Wall clock time and date at job start Tue Mar 31 2020 17:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.45960 * 2 1 4 4 C 1.53044 * 109.46036 * 240.02422 * 2 1 3 5 5 C 1.53187 * 109.33915 * 178.61116 * 4 2 1 6 6 N 1.47004 * 108.73895 * 54.62385 * 5 4 2 7 7 C 1.34766 * 120.61404 * 126.38613 * 6 5 4 8 8 O 1.21285 * 119.99894 * 174.47258 * 7 6 5 9 9 C 1.50703 * 120.00217 * 354.47474 * 7 6 5 10 10 C 1.53003 * 115.54937 * 284.24620 * 9 7 6 11 11 C 1.53004 * 109.46997 * 304.62305 * 10 9 7 12 12 F 1.39898 * 109.46976 * 64.61957 * 10 9 7 13 13 F 1.39897 * 109.47215 * 184.62020 * 10 9 7 14 14 C 1.52999 * 117.50194 * 138.57958 * 9 7 6 15 15 C 1.52996 * 117.50065 * 69.91711 * 9 7 6 16 16 C 1.46926 * 118.75320 * 306.40794 * 6 5 4 17 17 C 1.53037 * 109.44919 * 119.96525 * 2 1 3 18 18 H 1.08997 * 109.50009 * 61.42725 * 17 2 1 19 19 C 1.53000 * 109.49764 * 301.33111 * 17 2 1 20 20 N 1.46502 * 109.47174 * 175.00086 * 19 17 2 21 21 C 1.36941 * 119.99879 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00221 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99824 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00203 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99933 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46901 * 90.00575 * 25 23 21 27 27 H 1.48500 * 109.47086 * 210.00168 * 25 23 21 28 28 H 1.48500 * 109.47263 * 330.00784 * 25 23 21 29 29 H 1.09005 * 109.47209 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47251 * 299.97318 * 1 2 3 31 31 H 1.09005 * 109.47322 * 59.97412 * 1 2 3 32 32 H 1.08993 * 109.49855 * 298.58099 * 4 2 1 33 33 H 1.09004 * 109.49334 * 58.64363 * 4 2 1 34 34 H 1.09002 * 109.58871 * 174.43835 * 5 4 2 35 35 H 1.09004 * 109.58721 * 294.86822 * 5 4 2 36 36 H 1.08993 * 109.47184 * 55.82296 * 11 10 9 37 37 H 1.09004 * 109.46735 * 175.82646 * 11 10 9 38 38 H 1.08998 * 109.47057 * 295.81748 * 11 10 9 39 39 H 1.09001 * 117.49555 * 359.97438 * 14 9 7 40 40 H 1.08996 * 117.50264 * 145.01945 * 14 9 7 41 41 H 1.09002 * 117.49945 * 214.98405 * 15 9 7 42 42 H 1.08996 * 117.49920 * 359.97438 * 15 9 7 43 43 H 1.08997 * 109.58734 * 293.82008 * 16 6 5 44 44 H 1.08996 * 109.58465 * 173.38891 * 16 6 5 45 45 H 1.09004 * 109.46951 * 294.99997 * 19 17 2 46 46 H 1.08995 * 109.47187 * 54.99944 * 19 17 2 47 47 H 0.96994 * 119.99951 * 359.97438 * 20 19 17 48 48 H 0.97003 * 120.00252 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 3.5713 -0.6891 -1.2648 6 7 4.0676 -1.2494 0.0004 7 6 4.9609 -2.2584 0.0006 8 8 5.4386 -2.6452 1.0461 9 6 5.3662 -2.9062 -1.2984 10 6 4.3393 -3.8632 -1.9072 11 6 3.9739 -4.9387 -0.8821 12 9 3.1902 -3.1491 -2.2634 13 9 4.8833 -4.4689 -3.0448 14 6 6.8462 -3.2449 -1.4873 15 6 6.2218 -2.0818 -2.2622 16 6 3.5711 -0.6889 1.2646 17 6 2.0395 -0.7208 1.2502 18 1 1.6973 -1.7556 1.2384 19 6 1.5024 -0.0187 2.4990 20 7 1.8911 -0.7770 3.6907 21 6 1.5203 -0.3369 4.9333 22 1 0.9410 0.5690 5.0348 23 6 1.8881 -1.0556 6.0624 24 7 2.5937 -2.1598 5.9388 25 14 1.3830 -0.4548 7.7576 26 1 0.0667 -1.0401 8.1182 27 1 2.4007 -0.8735 8.7547 28 1 1.2800 1.0265 7.7474 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8902 31 1 -0.3634 0.5142 -0.8898 32 1 1.6976 -1.7557 -1.2382 33 1 1.6569 -0.2212 -2.1398 34 1 3.9412 -1.2850 -2.0992 35 1 3.9144 0.3404 -1.3679 36 1 3.6193 -4.4634 0.0325 37 1 3.1886 -5.5761 -1.2884 38 1 4.8536 -5.5428 -0.6601 39 1 7.5268 -2.9987 -0.6723 40 1 7.0883 -4.1491 -2.0457 41 1 6.0533 -2.2213 -3.3300 42 1 6.4912 -1.0707 -1.9570 43 1 3.9142 0.3405 1.3676 44 1 3.9411 -1.2849 2.0988 45 1 1.9176 0.9874 2.5571 46 1 0.4154 0.0395 2.4439 47 1 2.4110 -1.5907 3.5996 48 1 2.8510 -2.6619 6.7279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133118342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:30 Heat of formation + Delta-G solvation = -101.388007 kcal Electronic energy + Delta-G solvation = -30870.246468 eV Core-core repulsion = 26596.881747 eV Total energy + Delta-G solvation = -4273.364721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.30667 -47.28374 -40.51748 -38.41121 -36.62467 -34.93171 -33.65480 -31.84909 -31.53554 -29.81150 -28.29314 -26.08020 -24.88065 -23.70675 -23.22123 -22.78163 -21.94353 -21.16388 -19.68279 -19.06252 -17.87202 -17.62103 -17.03426 -16.55117 -16.15716 -15.84612 -14.96487 -14.83793 -14.78846 -14.41910 -14.09319 -14.01287 -13.79775 -13.64213 -13.42465 -13.34116 -13.00290 -12.87999 -12.70545 -12.67519 -12.47010 -12.35452 -12.02316 -11.87321 -11.82132 -11.61717 -11.48730 -10.97661 -10.95618 -10.86955 -10.76126 -10.59582 -10.55804 -10.24446 -10.13306 -9.96054 -9.69229 -9.54823 -8.83194 -8.50970 -6.86435 -5.70387 -2.99797 2.38153 2.85456 3.12793 3.43203 3.46821 3.51564 3.53745 3.84424 4.01124 4.22768 4.25982 4.61394 4.63130 4.71407 4.81214 4.92554 4.93233 5.13126 5.19738 5.23168 5.31753 5.33850 5.46648 5.49550 5.52475 5.62387 5.65811 5.72290 5.73131 5.76390 5.79373 5.86691 5.97015 6.03843 6.07620 6.18666 6.26363 6.36032 6.49383 6.56923 6.63185 6.82984 6.91327 7.44416 7.74289 8.16815 8.47529 9.58572 10.16618 10.50789 11.52042 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015332 B = 0.003626 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.760343 B = 7719.917282 C = 8641.963022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.070 0.930 4 C -0.127 4.127 5 C 0.101 3.899 6 N -0.599 5.599 7 C 0.552 3.448 8 O -0.517 6.517 9 C -0.216 4.216 10 C 0.334 3.666 11 C -0.191 4.191 12 F -0.187 7.187 13 F -0.195 7.195 14 C -0.123 4.123 15 C -0.150 4.150 16 C 0.120 3.880 17 C -0.100 4.100 18 H 0.073 0.927 19 C 0.159 3.841 20 N -0.733 5.733 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.067 0.933 44 H 0.103 0.897 45 H 0.018 0.982 46 H 0.028 0.972 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.334 -0.392 -22.983 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.088 0.912 4 C -0.165 4.165 5 C -0.022 4.022 6 N -0.331 5.331 7 C 0.337 3.663 8 O -0.392 6.392 9 C -0.220 4.220 10 C 0.298 3.702 11 C -0.249 4.249 12 F -0.168 7.168 13 F -0.176 7.176 14 C -0.161 4.161 15 C -0.187 4.187 16 C -0.001 4.001 17 C -0.120 4.120 18 H 0.092 0.908 19 C 0.031 3.969 20 N -0.378 5.378 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.085 0.915 44 H 0.122 0.878 45 H 0.036 0.964 46 H 0.045 0.955 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.507 -0.489 -22.302 22.758 hybrid contribution -0.300 0.085 0.750 0.812 sum 4.208 -0.404 -21.551 21.962 Atomic orbital electron populations 1.21874 0.94975 1.01949 1.01641 1.21103 0.95978 0.99293 0.94017 0.91188 1.21976 0.94469 1.01954 0.98094 1.21959 0.95123 0.98910 0.86171 1.48108 1.42327 1.34528 1.08157 1.18906 0.79501 0.79765 0.88086 1.90792 1.53453 1.62761 1.32172 1.22379 0.95493 1.05020 0.99114 1.20025 0.79758 0.88081 0.82346 1.22737 1.04803 0.98270 0.99082 1.93006 1.51458 1.79377 1.92959 1.92998 1.86243 1.84085 1.54244 1.23107 0.90368 1.00135 1.02454 1.23206 1.00390 0.97453 0.97674 1.21792 0.93829 0.99249 0.85260 1.21708 0.94265 1.00776 0.95256 0.90825 1.20728 0.96875 0.94027 0.85308 1.42412 1.65466 1.29048 1.00826 1.19201 1.27924 1.06286 0.83801 0.91257 1.24738 1.00837 0.97510 0.97773 1.69670 1.42456 1.17240 1.28501 0.86219 0.77606 0.77923 0.84608 1.21787 1.21798 1.20801 0.92783 0.91685 0.93239 0.90931 0.91070 0.89147 0.91701 0.88856 0.89686 0.88832 0.86781 0.86945 0.87098 0.87295 0.91470 0.87838 0.96394 0.95461 0.78195 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.82 37.16 0.33 -1.44 16 2 C -0.08 -1.07 2.23 -90.58 -0.20 -1.27 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.38 4.99 -26.61 -0.13 -1.52 16 5 C 0.10 1.10 5.32 -3.67 -0.02 1.08 16 6 N -0.60 -8.45 2.97 -172.71 -0.51 -8.97 16 7 C 0.55 8.30 5.73 -10.99 -0.06 8.23 16 8 O -0.52 -9.97 16.38 5.55 0.09 -9.88 16 9 C -0.22 -2.44 0.84 -155.66 -0.13 -2.57 16 10 C 0.33 3.68 2.09 -26.73 -0.06 3.63 16 11 C -0.19 -2.09 9.22 37.16 0.34 -1.75 16 12 F -0.19 -2.15 12.58 2.25 0.03 -2.13 16 13 F -0.19 -2.06 15.64 2.25 0.04 -2.02 16 14 C -0.12 -1.16 9.54 -26.69 -0.25 -1.42 16 15 C -0.15 -1.28 8.27 -26.70 -0.22 -1.50 16 16 C 0.12 2.01 5.50 -3.71 -0.02 1.99 16 17 C -0.10 -1.63 1.92 -90.50 -0.17 -1.81 16 18 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 19 C 0.16 3.16 5.41 -4.04 -0.02 3.14 16 20 N -0.73 -18.79 5.38 -59.91 -0.32 -19.11 16 21 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 22 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.87 13.06 55.49 0.72 -28.14 16 25 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.85 6.29 -51.93 -0.33 0.52 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.88 6.89 -51.93 -0.36 0.52 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.90 3.78 -51.93 -0.20 0.70 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.22 7.29 -51.93 -0.38 0.84 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.11 0.89 7.65 -51.93 -0.40 0.49 16 41 H 0.11 0.80 7.92 -51.93 -0.41 0.39 16 42 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.10 2.16 6.25 -51.93 -0.32 1.83 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.03 0.55 6.14 -51.93 -0.32 0.23 16 47 H 0.38 10.53 6.90 -40.82 -0.28 10.25 16 48 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -32.69 375.19 -7.81 -40.49 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -7.61 Total: 8.98 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -0.87 Total: -2.64 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.11 Total: -56.22 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.06 Total: -4.15 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.69 -7.81 -40.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133118342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.894 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds