Wall clock time and date at job start Tue Mar 31 2020 17:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.45757 * 2 1 4 4 C 1.53043 * 109.46146 * 240.02641 * 2 1 3 5 5 C 1.53195 * 109.30834 * 301.35527 * 4 2 1 6 6 N 1.46920 * 108.77777 * 305.36293 * 5 4 2 7 7 C 1.34777 * 120.63301 * 233.58577 * 6 5 4 8 8 O 1.21280 * 120.00010 * 187.16435 * 7 6 5 9 9 C 1.50700 * 119.99818 * 6.88828 * 7 6 5 10 10 C 1.52999 * 115.54913 * 282.64905 * 9 7 6 11 11 C 1.53006 * 109.46906 * 292.77971 * 10 9 7 12 12 F 1.39903 * 109.47204 * 52.77618 * 10 9 7 13 13 F 1.39896 * 109.47188 * 172.77922 * 10 9 7 14 14 C 1.53004 * 117.49784 * 136.98079 * 9 7 6 15 15 C 1.52998 * 117.49834 * 68.31847 * 9 7 6 16 16 C 1.46926 * 118.73499 * 53.86840 * 6 5 4 17 17 C 1.53044 * 109.44733 * 119.96127 * 2 1 3 18 18 H 1.09002 * 109.49575 * 178.60000 * 17 2 1 19 19 C 1.52998 * 109.49896 * 298.69787 * 17 2 1 20 20 N 1.46499 * 109.46828 * 185.00001 * 19 17 2 21 21 C 1.36942 * 119.99562 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00219 * 0.02562 * 21 20 19 23 23 C 1.38808 * 119.99833 * 179.97438 * 21 20 19 24 24 N 1.31621 * 120.00007 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00111 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47118 * 89.99597 * 25 23 21 27 27 H 1.48501 * 109.47225 * 209.99770 * 25 23 21 28 28 H 1.48503 * 109.47072 * 329.99758 * 25 23 21 29 29 H 1.09005 * 109.47052 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47723 * 299.97382 * 1 2 3 31 31 H 1.09004 * 109.47333 * 59.97602 * 1 2 3 32 32 H 1.08999 * 109.49434 * 181.40691 * 4 2 1 33 33 H 1.08998 * 109.52693 * 61.32260 * 4 2 1 34 34 H 1.09008 * 109.58522 * 185.57704 * 5 4 2 35 35 H 1.09000 * 109.70354 * 65.22910 * 5 4 2 36 36 H 1.08997 * 109.47411 * 56.16973 * 11 10 9 37 37 H 1.09003 * 109.46946 * 176.16325 * 11 10 9 38 38 H 1.08996 * 109.47183 * 296.15751 * 11 10 9 39 39 H 1.09000 * 117.49622 * 359.97438 * 14 9 7 40 40 H 1.08996 * 117.49790 * 145.01816 * 14 9 7 41 41 H 1.09000 * 117.49922 * 214.97785 * 15 9 7 42 42 H 1.09001 * 117.49777 * 359.97438 * 15 9 7 43 43 H 1.08998 * 109.59508 * 65.92224 * 16 6 5 44 44 H 1.09004 * 109.58609 * 186.35155 * 16 6 5 45 45 H 1.09001 * 109.47313 * 305.00181 * 19 17 2 46 46 H 1.09001 * 109.46935 * 65.00111 * 19 17 2 47 47 H 0.96992 * 120.00420 * 0.02562 * 20 19 17 48 48 H 0.97001 * 119.99990 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 1.4993 -2.1543 -1.2640 6 7 1.8621 -2.8089 0.0003 7 6 2.5149 -3.9880 0.0005 8 8 2.6942 -4.5817 1.0427 9 6 3.0167 -4.5716 -1.2952 10 6 1.9557 -5.2372 -2.1738 11 6 1.4341 -6.4963 -1.4783 12 9 0.8968 -4.3467 -2.3817 13 9 2.5211 -5.5849 -3.4053 14 6 4.4204 -5.1804 -1.2990 15 6 4.1632 -3.8443 -2.0004 16 6 1.4940 -2.1568 1.2644 17 6 2.0395 -0.7207 1.2503 18 1 3.1293 -0.7430 1.2386 19 6 1.5565 0.0196 2.4990 20 7 2.1418 -0.5996 3.6908 21 6 1.8511 -0.1027 4.9333 22 1 1.1901 0.7453 5.0347 23 6 2.4051 -0.6898 6.0625 24 7 2.1254 -0.2126 7.2569 25 14 3.5478 -2.1571 5.8872 26 1 4.9478 -1.6808 5.7520 27 1 3.4327 -3.0207 7.0898 28 1 3.1714 -2.9363 4.6804 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5134 0.8902 31 1 -0.3634 0.5142 -0.8898 32 1 3.1296 -0.7431 -1.2380 33 1 1.6965 -0.1939 -2.1401 34 1 1.9380 -2.7021 -2.0982 35 1 0.4145 -2.1369 -1.3685 36 1 1.0552 -6.2351 -0.4903 37 1 0.6307 -6.9328 -2.0717 38 1 2.2447 -7.2180 -1.3777 39 1 4.9811 -5.1584 -0.3645 40 1 4.5881 -6.0548 -1.9277 41 1 4.1618 -3.8403 -3.0904 42 1 4.5543 -2.9434 -1.5275 43 1 0.4087 -2.1373 1.3632 44 1 1.9292 -2.7062 2.0992 45 1 1.8640 1.0640 2.4440 46 1 0.4695 -0.0365 2.5570 47 1 2.7357 -1.3610 3.5997 48 1 2.5128 -0.6226 8.0460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133118339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:21 Heat of formation + Delta-G solvation = -94.266042 kcal Electronic energy + Delta-G solvation = -30939.556592 eV Core-core repulsion = 26666.500703 eV Total energy + Delta-G solvation = -4273.055889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.45972 -47.43599 -40.72451 -38.69055 -36.77281 -35.10619 -33.58348 -31.93019 -31.62405 -30.28255 -27.84772 -26.58092 -25.16827 -24.57737 -22.97775 -22.92702 -22.31376 -21.12264 -19.59646 -18.49862 -18.01529 -17.76449 -17.38629 -16.74282 -16.28436 -15.94415 -15.34333 -15.09011 -14.89511 -14.61833 -14.26122 -14.12565 -13.90297 -13.74195 -13.67573 -13.50876 -13.27172 -12.97532 -12.85145 -12.67125 -12.63479 -12.51107 -12.11796 -11.93734 -11.92220 -11.67033 -11.54767 -11.21419 -11.13394 -11.00203 -10.86358 -10.71366 -10.61756 -10.35351 -10.18618 -10.04432 -9.80803 -9.53885 -8.86814 -8.58091 -7.19830 -5.73833 -3.09331 2.27064 2.71109 3.04030 3.29526 3.42994 3.49897 3.51434 3.70231 3.89244 4.12043 4.17451 4.48942 4.55959 4.63912 4.66981 4.77927 4.82246 5.02141 5.06974 5.16789 5.17696 5.22902 5.29969 5.37018 5.43260 5.45209 5.55139 5.56633 5.56817 5.65657 5.66764 5.68673 5.77267 5.82992 5.90462 5.99198 6.19562 6.23247 6.27392 6.40839 6.48870 6.66322 6.77649 7.31573 8.01844 8.02905 8.45147 9.24201 9.97037 10.16192 11.44472 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.014969 B = 0.004003 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.140636 B = 6993.129593 C = 8112.275215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 H 0.076 0.924 4 C -0.130 4.130 5 C 0.103 3.897 6 N -0.597 5.597 7 C 0.553 3.447 8 O -0.523 6.523 9 C -0.218 4.218 10 C 0.334 3.666 11 C -0.190 4.190 12 F -0.190 7.190 13 F -0.193 7.193 14 C -0.123 4.123 15 C -0.147 4.147 16 C 0.117 3.883 17 C -0.105 4.105 18 H 0.073 0.927 19 C 0.165 3.835 20 N -0.757 5.757 21 C -0.244 4.244 22 H 0.090 0.910 23 C 0.007 3.993 24 N -0.934 5.934 25 Si 0.879 3.121 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.273 1.273 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.030 0.970 46 H 0.032 0.968 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.253 -8.475 -26.504 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 H 0.094 0.906 4 C -0.169 4.169 5 C -0.020 4.020 6 N -0.329 5.329 7 C 0.338 3.662 8 O -0.398 6.398 9 C -0.222 4.222 10 C 0.297 3.703 11 C -0.247 4.247 12 F -0.170 7.170 13 F -0.174 7.174 14 C -0.161 4.161 15 C -0.184 4.184 16 C -0.004 4.004 17 C -0.125 4.125 18 H 0.091 0.909 19 C 0.037 3.963 20 N -0.403 5.403 21 C -0.374 4.374 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.582 5.582 25 Si 0.709 3.291 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.199 1.199 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.093 0.907 44 H 0.114 0.886 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.194 0.806 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.212 -8.635 -25.783 27.192 hybrid contribution 0.728 -0.874 -0.147 1.147 sum 0.940 -9.509 -25.930 27.635 Atomic orbital electron populations 1.22000 0.95041 1.02066 1.02017 1.21063 0.96207 0.99417 0.93616 0.90610 1.21992 1.00975 0.95362 0.98541 1.22079 1.00746 0.93353 0.85807 1.48067 1.56004 1.20629 1.08200 1.18932 0.78095 0.81039 0.88100 1.90765 1.56860 1.59572 1.32627 1.22358 0.92339 1.09025 0.98481 1.20067 0.81516 0.88713 0.80012 1.22720 1.03827 0.95439 1.02761 1.93017 1.58426 1.70140 1.95452 1.93007 1.85574 1.92574 1.46277 1.23098 0.92021 0.97434 1.03504 1.23236 0.97155 0.97314 1.00694 1.21910 1.00455 0.92874 0.85154 1.21826 1.00713 0.94307 0.95656 0.90904 1.20668 0.96420 0.94968 0.84241 1.42775 1.57518 1.37373 1.02617 1.19042 1.24299 1.12180 0.81882 0.89207 1.24644 1.00187 0.98983 0.95106 1.69702 1.48292 1.43225 0.97026 0.86621 0.81492 0.83732 0.77240 1.21164 1.21671 1.19892 0.92439 0.91624 0.92968 0.91670 0.90705 0.89335 0.90711 0.88912 0.89719 0.88881 0.86760 0.87033 0.86871 0.87214 0.90720 0.88591 0.95184 0.95039 0.80609 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.12 37.16 0.30 -1.37 16 2 C -0.08 -0.96 2.71 -90.58 -0.25 -1.21 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.24 5.63 -26.61 -0.15 -1.39 16 5 C 0.10 1.06 4.14 -3.71 -0.02 1.05 16 6 N -0.60 -7.97 2.97 -172.50 -0.51 -8.48 16 7 C 0.55 7.88 6.15 -10.99 -0.07 7.81 16 8 O -0.52 -9.57 16.42 5.56 0.09 -9.48 16 9 C -0.22 -2.29 0.69 -155.66 -0.11 -2.39 16 10 C 0.33 3.24 2.00 -26.73 -0.05 3.19 16 11 C -0.19 -1.65 9.31 37.16 0.35 -1.30 16 12 F -0.19 -2.00 13.34 2.25 0.03 -1.97 16 13 F -0.19 -1.82 15.66 2.25 0.04 -1.78 16 14 C -0.12 -1.09 9.60 -26.69 -0.26 -1.35 16 15 C -0.15 -1.22 8.62 -26.69 -0.23 -1.45 16 16 C 0.12 1.85 5.05 -3.48 -0.02 1.83 16 17 C -0.11 -1.59 2.16 -90.27 -0.20 -1.78 16 18 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 19 C 0.16 3.11 5.18 -4.04 -0.02 3.09 16 20 N -0.76 -18.27 5.18 -59.91 -0.31 -18.58 16 21 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 22 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 23 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 24 N -0.93 -29.89 13.97 55.49 0.78 -29.12 16 25 Si 0.88 23.07 27.74 -169.99 -4.71 18.35 16 26 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 28 H -0.27 -6.96 6.52 56.52 0.37 -6.59 16 29 H 0.06 0.64 4.97 -51.93 -0.26 0.38 16 30 H 0.06 0.79 6.57 -51.93 -0.34 0.44 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.84 4.07 -51.92 -0.21 0.63 16 35 H 0.07 0.76 6.60 -51.93 -0.34 0.42 16 36 H 0.09 0.95 7.66 -51.93 -0.40 0.55 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.11 0.78 7.99 -51.93 -0.42 0.36 16 41 H 0.11 0.79 7.58 -51.93 -0.39 0.39 16 42 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 1.15 6.69 -51.93 -0.35 0.80 16 44 H 0.10 1.86 6.28 -51.93 -0.33 1.54 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.03 0.60 6.73 -51.93 -0.35 0.25 16 47 H 0.36 8.74 4.78 -40.82 -0.20 8.54 16 48 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -33.74 369.05 -7.41 -41.14 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.40 Total: 6.71 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.97 Total: -2.36 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.05 Total: -56.18 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.07 Total: -3.75 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.71 Total: 18.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.74 -7.41 -41.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133118339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.126 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds