Wall clock time and date at job start Tue Mar 31 2020 17:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.45167 * 2 1 4 4 C 1.53042 * 109.46043 * 119.96824 * 2 1 3 5 5 C 1.53187 * 109.31204 * 58.65255 * 4 2 1 6 6 N 1.46921 * 108.77772 * 54.63621 * 5 4 2 7 7 C 1.34783 * 120.63129 * 126.36585 * 6 5 4 8 8 O 1.21283 * 119.99616 * 175.02762 * 7 6 5 9 9 C 1.50699 * 120.00102 * 355.03396 * 7 6 5 10 10 C 1.52998 * 115.54584 * 278.96000 * 9 7 6 11 11 C 1.53009 * 109.47255 * 294.57623 * 10 9 7 12 12 F 1.39904 * 109.47544 * 54.57804 * 10 9 7 13 13 F 1.39906 * 109.47071 * 174.57886 * 10 9 7 14 14 C 1.52992 * 117.50330 * 133.25058 * 9 7 6 15 15 C 1.52993 * 117.49983 * 64.62349 * 9 7 6 16 16 C 1.46925 * 118.74213 * 306.39158 * 6 5 4 17 17 C 1.53044 * 109.45715 * 240.03220 * 2 1 3 18 18 H 1.09006 * 109.51912 * 181.37578 * 17 2 1 19 19 C 1.53001 * 109.49448 * 61.30276 * 17 2 1 20 20 N 1.46499 * 109.46979 * 175.16137 * 19 17 2 21 21 C 1.36933 * 120.00090 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99944 * 359.72336 * 21 20 19 23 23 C 1.38813 * 120.00012 * 179.72104 * 21 20 19 24 24 N 1.31619 * 120.00383 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00048 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47079 * 90.00230 * 25 23 21 27 27 H 1.48498 * 109.47298 * 210.00202 * 25 23 21 28 28 H 1.48500 * 109.46949 * 330.00327 * 25 23 21 29 29 H 1.09003 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47109 * 299.96453 * 1 2 3 31 31 H 1.09001 * 109.46743 * 59.96585 * 1 2 3 32 32 H 1.09005 * 109.49386 * 298.70124 * 4 2 1 33 33 H 1.08994 * 109.49843 * 178.60596 * 4 2 1 34 34 H 1.09000 * 109.58825 * 294.84934 * 5 4 2 35 35 H 1.09004 * 109.70542 * 174.49148 * 5 4 2 36 36 H 1.09002 * 109.46479 * 55.82517 * 11 10 9 37 37 H 1.08997 * 109.46997 * 175.81992 * 11 10 9 38 38 H 1.09000 * 109.46813 * 295.82389 * 11 10 9 39 39 H 1.09003 * 117.49917 * 359.97438 * 14 9 7 40 40 H 1.09002 * 117.50300 * 145.01606 * 14 9 7 41 41 H 1.09003 * 117.50504 * 214.98233 * 15 9 7 42 42 H 1.08996 * 117.50094 * 0.02562 * 15 9 7 43 43 H 1.09006 * 109.58707 * 293.82181 * 16 6 5 44 44 H 1.08995 * 109.59001 * 173.39381 * 16 6 5 45 45 H 1.08988 * 109.47425 * 55.15634 * 19 17 2 46 46 H 1.09006 * 109.46495 * 295.15338 * 19 17 2 47 47 H 0.97002 * 120.00069 * 359.71930 * 20 19 17 48 48 H 0.96992 * 120.00418 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 1.4996 -2.1541 1.2642 6 7 1.8625 -2.8089 0.0000 7 6 2.5164 -3.9874 0.0000 8 8 2.7307 -4.5619 -1.0465 9 6 2.9810 -4.5914 1.3001 10 6 4.2901 -4.0294 1.8580 11 6 5.4401 -4.3801 0.9117 12 9 4.1890 -2.6388 1.9738 13 9 4.5369 -4.5855 3.1179 14 6 2.6932 -6.0759 1.5323 15 6 1.9085 -5.0144 2.3057 16 6 1.4996 -2.1542 -1.2643 17 6 2.0398 -0.7208 -1.2501 18 1 3.1296 -0.7428 -1.2389 19 6 1.5569 0.0195 -2.4990 20 7 2.1392 -0.6022 -3.6909 21 6 1.8473 -0.1066 -4.9336 22 1 1.1842 0.7398 -5.0353 23 6 2.4037 -0.6920 -6.0625 24 7 3.2115 -1.7238 -5.9387 25 14 2.0049 -0.0164 -7.7579 26 1 2.9937 1.0314 -8.1183 27 1 2.0627 -1.1153 -8.7549 28 1 0.6415 0.5720 -7.7480 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8903 31 1 -0.3633 0.5144 -0.8897 32 1 1.6958 -0.1934 2.1398 33 1 3.1296 -0.7429 1.2383 34 1 0.4146 -2.1347 1.3673 35 1 1.9361 -2.7033 2.0985 36 1 5.2131 -4.0106 -0.0884 37 1 6.3596 -3.9172 1.2700 38 1 5.5668 -5.4622 0.8792 39 1 2.1673 -6.6158 0.7448 40 1 3.4366 -6.6528 2.0825 41 1 2.1355 -4.8929 3.3649 42 1 0.8667 -4.8564 2.0268 43 1 0.4146 -2.1347 -1.3674 44 1 1.9382 -2.7018 -2.0984 45 1 1.8666 1.0630 -2.4453 46 1 0.4696 -0.0345 -2.5555 47 1 2.7346 -1.3626 -3.5996 48 1 3.6005 -2.1326 -6.7275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133118340.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:24 Heat of formation + Delta-G solvation = -100.008316 kcal Electronic energy + Delta-G solvation = -30952.091567 eV Core-core repulsion = 26678.786674 eV Total energy + Delta-G solvation = -4273.304893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.25693 -47.23506 -40.61301 -38.57096 -36.67204 -34.89209 -33.45654 -31.84046 -31.46035 -29.82979 -27.70757 -26.28386 -25.04870 -24.43671 -23.21461 -22.80662 -22.17866 -21.11484 -19.39209 -18.55065 -17.66770 -17.48173 -17.01935 -16.53419 -16.18070 -15.88303 -15.15431 -14.91017 -14.80950 -14.48024 -14.32254 -13.98138 -13.74324 -13.58190 -13.50159 -13.24158 -13.12048 -12.92333 -12.74692 -12.61417 -12.45647 -12.36142 -12.03356 -11.90306 -11.80369 -11.63418 -11.25709 -10.98255 -10.95320 -10.86979 -10.77197 -10.60900 -10.56112 -10.25916 -10.14601 -9.94697 -9.69043 -9.55134 -8.82543 -8.45083 -6.86340 -5.69900 -2.99368 2.39687 2.84946 3.13382 3.43846 3.47140 3.51806 3.54011 3.85464 4.05432 4.22254 4.25987 4.61788 4.63034 4.71177 4.80575 4.91492 4.96967 5.12949 5.20881 5.23446 5.31366 5.33476 5.44079 5.46819 5.51087 5.57078 5.63628 5.70526 5.71741 5.76061 5.77551 5.84142 5.95906 6.01661 6.10258 6.17030 6.36830 6.37693 6.40670 6.58850 6.65277 6.80233 6.92301 7.45796 7.74673 8.17949 8.47977 9.58985 10.17098 10.51284 11.52538 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015575 B = 0.003627 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.340800 B = 7718.481117 C = 8598.335235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 H 0.073 0.927 4 C -0.128 4.128 5 C 0.105 3.895 6 N -0.597 5.597 7 C 0.552 3.448 8 O -0.517 6.517 9 C -0.215 4.215 10 C 0.335 3.665 11 C -0.191 4.191 12 F -0.188 7.188 13 F -0.196 7.196 14 C -0.124 4.124 15 C -0.152 4.152 16 C 0.120 3.880 17 C -0.101 4.101 18 H 0.073 0.927 19 C 0.161 3.839 20 N -0.733 5.733 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.021 0.979 46 H 0.023 0.977 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.756 -5.004 23.086 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 H 0.092 0.908 4 C -0.166 4.166 5 C -0.017 4.017 6 N -0.329 5.329 7 C 0.337 3.663 8 O -0.392 6.392 9 C -0.219 4.219 10 C 0.298 3.702 11 C -0.249 4.249 12 F -0.169 7.169 13 F -0.177 7.177 14 C -0.161 4.161 15 C -0.189 4.189 16 C -0.001 4.001 17 C -0.121 4.121 18 H 0.092 0.908 19 C 0.033 3.967 20 N -0.378 5.378 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.088 0.912 44 H 0.120 0.880 45 H 0.038 0.962 46 H 0.041 0.959 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.721 -5.195 22.400 23.059 hybrid contribution 0.078 0.361 -0.751 0.837 sum -1.643 -4.834 21.649 22.243 Atomic orbital electron populations 1.21987 0.95322 1.01883 1.01754 1.21082 0.95912 0.99415 0.93996 0.90842 1.21948 1.01766 0.94767 0.98154 1.21851 0.99856 0.94083 0.85958 1.48059 1.56356 1.20370 1.08108 1.18899 0.78224 0.81052 0.88081 1.90788 1.55769 1.60486 1.32169 1.22359 0.98018 1.02488 0.99011 1.20029 0.94734 0.74841 0.80575 1.22733 0.96610 1.05005 1.00510 1.93036 1.97015 1.30518 1.96312 1.92998 1.95196 1.85276 1.44181 1.23080 1.02394 0.88359 1.02276 1.23234 0.96542 1.01727 0.97392 1.21799 1.00069 0.93027 0.85202 1.21682 1.00891 0.94266 0.95234 0.90829 1.20682 0.95996 0.94724 0.85329 1.42419 1.56846 1.37705 1.00803 1.19201 1.23091 1.11127 0.83798 0.91256 1.24742 1.00024 0.98323 0.97777 1.69668 1.35332 1.24347 1.28514 0.86218 0.77761 0.77764 0.84603 1.21789 1.21797 1.20799 0.92539 0.93161 0.91816 0.91074 0.90891 0.91356 0.89856 0.88619 0.89773 0.88990 0.86859 0.87061 0.86948 0.87314 0.91215 0.87953 0.96155 0.95913 0.78174 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.11 37.16 0.30 -1.44 16 2 C -0.08 -1.07 2.71 -90.57 -0.25 -1.32 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -1.41 5.43 -26.61 -0.14 -1.56 16 5 C 0.11 1.15 4.71 -3.72 -0.02 1.13 16 6 N -0.60 -8.45 2.97 -172.77 -0.51 -8.97 16 7 C 0.55 8.35 6.01 -10.98 -0.07 8.28 16 8 O -0.52 -10.02 16.44 5.55 0.09 -9.92 16 9 C -0.21 -2.42 0.72 -155.67 -0.11 -2.53 16 10 C 0.33 3.74 2.05 -26.73 -0.05 3.68 16 11 C -0.19 -2.05 9.31 37.16 0.35 -1.70 16 12 F -0.19 -2.31 13.26 2.25 0.03 -2.28 16 13 F -0.20 -2.06 15.65 2.25 0.04 -2.02 16 14 C -0.12 -1.13 9.62 -26.74 -0.26 -1.39 16 15 C -0.15 -1.28 7.79 -26.74 -0.21 -1.49 16 16 C 0.12 2.02 5.04 -3.71 -0.02 2.00 16 17 C -0.10 -1.66 2.15 -90.50 -0.19 -1.86 16 18 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 19 C 0.16 3.22 5.19 -4.04 -0.02 3.20 16 20 N -0.73 -18.90 5.37 -59.91 -0.32 -19.23 16 21 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 25 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 29 H 0.06 0.65 4.98 -51.93 -0.26 0.39 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.90 6.75 -51.93 -0.35 0.55 16 34 H 0.07 0.66 6.69 -51.93 -0.35 0.31 16 35 H 0.08 0.83 4.16 -51.93 -0.22 0.61 16 36 H 0.09 1.24 7.59 -51.93 -0.39 0.85 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.11 0.84 7.94 -51.93 -0.41 0.43 16 41 H 0.11 0.80 7.62 -51.93 -0.40 0.41 16 42 H 0.11 0.86 8.13 -51.93 -0.42 0.44 16 43 H 0.07 1.13 6.69 -51.93 -0.35 0.78 16 44 H 0.10 2.15 6.24 -51.93 -0.32 1.82 16 45 H 0.02 0.42 8.14 -51.94 -0.42 0.00 16 46 H 0.02 0.46 6.72 -51.93 -0.35 0.11 16 47 H 0.38 10.60 6.90 -40.82 -0.28 10.32 16 48 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -32.94 370.24 -7.71 -40.65 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.37 Total: 9.07 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -0.94 Total: -2.46 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.11 Total: -56.42 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.07 Total: -4.30 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.94 -7.71 -40.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133118340.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.363 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds