Wall clock time and date at job start Tue Mar 31 2020 17:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.46115 * 2 1 4 4 C 1.53042 * 109.45695 * 119.97235 * 2 1 3 5 5 C 1.53189 * 109.31087 * 181.37210 * 4 2 1 6 6 N 1.46927 * 108.77597 * 305.36195 * 5 4 2 7 7 C 1.34772 * 120.63308 * 233.58497 * 6 5 4 8 8 O 1.21289 * 120.00317 * 176.31126 * 7 6 5 9 9 C 1.50699 * 120.00151 * 356.31467 * 7 6 5 10 10 C 1.53000 * 115.55257 * 81.81989 * 9 7 6 11 11 C 1.53005 * 109.46913 * 61.29869 * 10 9 7 12 12 F 1.39896 * 109.46998 * 301.30137 * 10 9 7 13 13 F 1.39902 * 109.47316 * 181.30063 * 10 9 7 14 14 C 1.53004 * 117.49872 * 227.49500 * 9 7 6 15 15 C 1.53005 * 117.49689 * 296.15551 * 9 7 6 16 16 C 1.46927 * 118.73628 * 53.86326 * 6 5 4 17 17 C 1.53042 * 109.44876 * 240.03109 * 2 1 3 18 18 H 1.09005 * 109.49939 * 298.60543 * 17 2 1 19 19 C 1.53001 * 109.49623 * 58.67229 * 17 2 1 20 20 N 1.46503 * 109.46796 * 185.00002 * 19 17 2 21 21 C 1.36942 * 119.99789 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00046 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99787 * 180.02562 * 21 20 19 24 24 N 1.31616 * 119.99543 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00102 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47070 * 90.00498 * 25 23 21 27 27 H 1.48502 * 109.46787 * 210.00217 * 25 23 21 28 28 H 1.48494 * 109.47341 * 330.00211 * 25 23 21 29 29 H 1.08994 * 109.47342 * 300.03182 * 1 2 3 30 30 H 1.09009 * 109.47006 * 60.03110 * 1 2 3 31 31 H 1.09003 * 109.47588 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.49654 * 61.42052 * 4 2 1 33 33 H 1.09000 * 109.49503 * 301.31751 * 4 2 1 34 34 H 1.08997 * 109.58821 * 185.57715 * 5 4 2 35 35 H 1.09006 * 109.59101 * 65.14989 * 5 4 2 36 36 H 1.08998 * 109.47138 * 294.73413 * 11 10 9 37 37 H 1.08999 * 109.47019 * 174.73635 * 11 10 9 38 38 H 1.08994 * 109.46956 * 54.73113 * 11 10 9 39 39 H 1.09003 * 117.49517 * 214.99941 * 14 9 7 40 40 H 1.08991 * 117.49886 * 0.02562 * 14 9 7 41 41 H 1.08995 * 117.49591 * 359.97084 * 15 9 7 42 42 H 1.09001 * 117.49901 * 144.97271 * 15 9 7 43 43 H 1.08996 * 109.59081 * 65.92655 * 16 6 5 44 44 H 1.08997 * 109.58492 * 186.35422 * 16 6 5 45 45 H 1.08997 * 109.47201 * 304.99833 * 19 17 2 46 46 H 1.08997 * 109.47276 * 64.99881 * 19 17 2 47 47 H 0.97004 * 120.00260 * 359.97438 * 20 19 17 48 48 H 0.97001 * 119.99789 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 1.2500 5 6 3.5712 -0.6890 1.2641 6 7 4.0675 -1.2494 -0.0002 7 6 4.9615 -2.2579 -0.0003 8 8 5.3130 -2.7567 -1.0485 9 6 5.5245 -2.7660 1.3020 10 6 4.6427 -3.7615 2.0585 11 6 4.4258 -5.0075 1.1974 12 9 3.4073 -3.1690 2.3410 13 9 5.2702 -4.1248 3.2549 14 6 7.0402 -2.9557 1.3902 15 6 6.3689 -1.7972 2.1323 16 6 3.5753 -0.6853 -1.2644 17 6 2.0395 -0.7209 -1.2501 18 1 1.6968 -1.7556 -1.2386 19 6 1.5025 -0.0188 -2.4990 20 7 1.8911 -0.7772 -3.6907 21 6 1.5205 -0.3372 -4.9333 22 1 0.9412 0.5687 -5.0349 23 6 1.8883 -1.0560 -6.0624 24 7 1.5315 -0.6333 -7.2567 25 14 2.8895 -2.6232 -5.8868 26 1 1.9728 -3.7836 -5.7510 27 1 3.7416 -2.8036 -7.0896 28 1 3.7499 -2.5283 -4.6803 29 1 -0.3634 0.5143 0.8896 30 1 -0.3633 0.5134 -0.8903 31 1 -0.3634 -1.0277 0.0005 32 1 1.6975 -1.7557 1.2382 33 1 1.6573 -0.2207 2.1398 34 1 3.9415 -1.2850 2.0982 35 1 3.9145 0.3404 1.3671 36 1 3.8544 -4.7399 0.3086 37 1 3.8769 -5.7544 1.7709 38 1 5.3914 -5.4157 0.8993 39 1 7.4090 -3.7898 1.9873 40 1 7.6301 -2.7126 0.5066 41 1 6.5176 -0.7927 1.7364 42 1 6.2959 -1.8689 3.2175 43 1 3.9187 0.3444 -1.3634 44 1 3.9482 -1.2788 -2.0991 45 1 0.4154 0.0394 -2.4439 46 1 1.9177 0.9873 -2.5571 47 1 2.4117 -1.5907 -3.5995 48 1 1.7889 -1.1354 -8.0458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133118341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:27 Heat of formation + Delta-G solvation = -98.220724 kcal Electronic energy + Delta-G solvation = -30915.931271 eV Core-core repulsion = 26642.703894 eV Total energy + Delta-G solvation = -4273.227377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.42182 -47.39790 -40.64228 -38.52395 -36.77216 -35.12450 -33.77538 -31.91870 -31.61766 -30.25013 -28.41580 -26.39539 -25.05412 -23.80160 -23.06132 -22.80166 -22.04499 -21.10025 -19.90026 -19.17244 -18.03635 -17.71525 -17.47022 -16.68875 -16.29755 -15.98732 -15.14338 -14.93280 -14.80028 -14.42845 -14.20093 -14.08023 -14.03114 -13.66113 -13.51227 -13.48130 -13.15215 -13.00691 -12.85836 -12.72811 -12.58645 -12.49829 -12.13936 -11.97323 -11.93618 -11.73777 -11.65887 -11.25583 -11.08317 -10.98454 -10.84596 -10.67285 -10.65053 -10.32060 -10.14489 -10.04930 -9.78157 -9.52825 -8.86461 -8.63820 -7.18385 -5.73095 -3.08357 2.26128 2.70449 3.01819 3.30974 3.44122 3.50973 3.52691 3.72538 3.89988 4.11743 4.16352 4.50446 4.58228 4.64892 4.68072 4.79976 4.82870 5.01699 5.07485 5.14326 5.19622 5.22337 5.34275 5.39263 5.41616 5.50272 5.56585 5.60138 5.61783 5.62525 5.67939 5.75247 5.79004 5.86646 5.95971 6.02112 6.12264 6.26752 6.34129 6.40068 6.48052 6.72625 6.78474 7.30035 8.02233 8.02818 8.45986 9.25236 9.98133 10.17467 11.45243 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.004141 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.722838 B = 6759.798008 C = 7878.754249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.126 4.126 5 C 0.100 3.900 6 N -0.598 5.598 7 C 0.553 3.447 8 O -0.522 6.522 9 C -0.217 4.217 10 C 0.334 3.666 11 C -0.191 4.191 12 F -0.187 7.187 13 F -0.194 7.194 14 C -0.123 4.123 15 C -0.149 4.149 16 C 0.117 3.883 17 C -0.105 4.105 18 H 0.074 0.926 19 C 0.163 3.837 20 N -0.757 5.757 21 C -0.244 4.244 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.935 5.935 25 Si 0.879 3.121 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.273 1.273 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.037 0.963 46 H 0.027 0.973 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.458 -3.169 26.418 27.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.164 4.164 5 C -0.023 4.023 6 N -0.330 5.330 7 C 0.338 3.662 8 O -0.397 6.397 9 C -0.221 4.221 10 C 0.298 3.702 11 C -0.248 4.248 12 F -0.168 7.168 13 F -0.174 7.174 14 C -0.161 4.161 15 C -0.186 4.186 16 C -0.004 4.004 17 C -0.125 4.125 18 H 0.092 0.908 19 C 0.035 3.965 20 N -0.403 5.403 21 C -0.374 4.374 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.583 5.583 25 Si 0.709 3.291 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.198 1.198 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.090 0.910 44 H 0.116 0.884 45 H 0.054 0.946 46 H 0.045 0.955 47 H 0.194 0.806 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.519 -3.281 25.695 26.973 hybrid contribution 0.534 -1.066 0.146 1.201 sum 8.053 -4.346 25.841 27.413 Atomic orbital electron populations 1.21885 0.94782 1.02008 1.01876 1.21091 0.96128 0.99358 0.93730 0.90945 1.21949 0.94359 1.01830 0.98247 1.21985 0.95144 0.99085 0.86093 1.48095 1.42101 1.34583 1.08219 1.18938 0.79267 0.79763 0.88209 1.90772 1.59554 1.57102 1.32296 1.22353 0.96141 1.04760 0.98842 1.20027 0.77148 0.92121 0.80927 1.22725 1.05761 0.95406 1.00911 1.93001 1.44378 1.85059 1.94385 1.93006 1.82672 1.92439 1.49326 1.23105 0.89261 1.00666 1.03038 1.23238 1.00083 0.95894 0.99378 1.21901 0.94060 0.99185 0.85291 1.21845 0.94153 1.00871 0.95586 0.90779 1.20713 0.97455 0.94060 0.84264 1.42780 1.66114 1.28781 1.02598 1.19043 1.28491 1.07935 0.81894 0.89224 1.24640 1.00558 0.98623 0.95107 1.69702 1.50940 1.40612 0.97028 0.86624 0.80610 0.84669 0.77217 1.21151 1.21709 1.19840 0.93084 0.91511 0.92777 0.91158 0.90823 0.88995 0.91576 0.88961 0.89689 0.88806 0.86935 0.86859 0.87230 0.86940 0.90992 0.88383 0.94577 0.95528 0.80577 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.82 37.16 0.33 -1.36 16 2 C -0.08 -0.99 2.23 -90.58 -0.20 -1.19 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -1.28 5.12 -26.61 -0.14 -1.42 16 5 C 0.10 1.01 5.19 -3.71 -0.02 0.99 16 6 N -0.60 -7.92 2.97 -172.50 -0.51 -8.43 16 7 C 0.55 7.82 6.08 -10.99 -0.07 7.75 16 8 O -0.52 -9.53 16.43 5.55 0.09 -9.44 16 9 C -0.22 -2.26 0.75 -155.66 -0.12 -2.38 16 10 C 0.33 3.38 2.06 -26.73 -0.05 3.33 16 11 C -0.19 -1.84 9.13 37.16 0.34 -1.50 16 12 F -0.19 -2.04 13.20 2.25 0.03 -2.01 16 13 F -0.19 -1.88 15.63 2.25 0.04 -1.84 16 14 C -0.12 -1.05 9.62 -26.69 -0.26 -1.31 16 15 C -0.15 -1.16 8.32 -26.69 -0.22 -1.38 16 16 C 0.12 1.84 5.55 -3.49 -0.02 1.82 16 17 C -0.10 -1.61 1.93 -90.27 -0.17 -1.78 16 18 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 19 C 0.16 3.09 5.41 -4.04 -0.02 3.07 16 20 N -0.76 -18.33 5.18 -59.91 -0.31 -18.64 16 21 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 22 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 24 N -0.93 -29.94 13.97 55.49 0.78 -29.17 16 25 Si 0.88 23.15 27.74 -169.99 -4.71 18.43 16 26 H -0.28 -7.45 7.11 56.52 0.40 -7.04 16 27 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 28 H -0.27 -6.98 6.52 56.52 0.37 -6.61 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.83 6.29 -51.92 -0.33 0.51 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.80 7.49 -51.93 -0.39 0.41 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.86 3.76 -51.93 -0.20 0.66 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 1.05 7.77 -51.93 -0.40 0.65 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.11 0.79 7.82 -51.93 -0.41 0.38 16 40 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.11 0.73 7.74 -51.93 -0.40 0.33 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.10 1.90 6.22 -51.93 -0.32 1.57 16 45 H 0.04 0.69 6.14 -51.93 -0.32 0.37 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.36 8.80 4.78 -40.82 -0.19 8.60 16 48 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 374.11 15.07 5.64 5.64 Total: -1.00 -33.78 374.11 -7.47 -41.25 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.62 Total: 6.64 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -0.88 Total: -2.44 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.05 Total: -56.23 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.06 Total: -3.85 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.71 Total: 18.43 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.78 -7.47 -41.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133118341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.969 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds