37 1 3.3227 -3.6611 -1.5517 38 1 3.9758 -2.7885 -3.0054 39 1 5.7043 -4.4887 -3.3622 40 1 4.5393 -5.5728 -2.4855 41 1 6.9043 -4.4963 -1.2252 42 1 5.3873 -4.8640 -0.2966 43 1 3.9341 -1.2912 2.0982 44 1 3.9095 0.3363 1.3718 45 1 1.9176 0.9873 2.5572 46 1 0.4154 0.0393 2.4439 47 1 2.4110 -1.5910 3.5995 48 1 1.7888 -1.1352 8.0458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133068716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:42 Heat of formation + Delta-G solvation = -124.234597 kcal Electronic energy + Delta-G solvation = -30917.059911 eV Core-core repulsion = 26642.704488 eV Total energy + Delta-G solvation = -4274.355423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.12986 -48.12840 -41.93567 -39.93884 -38.58968 -36.81420 -35.12373 -33.74395 -31.98363 -30.04867 -28.98750 -27.72470 -26.73625 -25.69770 -24.61355 -24.24061 -22.60928 -21.62407 -20.96937 -19.69718 -19.67046 -19.03206 -18.30941 -18.18378 -17.31842 -16.96921 -16.77911 -16.15650 -15.95358 -15.83426 -15.51072 -15.34579 -15.02266 -14.96206 -14.67836 -14.59223 -14.33662 -14.16647 -13.97166 -13.73111 -13.55389 -13.49528 -13.32331 -13.08679 -12.88774 -12.79511 -12.67983 -12.54022 -12.32150 -12.23017 -12.03992 -11.92223 -11.83106 -11.48615 -11.47031 -11.27530 -11.13224 -11.05862 -10.70060 -9.73168 -9.34374 -8.10676 -5.42140 1.26918 1.32026 1.35152 1.35637 1.82113 2.38299 2.61406 2.92164 3.11226 3.20560 3.21537 3.43903 3.52788 3.70351 3.75841 3.78024 3.88613 3.96968 4.04331 4.06562 4.20947 4.25637 4.39597 4.51730 4.57080 4.64721 4.67622 4.71467 4.77117 4.79060 4.88322 4.89993 4.95366 4.98810 5.04852 5.09373 5.10898 5.17746 5.22089 5.34121 5.42311 5.49895 5.55137 5.69667 6.14628 6.31204 6.99945 7.00183 7.77592 7.94247 9.11059 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.004165 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.749427 B = 6721.763357 C = 7856.626624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 H 0.078 0.922 4 C -0.123 4.123 5 C 0.093 3.907 6 N -0.598 5.598 7 C 0.513 3.487 8 O -0.588 6.588 9 C -0.176 4.176 10 C 0.286 3.714 11 F -0.200 7.200 12 F -0.218 7.218 13 C -0.109 4.109 14 C -0.122 4.122 15 C -0.114 4.114 16 C 0.120 3.880 17 C -0.090 4.090 18 H 0.062 0.938 19 C 0.159 3.841 20 N -0.762 5.762 21 C -0.231 4.231 22 H 0.065 0.935 23 C -0.053 4.053 24 N -0.978 5.978 25 Si 0.943 3.057 26 H -0.289 1.289 27 H -0.286 1.286 28 H -0.265 1.265 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.180 0.820 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.066 0.934 45 H 0.026 0.974 46 H 0.042 0.958 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.502 -5.357 -34.462 35.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 H 0.096 0.904 4 C -0.160 4.160 5 C -0.028 4.028 6 N -0.329 5.329 7 C 0.301 3.699 8 O -0.468 6.468 9 C -0.180 4.180 10 C 0.233 3.767 11 F -0.181 7.181 12 F -0.200 7.200 13 C -0.147 4.147 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.003 4.003 17 C -0.109 4.109 18 H 0.080 0.920 19 C 0.033 3.967 20 N -0.407 5.407 21 C -0.362 4.362 22 H 0.083 0.917 23 C -0.245 4.245 24 N -0.629 5.629 25 Si 0.771 3.229 26 H -0.216 1.216 27 H -0.212 1.212 28 H -0.191 1.191 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.197 0.803 37 H 0.106 0.894 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.044 0.956 46 H 0.060 0.940 47 H 0.193 0.807 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.645 -5.358 -33.770 34.655 hybrid contribution 0.759 -0.509 1.787 2.007 sum 6.404 -5.866 -31.983 33.141 Atomic orbital electron populations 1.21855 0.93996 1.02005 1.02363 1.21088 0.96617 0.99499 0.92678 0.90396 1.22045 0.93950 1.01778 0.98274 1.22581 0.94961 1.00381 0.84886 1.48210 1.42228 1.34225 1.08273 1.20920 0.78626 0.79263 0.91082 1.90709 1.56377 1.64093 1.35633 1.23541 1.01907 0.98310 0.94287 1.22087 0.77622 0.80036 0.96941 1.92979 1.85488 1.43671 1.96004 1.92993 1.48497 1.96364 1.82112 1.23113 0.94479 0.97980 0.99093 1.22985 0.97742 0.98848 0.96353 1.22817 1.02363 0.89635 1.00413 1.21375 0.94461 0.98429 0.86002 1.21535 0.93412 1.00172 0.95811 0.91980 1.20934 0.97807 0.93852 0.84150 1.42874 1.66206 1.28906 1.02753 1.19086 1.26878 1.06465 0.83733 0.91679 1.25304 1.02423 1.01893 0.94911 1.69838 1.53014 1.42268 0.97782 0.85604 0.78783 0.81120 0.77354 1.21553 1.21201 1.19074 0.92948 0.93501 0.90201 0.86991 0.91161 0.90715 0.86107 0.80314 0.89358 0.86185 0.86077 0.89106 0.89828 0.91005 0.93116 0.91558 0.95632 0.93982 0.80739 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.82 71.98 0.63 -2.17 16 2 C -0.08 -1.66 2.23 -10.77 -0.02 -1.68 16 3 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.12 -1.73 5.36 30.67 0.16 -1.56 16 5 C 0.09 1.54 4.11 86.36 0.35 1.90 16 6 N -0.60 -16.17 2.98 -819.74 -2.44 -18.61 16 7 C 0.51 15.42 6.42 87.66 0.56 15.98 16 8 O -0.59 -24.60 15.86 -3.01 -0.05 -24.65 16 9 C -0.18 -3.11 0.46 -52.40 -0.02 -3.13 16 10 C 0.29 4.06 4.47 71.98 0.32 4.38 16 11 F -0.20 -3.17 13.26 44.97 0.60 -2.57 16 12 F -0.22 -5.01 17.19 44.97 0.77 -4.24 16 13 C -0.11 -0.99 5.46 31.12 0.17 -0.82 16 14 C -0.12 -0.77 7.73 31.12 0.24 -0.52 16 15 C -0.11 -1.85 6.84 31.12 0.21 -1.64 16 16 C 0.12 4.09 5.48 86.22 0.47 4.56 16 17 C -0.09 -2.75 1.90 -10.86 -0.02 -2.77 16 18 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 19 C 0.16 6.24 5.41 86.38 0.47 6.70 16 20 N -0.76 -38.55 5.18 -343.44 -1.78 -40.32 16 21 C -0.23 -13.89 10.47 84.04 0.88 -13.01 16 22 H 0.07 4.19 8.06 -2.91 -0.02 4.16 16 23 C -0.05 -3.33 5.50 84.86 0.47 -2.86 16 24 N -0.98 -65.16 13.97 21.65 0.30 -64.85 16 25 Si 0.94 50.42 27.74 68.60 1.90 52.32 16 26 H -0.29 -15.64 7.11 99.48 0.71 -14.93 16 27 H -0.29 -14.97 7.11 99.48 0.71 -14.26 16 28 H -0.27 -13.46 6.52 99.48 0.65 -12.82 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.09 6.29 -2.39 -0.02 1.07 16 31 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.25 7.88 -2.39 -0.02 1.23 16 35 H 0.12 1.35 2.69 -2.39 -0.01 1.35 16 36 H 0.18 0.51 7.32 -2.39 -0.02 0.49 16 37 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 38 H 0.12 0.29 6.94 -2.39 -0.02 0.27 16 39 H 0.12 -0.01 7.61 -2.39 -0.02 -0.02 16 40 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 41 H 0.08 1.29 8.08 -2.39 -0.02 1.27 16 42 H 0.07 1.59 7.92 -2.39 -0.02 1.57 16 43 H 0.05 2.18 6.23 -2.39 -0.01 2.16 16 44 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 46 H 0.04 1.63 6.14 -2.39 -0.01 1.62 16 47 H 0.36 18.35 4.75 -92.71 -0.44 17.91 16 48 H 0.26 16.43 8.31 -92.71 -0.77 15.66 16 Total: -1.00 -85.20 367.18 4.66 -80.54 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.47 Total: 19.03 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 4.88 Total: 3.34 kcal Atomic # 7 Polarization: -119.87 SS G_CDS: -3.92 Total: -123.79 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.65 kcal Atomic # 9 Polarization: -8.17 SS G_CDS: 1.37 Total: -6.81 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 1.90 Total: 52.32 kcal Total: -85.20 4.66 -80.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133068716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.691 kcal (2) G-P(sol) polarization free energy of solvation -85.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds