Wall clock time and date at job start Tue Mar 31 2020 17:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.45757 * 2 1 4 4 C 1.53043 * 109.46146 * 240.02641 * 2 1 3 5 5 C 1.53195 * 109.30834 * 301.35527 * 4 2 1 6 6 N 1.46920 * 108.77777 * 305.36293 * 5 4 2 7 7 C 1.34777 * 120.63301 * 233.58577 * 6 5 4 8 8 O 1.21280 * 120.00010 * 187.16435 * 7 6 5 9 9 C 1.50700 * 119.99818 * 6.88828 * 7 6 5 10 10 C 1.52999 * 115.54913 * 282.64905 * 9 7 6 11 11 C 1.53006 * 109.46906 * 292.77971 * 10 9 7 12 12 F 1.39903 * 109.47204 * 52.77618 * 10 9 7 13 13 F 1.39896 * 109.47188 * 172.77922 * 10 9 7 14 14 C 1.53004 * 117.49784 * 136.98079 * 9 7 6 15 15 C 1.52998 * 117.49834 * 68.31847 * 9 7 6 16 16 C 1.46926 * 118.73499 * 53.86840 * 6 5 4 17 17 C 1.53044 * 109.44733 * 119.96127 * 2 1 3 18 18 H 1.09002 * 109.49575 * 178.60000 * 17 2 1 19 19 C 1.52998 * 109.49896 * 298.69787 * 17 2 1 20 20 N 1.46499 * 109.46828 * 185.00001 * 19 17 2 21 21 C 1.36942 * 119.99562 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00219 * 0.02562 * 21 20 19 23 23 C 1.38808 * 119.99833 * 179.97438 * 21 20 19 24 24 N 1.31621 * 120.00007 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00111 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47118 * 89.99597 * 25 23 21 27 27 H 1.48501 * 109.47225 * 209.99770 * 25 23 21 28 28 H 1.48503 * 109.47072 * 329.99758 * 25 23 21 29 29 H 1.09005 * 109.47052 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47723 * 299.97382 * 1 2 3 31 31 H 1.09004 * 109.47333 * 59.97602 * 1 2 3 32 32 H 1.08999 * 109.49434 * 181.40691 * 4 2 1 33 33 H 1.08998 * 109.52693 * 61.32260 * 4 2 1 34 34 H 1.09008 * 109.58522 * 185.57704 * 5 4 2 35 35 H 1.09000 * 109.70354 * 65.22910 * 5 4 2 36 36 H 1.08997 * 109.47411 * 56.16973 * 11 10 9 37 37 H 1.09003 * 109.46946 * 176.16325 * 11 10 9 38 38 H 1.08996 * 109.47183 * 296.15751 * 11 10 9 39 39 H 1.09000 * 117.49622 * 359.97438 * 14 9 7 40 40 H 1.08996 * 117.49790 * 145.01816 * 14 9 7 41 41 H 1.09000 * 117.49922 * 214.97785 * 15 9 7 42 42 H 1.09001 * 117.49777 * 359.97438 * 15 9 7 43 43 H 1.08998 * 109.59508 * 65.92224 * 16 6 5 44 44 H 1.09004 * 109.58609 * 186.35155 * 16 6 5 45 45 H 1.09001 * 109.47313 * 305.00181 * 19 17 2 46 46 H 1.09001 * 109.46935 * 65.00111 * 19 17 2 47 47 H 0.96992 * 120.00420 * 0.02562 * 20 19 17 48 48 H 0.97001 * 119.99990 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 1.4993 -2.1543 -1.2640 6 7 1.8621 -2.8089 0.0003 7 6 2.5149 -3.9880 0.0005 8 8 2.6942 -4.5817 1.0427 9 6 3.0167 -4.5716 -1.2952 10 6 1.9557 -5.2372 -2.1738 11 6 1.4341 -6.4963 -1.4783 12 9 0.8968 -4.3467 -2.3817 13 9 2.5211 -5.5849 -3.4053 14 6 4.4204 -5.1804 -1.2990 15 6 4.1632 -3.8443 -2.0004 16 6 1.4940 -2.1568 1.2644 17 6 2.0395 -0.7207 1.2503 18 1 3.1293 -0.7430 1.2386 19 6 1.5565 0.0196 2.4990 20 7 2.1418 -0.5996 3.6908 21 6 1.8511 -0.1027 4.9333 22 1 1.1901 0.7453 5.0347 23 6 2.4051 -0.6898 6.0625 24 7 2.1254 -0.2126 7.2569 25 14 3.5478 -2.1571 5.8872 26 1 4.9478 -1.6808 5.7520 27 1 3.4327 -3.0207 7.0898 28 1 3.1714 -2.9363 4.6804 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5134 0.8902 31 1 -0.3634 0.5142 -0.8898 32 1 3.1296 -0.7431 -1.2380 33 1 1.6965 -0.1939 -2.1401 34 1 1.9380 -2.7021 -2.0982 35 1 0.4145 -2.1369 -1.3685 36 1 1.0552 -6.2351 -0.4903 37 1 0.6307 -6.9328 -2.0717 38 1 2.2447 -7.2180 -1.3777 39 1 4.9811 -5.1584 -0.3645 40 1 4.5881 -6.0548 -1.9277 41 1 4.1618 -3.8403 -3.0904 42 1 4.5543 -2.9434 -1.5275 43 1 0.4087 -2.1373 1.3632 44 1 1.9292 -2.7062 2.0992 45 1 1.8640 1.0640 2.4440 46 1 0.4695 -0.0365 2.5570 47 1 2.7357 -1.3610 3.5997 48 1 2.5128 -0.6226 8.0460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133118339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:20 Heat of formation + Delta-G solvation = -115.357735 kcal Electronic energy + Delta-G solvation = -30940.471197 eV Core-core repulsion = 26666.500703 eV Total energy + Delta-G solvation = -4273.970494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.20774 -48.18112 -41.77052 -39.74936 -37.69526 -36.80346 -34.88441 -33.69152 -32.31562 -31.90113 -28.84163 -27.96899 -26.30959 -25.44461 -24.62821 -23.64621 -23.23292 -22.60348 -20.72963 -19.74620 -19.11664 -18.99012 -18.49574 -17.59674 -17.25410 -16.88993 -16.75372 -16.30867 -16.11670 -15.93388 -15.45584 -15.28316 -14.93745 -14.80925 -14.65604 -14.61144 -14.40477 -14.27495 -14.00042 -13.89113 -13.57716 -13.46926 -13.29473 -13.00773 -12.92004 -12.89331 -12.62908 -12.57879 -12.46756 -12.26450 -12.05566 -11.89588 -11.79869 -11.70891 -11.46966 -11.37463 -11.29620 -11.01436 -10.88613 -9.68247 -9.32462 -8.07802 -5.39741 1.23915 1.31151 1.34578 1.40887 1.72425 2.28512 2.41736 2.51706 2.96020 3.07880 3.24220 3.33890 3.43975 3.49309 3.73508 3.76745 3.81851 3.84719 3.97386 4.05140 4.23345 4.31031 4.40833 4.46971 4.51355 4.53751 4.55607 4.62003 4.70393 4.73535 4.75301 4.80291 4.88065 4.89759 4.97978 5.01285 5.05589 5.14318 5.20390 5.26252 5.36023 5.44579 5.56957 5.72276 6.17135 6.27072 6.94980 7.03118 7.80391 7.97064 9.13871 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.014969 B = 0.004003 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.140636 B = 6993.129593 C = 8112.275215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.079 4.079 3 H 0.085 0.915 4 C -0.123 4.123 5 C 0.100 3.900 6 N -0.594 5.594 7 C 0.548 3.452 8 O -0.574 6.574 9 C -0.230 4.230 10 C 0.338 3.662 11 C -0.190 4.190 12 F -0.195 7.195 13 F -0.187 7.187 14 C -0.121 4.121 15 C -0.129 4.129 16 C 0.123 3.877 17 C -0.093 4.093 18 H 0.065 0.935 19 C 0.161 3.839 20 N -0.761 5.761 21 C -0.231 4.231 22 H 0.063 0.937 23 C -0.055 4.055 24 N -0.980 5.980 25 Si 0.944 3.056 26 H -0.276 1.276 27 H -0.292 1.292 28 H -0.267 1.267 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.109 0.891 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.032 0.968 46 H 0.033 0.967 47 H 0.361 0.639 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 -8.915 -30.446 31.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.098 4.098 3 H 0.103 0.897 4 C -0.161 4.161 5 C -0.021 4.021 6 N -0.325 5.325 7 C 0.335 3.665 8 O -0.453 6.453 9 C -0.234 4.234 10 C 0.301 3.699 11 C -0.248 4.248 12 F -0.175 7.175 13 F -0.168 7.168 14 C -0.158 4.158 15 C -0.166 4.166 16 C 0.000 4.000 17 C -0.112 4.112 18 H 0.083 0.917 19 C 0.035 3.965 20 N -0.407 5.407 21 C -0.362 4.362 22 H 0.081 0.919 23 C -0.247 4.247 24 N -0.631 5.631 25 Si 0.772 3.228 26 H -0.202 1.202 27 H -0.219 1.219 28 H -0.193 1.193 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.127 0.873 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.194 0.806 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.868 -9.051 -29.809 31.164 hybrid contribution 0.438 -0.664 1.044 1.313 sum 1.306 -9.715 -28.765 30.389 Atomic orbital electron populations 1.21978 0.94455 1.01929 1.02535 1.21063 0.96629 0.99604 0.92506 0.89674 1.21986 1.01198 0.94456 0.98458 1.22320 1.01348 0.93939 0.84517 1.48136 1.55477 1.20521 1.08351 1.19559 0.77296 0.80738 0.88900 1.90732 1.58788 1.60944 1.34868 1.22222 0.93259 1.10753 0.97187 1.20002 0.81090 0.88742 0.80044 1.22736 1.04817 0.95481 1.01759 1.93004 1.58672 1.70383 1.95485 1.93018 1.85474 1.92493 1.45797 1.23198 0.90350 0.98866 1.03404 1.23374 0.94587 0.96896 1.01730 1.21618 1.00048 0.92904 0.85409 1.21688 1.00087 0.93815 0.95626 0.91703 1.20866 0.96246 0.95227 0.84129 1.42853 1.57706 1.37465 1.02665 1.19074 1.22520 1.10774 0.83813 0.91856 1.25342 1.02469 1.02068 0.94852 1.69851 1.50249 1.45127 0.97841 0.85574 0.79734 0.80379 0.77066 1.20243 1.21901 1.19254 0.92897 0.93257 0.90333 0.91291 0.87479 0.87892 0.90124 0.91048 0.88102 0.87699 0.88246 0.84801 0.84627 0.87268 0.90770 0.92685 0.94953 0.94900 0.80596 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.12 71.98 0.58 -2.35 16 2 C -0.08 -1.61 2.71 -10.77 -0.03 -1.64 16 3 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.12 -1.87 5.63 30.67 0.17 -1.70 16 5 C 0.10 1.79 4.14 86.36 0.36 2.14 16 6 N -0.59 -15.31 2.97 -818.06 -2.43 -17.73 16 7 C 0.55 15.40 6.15 87.66 0.54 15.94 16 8 O -0.57 -21.65 16.42 -3.03 -0.05 -21.70 16 9 C -0.23 -4.40 0.69 -52.93 -0.04 -4.44 16 10 C 0.34 5.77 2.00 30.60 0.06 5.83 16 11 C -0.19 -3.02 9.31 71.98 0.67 -2.35 16 12 F -0.19 -3.61 13.34 44.97 0.60 -3.01 16 13 F -0.19 -2.87 15.66 44.97 0.70 -2.17 16 14 C -0.12 -1.89 9.60 30.62 0.29 -1.60 16 15 C -0.13 -1.75 8.62 30.62 0.26 -1.49 16 16 C 0.12 3.89 5.05 86.51 0.44 4.33 16 17 C -0.09 -2.72 2.16 -10.57 -0.02 -2.74 16 18 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 19 C 0.16 6.12 5.18 86.38 0.45 6.57 16 20 N -0.76 -37.26 5.18 -343.45 -1.78 -39.04 16 21 C -0.23 -13.61 10.47 84.03 0.88 -12.73 16 22 H 0.06 4.01 8.06 -2.91 -0.02 3.99 16 23 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 24 N -0.98 -64.41 13.97 21.65 0.30 -64.10 16 25 Si 0.94 48.89 27.74 68.60 1.90 50.79 16 26 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.29 -15.16 7.11 99.48 0.71 -14.46 16 28 H -0.27 -13.42 6.52 99.48 0.65 -12.77 16 29 H 0.05 1.07 4.97 -2.38 -0.01 1.06 16 30 H 0.05 1.11 6.57 -2.39 -0.02 1.10 16 31 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 1.60 4.07 -2.38 -0.01 1.59 16 35 H 0.08 1.40 6.60 -2.39 -0.02 1.38 16 36 H 0.07 1.46 7.66 -2.39 -0.02 1.44 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.13 1.47 7.99 -2.39 -0.02 1.45 16 41 H 0.14 1.27 7.58 -2.39 -0.02 1.25 16 42 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 2.31 6.69 -2.39 -0.02 2.30 16 44 H 0.05 2.21 6.28 -2.39 -0.01 2.20 16 45 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.03 1.26 6.73 -2.39 -0.02 1.24 16 47 H 0.36 17.66 4.78 -92.71 -0.44 17.22 16 48 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 Total: -1.00 -75.69 369.05 4.81 -70.87 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.48 Total: 25.24 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 5.09 Total: 0.85 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -3.90 Total: -120.88 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.05 Total: -21.70 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 1.30 Total: -5.18 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 1.90 Total: 50.79 kcal Total: -75.69 4.81 -70.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133118339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.485 kcal (2) G-P(sol) polarization free energy of solvation -75.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds