Wall clock time and date at job start Tue Mar 31 2020 17:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.46115 * 2 1 4 4 C 1.53042 * 109.45695 * 119.97235 * 2 1 3 5 5 C 1.53189 * 109.31087 * 181.37210 * 4 2 1 6 6 N 1.46927 * 108.77597 * 305.36195 * 5 4 2 7 7 C 1.34772 * 120.63308 * 233.58497 * 6 5 4 8 8 O 1.21289 * 120.00317 * 176.31126 * 7 6 5 9 9 C 1.50699 * 120.00151 * 356.31467 * 7 6 5 10 10 C 1.53000 * 115.55257 * 81.81989 * 9 7 6 11 11 C 1.53005 * 109.46913 * 61.29869 * 10 9 7 12 12 F 1.39896 * 109.46998 * 301.30137 * 10 9 7 13 13 F 1.39902 * 109.47316 * 181.30063 * 10 9 7 14 14 C 1.53004 * 117.49872 * 227.49500 * 9 7 6 15 15 C 1.53005 * 117.49689 * 296.15551 * 9 7 6 16 16 C 1.46927 * 118.73628 * 53.86326 * 6 5 4 17 17 C 1.53042 * 109.44876 * 240.03109 * 2 1 3 18 18 H 1.09005 * 109.49939 * 298.60543 * 17 2 1 19 19 C 1.53001 * 109.49623 * 58.67229 * 17 2 1 20 20 N 1.46503 * 109.46796 * 185.00002 * 19 17 2 21 21 C 1.36942 * 119.99789 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00046 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99787 * 180.02562 * 21 20 19 24 24 N 1.31616 * 119.99543 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00102 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47070 * 90.00498 * 25 23 21 27 27 H 1.48502 * 109.46787 * 210.00217 * 25 23 21 28 28 H 1.48494 * 109.47341 * 330.00211 * 25 23 21 29 29 H 1.08994 * 109.47342 * 300.03182 * 1 2 3 30 30 H 1.09009 * 109.47006 * 60.03110 * 1 2 3 31 31 H 1.09003 * 109.47588 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.49654 * 61.42052 * 4 2 1 33 33 H 1.09000 * 109.49503 * 301.31751 * 4 2 1 34 34 H 1.08997 * 109.58821 * 185.57715 * 5 4 2 35 35 H 1.09006 * 109.59101 * 65.14989 * 5 4 2 36 36 H 1.08998 * 109.47138 * 294.73413 * 11 10 9 37 37 H 1.08999 * 109.47019 * 174.73635 * 11 10 9 38 38 H 1.08994 * 109.46956 * 54.73113 * 11 10 9 39 39 H 1.09003 * 117.49517 * 214.99941 * 14 9 7 40 40 H 1.08991 * 117.49886 * 0.02562 * 14 9 7 41 41 H 1.08995 * 117.49591 * 359.97084 * 15 9 7 42 42 H 1.09001 * 117.49901 * 144.97271 * 15 9 7 43 43 H 1.08996 * 109.59081 * 65.92655 * 16 6 5 44 44 H 1.08997 * 109.58492 * 186.35422 * 16 6 5 45 45 H 1.08997 * 109.47201 * 304.99833 * 19 17 2 46 46 H 1.08997 * 109.47276 * 64.99881 * 19 17 2 47 47 H 0.97004 * 120.00260 * 359.97438 * 20 19 17 48 48 H 0.97001 * 119.99789 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 1.2500 5 6 3.5712 -0.6890 1.2641 6 7 4.0675 -1.2494 -0.0002 7 6 4.9615 -2.2579 -0.0003 8 8 5.3130 -2.7567 -1.0485 9 6 5.5245 -2.7660 1.3020 10 6 4.6427 -3.7615 2.0585 11 6 4.4258 -5.0075 1.1974 12 9 3.4073 -3.1690 2.3410 13 9 5.2702 -4.1248 3.2549 14 6 7.0402 -2.9557 1.3902 15 6 6.3689 -1.7972 2.1323 16 6 3.5753 -0.6853 -1.2644 17 6 2.0395 -0.7209 -1.2501 18 1 1.6968 -1.7556 -1.2386 19 6 1.5025 -0.0188 -2.4990 20 7 1.8911 -0.7772 -3.6907 21 6 1.5205 -0.3372 -4.9333 22 1 0.9412 0.5687 -5.0349 23 6 1.8883 -1.0560 -6.0624 24 7 1.5315 -0.6333 -7.2567 25 14 2.8895 -2.6232 -5.8868 26 1 1.9728 -3.7836 -5.7510 27 1 3.7416 -2.8036 -7.0896 28 1 3.7499 -2.5283 -4.6803 29 1 -0.3634 0.5143 0.8896 30 1 -0.3633 0.5134 -0.8903 31 1 -0.3634 -1.0277 0.0005 32 1 1.6975 -1.7557 1.2382 33 1 1.6573 -0.2207 2.1398 34 1 3.9415 -1.2850 2.0982 35 1 3.9145 0.3404 1.3671 36 1 3.8544 -4.7399 0.3086 37 1 3.8769 -5.7544 1.7709 38 1 5.3914 -5.4157 0.8993 39 1 7.4090 -3.7898 1.9873 40 1 7.6301 -2.7126 0.5066 41 1 6.5176 -0.7927 1.7364 42 1 6.2959 -1.8689 3.2175 43 1 3.9187 0.3444 -1.3634 44 1 3.9482 -1.2788 -2.0991 45 1 0.4154 0.0394 -2.4439 46 1 1.9177 0.9873 -2.5571 47 1 2.4117 -1.5907 -3.5995 48 1 1.7889 -1.1354 -8.0458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133118341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:26 Heat of formation + Delta-G solvation = -119.162321 kcal Electronic energy + Delta-G solvation = -30916.839366 eV Core-core repulsion = 26642.703894 eV Total energy + Delta-G solvation = -4274.135473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.19850 -48.17213 -41.67447 -39.60220 -37.68323 -36.77391 -35.08571 -33.71526 -32.36113 -31.87912 -29.41390 -27.87004 -26.06178 -24.77108 -24.61265 -23.53640 -22.99514 -22.57933 -21.10823 -20.08050 -19.61529 -18.86861 -18.49878 -17.57530 -17.28993 -16.89559 -16.74964 -16.12161 -15.98397 -15.73260 -15.45252 -15.18727 -14.97257 -14.82364 -14.62880 -14.48042 -14.41635 -14.10014 -14.06694 -14.01137 -13.59039 -13.43618 -13.32257 -13.15554 -12.91543 -12.84417 -12.68341 -12.62863 -12.55886 -12.26844 -12.03057 -11.90848 -11.83117 -11.71691 -11.48411 -11.34283 -11.25817 -11.03628 -10.82567 -9.74635 -9.31206 -8.07674 -5.39209 1.24057 1.31271 1.34192 1.40921 1.73839 2.28182 2.41772 2.51857 2.95746 3.07581 3.24540 3.33205 3.44080 3.49343 3.74009 3.78781 3.81125 3.82023 3.97320 4.03403 4.24175 4.33006 4.40617 4.50634 4.52267 4.55278 4.56038 4.59075 4.71627 4.76209 4.78414 4.82613 4.86881 4.91222 4.93756 5.01852 5.05593 5.11307 5.19054 5.22460 5.41058 5.48143 5.55734 5.72693 6.17425 6.27176 6.96101 7.03376 7.80906 7.97575 9.14033 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.004141 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.722838 B = 6759.798008 C = 7878.754249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 H 0.086 0.914 4 C -0.120 4.120 5 C 0.096 3.904 6 N -0.595 5.595 7 C 0.548 3.452 8 O -0.574 6.574 9 C -0.232 4.232 10 C 0.339 3.661 11 C -0.192 4.192 12 F -0.192 7.192 13 F -0.187 7.187 14 C -0.121 4.121 15 C -0.127 4.127 16 C 0.121 3.879 17 C -0.092 4.092 18 H 0.057 0.943 19 C 0.159 3.841 20 N -0.761 5.761 21 C -0.230 4.230 22 H 0.064 0.936 23 C -0.055 4.055 24 N -0.980 5.980 25 Si 0.943 3.057 26 H -0.279 1.279 27 H -0.292 1.292 28 H -0.267 1.267 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.131 0.869 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.039 0.961 46 H 0.030 0.970 47 H 0.361 0.639 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.220 -3.134 30.316 31.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 H 0.104 0.896 4 C -0.158 4.158 5 C -0.025 4.025 6 N -0.326 5.326 7 C 0.336 3.664 8 O -0.453 6.453 9 C -0.236 4.236 10 C 0.302 3.698 11 C -0.249 4.249 12 F -0.173 7.173 13 F -0.168 7.168 14 C -0.159 4.159 15 C -0.164 4.164 16 C -0.002 4.002 17 C -0.112 4.112 18 H 0.075 0.925 19 C 0.033 3.967 20 N -0.407 5.407 21 C -0.361 4.361 22 H 0.082 0.918 23 C -0.247 4.247 24 N -0.631 5.631 25 Si 0.771 3.229 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.192 1.192 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.149 0.851 40 H 0.121 0.879 41 H 0.134 0.866 42 H 0.152 0.848 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.194 0.806 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.266 -3.224 29.677 30.975 hybrid contribution 0.247 -0.989 -1.022 1.443 sum 8.513 -4.213 28.655 30.188 Atomic orbital electron populations 1.21863 0.94335 1.01742 1.02413 1.21080 0.96421 0.99711 0.92434 0.89559 1.21930 0.94250 1.01213 0.98375 1.22266 0.95157 1.00429 0.84693 1.48171 1.41691 1.34323 1.08419 1.19547 0.78712 0.79195 0.88975 1.90739 1.61305 1.58724 1.34558 1.22198 0.97037 1.06651 0.97719 1.19920 0.76887 0.91956 0.81007 1.22734 1.06041 0.95939 1.00225 1.92988 1.44731 1.85127 1.94420 1.93017 1.82535 1.92362 1.48853 1.23214 0.87668 1.01903 1.03084 1.23404 0.97169 0.95624 1.00163 1.21640 0.94110 0.98859 0.85563 1.21702 0.93915 0.99921 0.95651 0.92462 1.20917 0.97706 0.93998 0.84044 1.42864 1.65950 1.29198 1.02675 1.19079 1.26668 1.06538 0.83772 0.91763 1.25318 1.02486 1.01968 0.94881 1.69846 1.53051 1.42331 0.97823 0.85597 0.79181 0.81039 0.77085 1.20512 1.21816 1.19208 0.90407 0.93095 0.93475 0.92411 0.87623 0.87694 0.89250 0.91311 0.88067 0.88167 0.85107 0.87944 0.86640 0.84806 0.90175 0.92506 0.94289 0.95173 0.80648 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.82 71.98 0.63 -2.36 16 2 C -0.08 -1.63 2.23 -10.77 -0.02 -1.66 16 3 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.12 -2.03 5.12 30.67 0.16 -1.87 16 5 C 0.10 1.62 5.19 86.36 0.45 2.07 16 6 N -0.60 -15.04 2.97 -818.07 -2.43 -17.47 16 7 C 0.55 15.24 6.08 87.66 0.53 15.77 16 8 O -0.57 -21.56 16.43 -3.06 -0.05 -21.61 16 9 C -0.23 -4.40 0.75 -52.92 -0.04 -4.44 16 10 C 0.34 6.12 2.06 30.60 0.06 6.19 16 11 C -0.19 -3.51 9.13 71.98 0.66 -2.85 16 12 F -0.19 -3.70 13.20 44.97 0.59 -3.11 16 13 F -0.19 -3.03 15.63 44.97 0.70 -2.32 16 14 C -0.12 -1.81 9.62 30.62 0.29 -1.52 16 15 C -0.13 -1.55 8.32 30.62 0.25 -1.30 16 16 C 0.12 3.77 5.55 86.51 0.48 4.25 16 17 C -0.09 -2.78 1.93 -10.57 -0.02 -2.80 16 18 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 19 C 0.16 6.07 5.41 86.38 0.47 6.54 16 20 N -0.76 -37.46 5.18 -343.45 -1.78 -39.24 16 21 C -0.23 -13.55 10.47 84.03 0.88 -12.67 16 22 H 0.06 4.06 8.06 -2.91 -0.02 4.04 16 23 C -0.05 -3.35 5.50 84.86 0.47 -2.89 16 24 N -0.98 -64.43 13.97 21.65 0.30 -64.13 16 25 Si 0.94 49.18 27.74 68.60 1.90 51.08 16 26 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 27 H -0.29 -15.18 7.11 99.48 0.71 -14.47 16 28 H -0.27 -13.51 6.52 99.48 0.65 -12.86 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.20 6.29 -2.38 -0.01 1.19 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.16 7.49 -2.39 -0.02 1.14 16 33 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.11 1.57 3.76 -2.39 -0.01 1.56 16 35 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.07 1.59 7.77 -2.39 -0.02 1.58 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.13 1.45 7.82 -2.39 -0.02 1.43 16 40 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.13 1.12 7.74 -2.39 -0.02 1.10 16 43 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.06 2.27 6.22 -2.39 -0.01 2.25 16 45 H 0.04 1.49 6.14 -2.39 -0.01 1.48 16 46 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.36 17.85 4.78 -92.71 -0.44 17.40 16 48 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -75.87 374.11 4.96 -70.90 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.46 Total: 25.42 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 5.25 Total: 0.48 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -3.90 Total: -120.84 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.05 Total: -21.61 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 1.30 Total: -5.43 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 1.90 Total: 51.08 kcal Total: -75.87 4.96 -70.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133118341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.260 kcal (2) G-P(sol) polarization free energy of solvation -75.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds