Wall clock time and date at job start Tue Mar 31 2020 17:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.45167 * 2 1 4 4 C 1.53042 * 109.46043 * 119.96824 * 2 1 3 5 5 C 1.53187 * 109.31204 * 58.65255 * 4 2 1 6 6 N 1.46921 * 108.77772 * 54.63621 * 5 4 2 7 7 C 1.34783 * 120.63129 * 126.36585 * 6 5 4 8 8 O 1.21283 * 119.99616 * 175.02762 * 7 6 5 9 9 C 1.50699 * 120.00102 * 355.03396 * 7 6 5 10 10 C 1.52998 * 115.54584 * 278.96000 * 9 7 6 11 11 C 1.53009 * 109.47255 * 294.57623 * 10 9 7 12 12 F 1.39904 * 109.47544 * 54.57804 * 10 9 7 13 13 F 1.39906 * 109.47071 * 174.57886 * 10 9 7 14 14 C 1.52992 * 117.50330 * 133.25058 * 9 7 6 15 15 C 1.52993 * 117.49983 * 64.62349 * 9 7 6 16 16 C 1.46925 * 118.74213 * 306.39158 * 6 5 4 17 17 C 1.53044 * 109.45715 * 240.03220 * 2 1 3 18 18 H 1.09006 * 109.51912 * 181.37578 * 17 2 1 19 19 C 1.53001 * 109.49448 * 61.30276 * 17 2 1 20 20 N 1.46499 * 109.46979 * 175.16137 * 19 17 2 21 21 C 1.36933 * 120.00090 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99944 * 359.72336 * 21 20 19 23 23 C 1.38813 * 120.00012 * 179.72104 * 21 20 19 24 24 N 1.31619 * 120.00383 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00048 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47079 * 90.00230 * 25 23 21 27 27 H 1.48498 * 109.47298 * 210.00202 * 25 23 21 28 28 H 1.48500 * 109.46949 * 330.00327 * 25 23 21 29 29 H 1.09003 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47109 * 299.96453 * 1 2 3 31 31 H 1.09001 * 109.46743 * 59.96585 * 1 2 3 32 32 H 1.09005 * 109.49386 * 298.70124 * 4 2 1 33 33 H 1.08994 * 109.49843 * 178.60596 * 4 2 1 34 34 H 1.09000 * 109.58825 * 294.84934 * 5 4 2 35 35 H 1.09004 * 109.70542 * 174.49148 * 5 4 2 36 36 H 1.09002 * 109.46479 * 55.82517 * 11 10 9 37 37 H 1.08997 * 109.46997 * 175.81992 * 11 10 9 38 38 H 1.09000 * 109.46813 * 295.82389 * 11 10 9 39 39 H 1.09003 * 117.49917 * 359.97438 * 14 9 7 40 40 H 1.09002 * 117.50300 * 145.01606 * 14 9 7 41 41 H 1.09003 * 117.50504 * 214.98233 * 15 9 7 42 42 H 1.08996 * 117.50094 * 0.02562 * 15 9 7 43 43 H 1.09006 * 109.58707 * 293.82181 * 16 6 5 44 44 H 1.08995 * 109.59001 * 173.39381 * 16 6 5 45 45 H 1.08988 * 109.47425 * 55.15634 * 19 17 2 46 46 H 1.09006 * 109.46495 * 295.15338 * 19 17 2 47 47 H 0.97002 * 120.00069 * 359.71930 * 20 19 17 48 48 H 0.96992 * 120.00418 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 1.4996 -2.1541 1.2642 6 7 1.8625 -2.8089 0.0000 7 6 2.5164 -3.9874 0.0000 8 8 2.7307 -4.5619 -1.0465 9 6 2.9810 -4.5914 1.3001 10 6 4.2901 -4.0294 1.8580 11 6 5.4401 -4.3801 0.9117 12 9 4.1890 -2.6388 1.9738 13 9 4.5369 -4.5855 3.1179 14 6 2.6932 -6.0759 1.5323 15 6 1.9085 -5.0144 2.3057 16 6 1.4996 -2.1542 -1.2643 17 6 2.0398 -0.7208 -1.2501 18 1 3.1296 -0.7428 -1.2389 19 6 1.5569 0.0195 -2.4990 20 7 2.1392 -0.6022 -3.6909 21 6 1.8473 -0.1066 -4.9336 22 1 1.1842 0.7398 -5.0353 23 6 2.4037 -0.6920 -6.0625 24 7 3.2115 -1.7238 -5.9387 25 14 2.0049 -0.0164 -7.7579 26 1 2.9937 1.0314 -8.1183 27 1 2.0627 -1.1153 -8.7549 28 1 0.6415 0.5720 -7.7480 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8903 31 1 -0.3633 0.5144 -0.8897 32 1 1.6958 -0.1934 2.1398 33 1 3.1296 -0.7429 1.2383 34 1 0.4146 -2.1347 1.3673 35 1 1.9361 -2.7033 2.0985 36 1 5.2131 -4.0106 -0.0884 37 1 6.3596 -3.9172 1.2700 38 1 5.5668 -5.4622 0.8792 39 1 2.1673 -6.6158 0.7448 40 1 3.4366 -6.6528 2.0825 41 1 2.1355 -4.8929 3.3649 42 1 0.8667 -4.8564 2.0268 43 1 0.4146 -2.1347 -1.3674 44 1 1.9382 -2.7018 -2.0984 45 1 1.8666 1.0630 -2.4453 46 1 0.4696 -0.0345 -2.5555 47 1 2.7346 -1.3626 -3.5996 48 1 3.6005 -2.1326 -6.7275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133118340.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:23 Heat of formation + Delta-G solvation = -120.474594 kcal Electronic energy + Delta-G solvation = -30952.979051 eV Core-core repulsion = 26678.786674 eV Total energy + Delta-G solvation = -4274.192377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.13949 -48.11808 -41.74484 -39.71388 -37.67959 -36.63116 -34.84201 -33.51128 -32.31533 -31.52303 -28.77746 -27.74541 -26.33642 -25.40814 -24.94313 -23.58982 -23.20176 -22.55497 -20.52750 -19.70485 -18.99230 -18.63285 -18.42847 -17.55124 -17.24096 -16.91332 -16.76526 -16.24784 -15.94152 -15.71999 -15.51743 -15.20670 -15.08493 -14.80863 -14.58722 -14.36161 -14.34301 -14.19352 -14.01236 -13.79097 -13.55098 -13.33006 -13.05146 -13.00725 -12.87304 -12.80207 -12.65611 -12.55511 -12.44992 -12.15467 -12.01925 -11.91451 -11.76304 -11.70320 -11.44014 -11.36550 -11.23254 -10.93800 -10.81809 -9.64166 -9.01276 -7.95188 -5.25540 1.27225 1.44768 1.47596 1.56082 1.79593 2.30686 2.54819 2.54846 2.98128 3.12991 3.34932 3.37962 3.45810 3.67614 3.76812 3.83622 3.86110 3.87022 4.08086 4.17384 4.27862 4.36754 4.42150 4.50676 4.53251 4.56234 4.57571 4.62119 4.69421 4.77174 4.79826 4.83658 4.89254 4.90635 4.99112 5.03943 5.09723 5.20013 5.24377 5.29861 5.40255 5.46801 5.48954 5.60593 6.25393 6.32401 7.01504 7.30978 8.07155 8.29571 9.28413 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015575 B = 0.003627 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.340800 B = 7718.481117 C = 8598.335235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 H 0.079 0.921 4 C -0.123 4.123 5 C 0.101 3.899 6 N -0.594 5.594 7 C 0.547 3.453 8 O -0.574 6.574 9 C -0.232 4.232 10 C 0.339 3.661 11 C -0.192 4.192 12 F -0.195 7.195 13 F -0.186 7.186 14 C -0.121 4.121 15 C -0.127 4.127 16 C 0.130 3.870 17 C -0.089 4.089 18 H 0.047 0.953 19 C 0.160 3.840 20 N -0.748 5.748 21 C -0.246 4.246 22 H 0.079 0.921 23 C -0.078 4.078 24 N -0.972 5.972 25 Si 0.976 3.024 26 H -0.286 1.286 27 H -0.297 1.297 28 H -0.266 1.266 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.107 0.893 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.117 0.883 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.023 0.977 46 H 0.032 0.968 47 H 0.370 0.630 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.253 -4.131 26.060 26.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 H 0.097 0.903 4 C -0.161 4.161 5 C -0.020 4.020 6 N -0.325 5.325 7 C 0.334 3.666 8 O -0.453 6.453 9 C -0.236 4.236 10 C 0.303 3.697 11 C -0.250 4.250 12 F -0.176 7.176 13 F -0.167 7.167 14 C -0.158 4.158 15 C -0.164 4.164 16 C 0.007 3.993 17 C -0.108 4.108 18 H 0.066 0.934 19 C 0.034 3.966 20 N -0.391 5.391 21 C -0.377 4.377 22 H 0.097 0.903 23 C -0.270 4.270 24 N -0.623 5.623 25 Si 0.804 3.196 26 H -0.213 1.213 27 H -0.224 1.224 28 H -0.191 1.191 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.125 0.875 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.135 0.865 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.041 0.959 46 H 0.050 0.950 47 H 0.201 0.799 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.257 -4.267 25.443 26.003 hybrid contribution 0.532 0.110 -1.620 1.709 sum -2.725 -4.156 23.823 24.336 Atomic orbital electron populations 1.21954 0.93788 1.02147 1.02616 1.21065 0.97063 0.99229 0.92441 0.90287 1.21938 1.00895 0.94818 0.98437 1.22160 1.01421 0.93937 0.84476 1.48135 1.55840 1.20189 1.08331 1.19568 0.77294 0.80803 0.88910 1.90756 1.57816 1.62078 1.34648 1.22177 0.99429 1.03978 0.98065 1.19914 0.94570 0.74463 0.80789 1.22735 0.97346 1.06020 0.98883 1.93021 1.97036 1.31182 1.96362 1.93012 1.95130 1.85094 1.43468 1.23207 1.02908 0.87447 1.02244 1.23424 0.96066 0.99168 0.97711 1.21428 0.99819 0.92713 0.85308 1.21528 0.99221 0.94240 0.95846 0.93433 1.20858 0.96080 0.94743 0.84927 1.42676 1.56866 1.37518 1.01994 1.19668 1.22268 1.10814 0.84988 0.90307 1.25635 1.00501 0.98961 1.01877 1.69861 1.37097 1.26173 1.29163 0.85106 0.78220 0.76825 0.79406 1.21286 1.22356 1.19051 0.92537 0.90104 0.93180 0.87500 0.92393 0.89012 0.88243 0.91742 0.88409 0.87571 0.87938 0.85040 0.84646 0.86476 0.90562 0.93100 0.95917 0.94989 0.79866 0.94123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.11 71.98 0.58 -2.37 16 2 C -0.08 -1.85 2.71 -10.76 -0.03 -1.88 16 3 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 4 C -0.12 -2.36 5.43 30.67 0.17 -2.20 16 5 C 0.10 1.94 4.71 86.36 0.41 2.35 16 6 N -0.59 -16.90 2.97 -818.92 -2.43 -19.34 16 7 C 0.55 17.05 6.01 87.66 0.53 17.57 16 8 O -0.57 -23.99 16.44 -3.04 -0.05 -24.04 16 9 C -0.23 -5.00 0.72 -52.93 -0.04 -5.03 16 10 C 0.34 7.13 2.05 30.60 0.06 7.20 16 11 C -0.19 -4.15 9.31 71.99 0.67 -3.48 16 12 F -0.20 -4.53 13.26 44.97 0.60 -3.93 16 13 F -0.19 -3.40 15.65 44.97 0.70 -2.70 16 14 C -0.12 -2.02 9.62 30.59 0.29 -1.72 16 15 C -0.13 -1.75 7.79 30.59 0.24 -1.51 16 16 C 0.13 4.57 5.04 86.36 0.43 5.01 16 17 C -0.09 -2.99 2.15 -10.72 -0.02 -3.01 16 18 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 19 C 0.16 6.57 5.19 86.38 0.45 7.02 16 20 N -0.75 -40.22 5.37 -343.46 -1.85 -42.06 16 21 C -0.25 -14.28 9.99 84.03 0.84 -13.44 16 22 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 23 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 24 N -0.97 -63.05 13.06 21.65 0.28 -62.77 16 25 Si 0.98 47.80 29.55 68.60 2.03 49.83 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 29 H 0.06 1.13 4.98 -2.39 -0.01 1.12 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.14 6.57 -2.39 -0.02 1.13 16 32 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.06 1.33 6.75 -2.39 -0.02 1.31 16 34 H 0.09 1.40 6.69 -2.39 -0.02 1.38 16 35 H 0.10 1.64 4.16 -2.39 -0.01 1.63 16 36 H 0.06 1.81 7.59 -2.39 -0.02 1.79 16 37 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.11 1.92 8.14 -2.39 -0.02 1.91 16 39 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.13 1.64 7.94 -2.39 -0.02 1.63 16 41 H 0.14 1.31 7.62 -2.39 -0.02 1.29 16 42 H 0.12 1.45 8.13 -2.39 -0.02 1.43 16 43 H 0.08 2.53 6.69 -2.38 -0.02 2.52 16 44 H 0.05 2.34 6.24 -2.39 -0.01 2.32 16 45 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.03 1.27 6.72 -2.38 -0.02 1.26 16 47 H 0.37 21.82 6.90 -92.71 -0.64 21.18 16 48 H 0.25 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -75.92 370.24 4.67 -71.25 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.34 Total: 33.46 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 5.05 Total: 0.30 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -4.00 Total: -124.17 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 9 Polarization: -7.93 SS G_CDS: 1.30 Total: -6.63 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -75.92 4.67 -71.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133118340.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.228 kcal (2) G-P(sol) polarization free energy of solvation -75.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds