Wall clock time and date at job start Tue Mar 31 2020 17:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.45960 * 2 1 4 4 C 1.53044 * 109.46036 * 240.02422 * 2 1 3 5 5 C 1.53187 * 109.33915 * 178.61116 * 4 2 1 6 6 N 1.47004 * 108.73895 * 54.62385 * 5 4 2 7 7 C 1.34766 * 120.61404 * 126.38613 * 6 5 4 8 8 O 1.21285 * 119.99894 * 174.47258 * 7 6 5 9 9 C 1.50703 * 120.00217 * 354.47474 * 7 6 5 10 10 C 1.53003 * 115.54937 * 284.24620 * 9 7 6 11 11 C 1.53004 * 109.46997 * 304.62305 * 10 9 7 12 12 F 1.39898 * 109.46976 * 64.61957 * 10 9 7 13 13 F 1.39897 * 109.47215 * 184.62020 * 10 9 7 14 14 C 1.52999 * 117.50194 * 138.57958 * 9 7 6 15 15 C 1.52996 * 117.50065 * 69.91711 * 9 7 6 16 16 C 1.46926 * 118.75320 * 306.40794 * 6 5 4 17 17 C 1.53037 * 109.44919 * 119.96525 * 2 1 3 18 18 H 1.08997 * 109.50009 * 61.42725 * 17 2 1 19 19 C 1.53000 * 109.49764 * 301.33111 * 17 2 1 20 20 N 1.46502 * 109.47174 * 175.00086 * 19 17 2 21 21 C 1.36941 * 119.99879 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00221 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99824 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00203 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99933 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46901 * 90.00575 * 25 23 21 27 27 H 1.48500 * 109.47086 * 210.00168 * 25 23 21 28 28 H 1.48500 * 109.47263 * 330.00784 * 25 23 21 29 29 H 1.09005 * 109.47209 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47251 * 299.97318 * 1 2 3 31 31 H 1.09005 * 109.47322 * 59.97412 * 1 2 3 32 32 H 1.08993 * 109.49855 * 298.58099 * 4 2 1 33 33 H 1.09004 * 109.49334 * 58.64363 * 4 2 1 34 34 H 1.09002 * 109.58871 * 174.43835 * 5 4 2 35 35 H 1.09004 * 109.58721 * 294.86822 * 5 4 2 36 36 H 1.08993 * 109.47184 * 55.82296 * 11 10 9 37 37 H 1.09004 * 109.46735 * 175.82646 * 11 10 9 38 38 H 1.08998 * 109.47057 * 295.81748 * 11 10 9 39 39 H 1.09001 * 117.49555 * 359.97438 * 14 9 7 40 40 H 1.08996 * 117.50264 * 145.01945 * 14 9 7 41 41 H 1.09002 * 117.49945 * 214.98405 * 15 9 7 42 42 H 1.08996 * 117.49920 * 359.97438 * 15 9 7 43 43 H 1.08997 * 109.58734 * 293.82008 * 16 6 5 44 44 H 1.08996 * 109.58465 * 173.38891 * 16 6 5 45 45 H 1.09004 * 109.46951 * 294.99997 * 19 17 2 46 46 H 1.08995 * 109.47187 * 54.99944 * 19 17 2 47 47 H 0.96994 * 119.99951 * 359.97438 * 20 19 17 48 48 H 0.97003 * 120.00252 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 3.5713 -0.6891 -1.2648 6 7 4.0676 -1.2494 0.0004 7 6 4.9609 -2.2584 0.0006 8 8 5.4386 -2.6452 1.0461 9 6 5.3662 -2.9062 -1.2984 10 6 4.3393 -3.8632 -1.9072 11 6 3.9739 -4.9387 -0.8821 12 9 3.1902 -3.1491 -2.2634 13 9 4.8833 -4.4689 -3.0448 14 6 6.8462 -3.2449 -1.4873 15 6 6.2218 -2.0818 -2.2622 16 6 3.5711 -0.6889 1.2646 17 6 2.0395 -0.7208 1.2502 18 1 1.6973 -1.7556 1.2384 19 6 1.5024 -0.0187 2.4990 20 7 1.8911 -0.7770 3.6907 21 6 1.5203 -0.3369 4.9333 22 1 0.9410 0.5690 5.0348 23 6 1.8881 -1.0556 6.0624 24 7 2.5937 -2.1598 5.9388 25 14 1.3830 -0.4548 7.7576 26 1 0.0667 -1.0401 8.1182 27 1 2.4007 -0.8735 8.7547 28 1 1.2800 1.0265 7.7474 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8902 31 1 -0.3634 0.5142 -0.8898 32 1 1.6976 -1.7557 -1.2382 33 1 1.6569 -0.2212 -2.1398 34 1 3.9412 -1.2850 -2.0992 35 1 3.9144 0.3404 -1.3679 36 1 3.6193 -4.4634 0.0325 37 1 3.1886 -5.5761 -1.2884 38 1 4.8536 -5.5428 -0.6601 39 1 7.5268 -2.9987 -0.6723 40 1 7.0883 -4.1491 -2.0457 41 1 6.0533 -2.2213 -3.3300 42 1 6.4912 -1.0707 -1.9570 43 1 3.9142 0.3405 1.3676 44 1 3.9411 -1.2849 2.0988 45 1 1.9176 0.9874 2.5571 46 1 0.4154 0.0395 2.4439 47 1 2.4110 -1.5907 3.5996 48 1 2.8510 -2.6619 6.7279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133118342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:29 Heat of formation + Delta-G solvation = -121.333666 kcal Electronic energy + Delta-G solvation = -30871.111377 eV Core-core repulsion = 26596.881747 eV Total energy + Delta-G solvation = -4274.229629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.17598 -48.14732 -41.64716 -39.57055 -37.63427 -36.61334 -35.04967 -33.53383 -32.40076 -31.50358 -29.38056 -27.63643 -26.03242 -24.98716 -24.67378 -23.54143 -22.98465 -22.57872 -20.94436 -20.06674 -19.14887 -18.81779 -18.50134 -17.49206 -17.30453 -16.84058 -16.73803 -16.04861 -15.85260 -15.64226 -15.43971 -15.18004 -15.12272 -14.81449 -14.51110 -14.41768 -14.33775 -14.05087 -13.96297 -13.87867 -13.57935 -13.33213 -13.07152 -13.04733 -12.88421 -12.76604 -12.66067 -12.59626 -12.54992 -12.18353 -12.00216 -11.92415 -11.82150 -11.69223 -11.47197 -11.31385 -11.19232 -10.96202 -10.78909 -9.71001 -8.99991 -7.94896 -5.24958 1.26557 1.44975 1.47658 1.56134 1.78920 2.29685 2.53607 2.55091 2.96907 3.08675 3.34493 3.38356 3.45264 3.66322 3.76652 3.83337 3.85532 3.86379 4.05453 4.18096 4.27594 4.37763 4.42499 4.51266 4.54553 4.56818 4.59329 4.59955 4.74134 4.78903 4.80948 4.85830 4.86660 4.94032 4.95786 5.03487 5.08964 5.13988 5.24541 5.26200 5.42971 5.48444 5.50658 5.58524 6.25811 6.31503 7.00801 7.31506 8.07948 8.30145 9.28678 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015332 B = 0.003626 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.760343 B = 7719.917282 C = 8641.963022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 H 0.085 0.915 4 C -0.121 4.121 5 C 0.097 3.903 6 N -0.596 5.596 7 C 0.548 3.452 8 O -0.574 6.574 9 C -0.232 4.232 10 C 0.341 3.659 11 C -0.193 4.193 12 F -0.189 7.189 13 F -0.187 7.187 14 C -0.123 4.123 15 C -0.125 4.125 16 C 0.128 3.872 17 C -0.086 4.086 18 H 0.049 0.951 19 C 0.158 3.842 20 N -0.747 5.747 21 C -0.245 4.245 22 H 0.079 0.921 23 C -0.078 4.078 24 N -0.972 5.972 25 Si 0.975 3.025 26 H -0.286 1.286 27 H -0.297 1.297 28 H -0.266 1.266 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.116 0.884 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.024 0.976 46 H 0.034 0.966 47 H 0.370 0.630 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.816 1.231 -25.949 26.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.097 4.097 3 H 0.103 0.897 4 C -0.159 4.159 5 C -0.024 4.024 6 N -0.327 5.327 7 C 0.335 3.665 8 O -0.453 6.453 9 C -0.237 4.237 10 C 0.305 3.695 11 C -0.251 4.251 12 F -0.170 7.170 13 F -0.167 7.167 14 C -0.160 4.160 15 C -0.162 4.162 16 C 0.005 3.995 17 C -0.106 4.106 18 H 0.068 0.932 19 C 0.031 3.969 20 N -0.390 5.390 21 C -0.377 4.377 22 H 0.097 0.903 23 C -0.270 4.270 24 N -0.623 5.623 25 Si 0.804 3.196 26 H -0.213 1.213 27 H -0.224 1.224 28 H -0.191 1.191 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.134 0.866 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.201 0.799 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.949 1.189 -25.336 25.669 hybrid contribution -0.151 -0.396 1.619 1.673 sum 3.798 0.793 -23.717 24.032 Atomic orbital electron populations 1.21847 0.94276 1.01636 1.02407 1.21089 0.96480 0.99594 0.92520 0.89708 1.21961 0.94273 1.01348 0.98318 1.22268 0.95245 1.00263 0.84662 1.48181 1.41864 1.34284 1.08373 1.19545 0.78730 0.79340 0.88855 1.90760 1.55531 1.64348 1.34625 1.22204 0.96597 1.06694 0.98160 1.19833 0.79553 0.87804 0.82339 1.22734 1.05652 0.98603 0.98070 1.92998 1.51623 1.79395 1.92960 1.93011 1.86118 1.83925 1.53691 1.23214 0.88640 1.01640 1.02492 1.23395 0.97222 0.97330 0.98204 1.21447 0.94132 0.98527 0.85406 1.21544 0.93746 0.99531 0.95779 0.93224 1.20914 0.97206 0.93863 0.84913 1.42664 1.65283 1.29058 1.01994 1.19666 1.26850 1.06149 0.85006 0.90324 1.25620 1.01567 0.97940 1.01831 1.69861 1.44431 1.18871 1.29121 0.85116 0.76895 0.78137 0.79476 1.21272 1.22400 1.19095 0.93672 0.93049 0.90296 0.92249 0.87605 0.87613 0.89374 0.91859 0.88133 0.88101 0.88000 0.85111 0.84683 0.86560 0.90892 0.92860 0.95823 0.94824 0.79862 0.94144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.82 71.98 0.63 -2.52 16 2 C -0.08 -1.80 2.23 -10.77 -0.02 -1.82 16 3 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 4 C -0.12 -2.28 4.99 30.67 0.15 -2.13 16 5 C 0.10 1.85 5.32 86.35 0.46 2.31 16 6 N -0.60 -16.85 2.97 -818.72 -2.43 -19.28 16 7 C 0.55 16.95 5.73 87.66 0.50 17.45 16 8 O -0.57 -23.85 16.38 -3.04 -0.05 -23.90 16 9 C -0.23 -5.00 0.84 -52.93 -0.04 -5.05 16 10 C 0.34 7.03 2.09 30.60 0.06 7.09 16 11 C -0.19 -4.25 9.22 71.98 0.66 -3.59 16 12 F -0.19 -3.97 12.58 44.97 0.57 -3.40 16 13 F -0.19 -3.43 15.64 44.97 0.70 -2.73 16 14 C -0.12 -2.14 9.54 30.62 0.29 -1.84 16 15 C -0.12 -1.76 8.27 30.62 0.25 -1.51 16 16 C 0.13 4.47 5.50 86.36 0.48 4.94 16 17 C -0.09 -2.86 1.92 -10.72 -0.02 -2.88 16 18 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 19 C 0.16 6.38 5.41 86.38 0.47 6.85 16 20 N -0.75 -39.87 5.38 -343.45 -1.85 -41.72 16 21 C -0.24 -14.18 9.99 84.03 0.84 -13.34 16 22 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 23 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 24 N -0.97 -62.82 13.06 21.65 0.28 -62.54 16 25 Si 0.98 47.68 29.55 68.60 2.03 49.71 16 26 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 27 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 28 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 29 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.05 1.26 6.29 -2.39 -0.02 1.24 16 31 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.06 1.32 6.89 -2.39 -0.02 1.30 16 33 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.11 1.75 3.78 -2.39 -0.01 1.74 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.79 7.29 -2.39 -0.02 1.77 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.13 1.77 7.65 -2.39 -0.02 1.76 16 41 H 0.14 1.32 7.92 -2.39 -0.02 1.30 16 42 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.05 2.42 6.25 -2.39 -0.01 2.41 16 45 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.03 1.35 6.14 -2.39 -0.01 1.33 16 47 H 0.37 21.64 6.90 -92.71 -0.64 21.00 16 48 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -74.96 375.19 4.76 -70.20 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 0.33 Total: 33.87 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 5.18 Total: -0.21 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -4.00 Total: -123.54 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.05 Total: -23.90 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 1.27 Total: -6.13 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -74.96 4.76 -70.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133118342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.131 kcal (2) G-P(sol) polarization free energy of solvation -74.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds