Wall clock time and date at job start Tue Mar 31 2020 17:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.45806 * 2 1 4 4 C 1.53045 * 109.45228 * 119.96592 * 2 1 3 5 5 C 1.53184 * 109.31521 * 181.37979 * 4 2 1 6 6 N 1.46927 * 108.77931 * 305.36755 * 5 4 2 7 7 C 1.34771 * 120.63478 * 233.58616 * 6 5 4 8 8 O 1.21288 * 119.99693 * 355.97449 * 7 6 5 9 9 C 1.50695 * 120.00334 * 175.97109 * 7 6 5 10 10 C 1.52999 * 112.84965 * 66.01273 * 9 7 6 11 11 C 1.53780 * 113.61546 * 294.70694 * 9 7 6 12 12 C 1.53782 * 87.08461 * 220.01851 * 11 9 7 13 13 F 1.39898 * 113.61500 * 270.88770 * 12 11 9 14 14 F 1.39901 * 113.61680 * 139.98246 * 12 11 9 15 15 C 1.53777 * 87.07916 * 25.43171 * 12 11 9 16 16 C 1.46931 * 118.73590 * 53.60301 * 6 5 4 17 17 C 1.53041 * 109.46250 * 240.02818 * 2 1 3 18 18 H 1.08992 * 109.49924 * 298.60955 * 17 2 1 19 19 C 1.53003 * 109.49403 * 58.67564 * 17 2 1 20 20 N 1.46504 * 109.46855 * 184.99887 * 19 17 2 21 21 C 1.36939 * 119.99889 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99818 * 0.02562 * 21 20 19 23 23 C 1.38808 * 119.99964 * 180.02562 * 21 20 19 24 24 N 1.31612 * 120.00288 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99878 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47358 * 89.99814 * 25 23 21 27 27 H 1.48498 * 109.46951 * 209.99407 * 25 23 21 28 28 H 1.48502 * 109.47328 * 329.99735 * 25 23 21 29 29 H 1.09003 * 109.46724 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47080 * 299.96543 * 1 2 3 31 31 H 1.08996 * 109.47352 * 59.97306 * 1 2 3 32 32 H 1.08994 * 109.49619 * 301.33290 * 4 2 1 33 33 H 1.08997 * 109.49318 * 61.39998 * 4 2 1 34 34 H 1.09008 * 109.58891 * 65.15424 * 5 4 2 35 35 H 1.08998 * 109.58768 * 185.43457 * 5 4 2 36 36 H 1.09003 * 109.46911 * 54.97286 * 10 9 7 37 37 H 1.09001 * 109.47133 * 174.97021 * 10 9 7 38 38 H 1.09001 * 109.47462 * 294.96842 * 10 9 7 39 39 H 1.09000 * 113.61724 * 334.56378 * 11 9 7 40 40 H 1.09004 * 113.61804 * 105.46918 * 11 9 7 41 41 H 1.09005 * 113.61777 * 220.01912 * 15 12 11 42 42 H 1.09005 * 113.61499 * 89.11948 * 15 12 11 43 43 H 1.09009 * 109.58391 * 186.60368 * 16 6 5 44 44 H 1.09001 * 109.58384 * 66.18454 * 16 6 5 45 45 H 1.09005 * 109.47612 * 65.00255 * 19 17 2 46 46 H 1.09005 * 109.47118 * 304.99734 * 19 17 2 47 47 H 0.96993 * 120.00149 * 0.02562 * 20 19 17 48 48 H 0.96997 * 120.00497 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 1.2502 5 6 3.5711 -0.6889 1.2645 6 7 4.0677 -1.2492 0.0003 7 6 4.9617 -2.2577 0.0004 8 8 5.4192 -2.6624 1.0482 9 6 5.3930 -2.8824 -1.3014 10 6 6.1802 -1.9183 -2.1911 11 6 4.2600 -3.6170 -2.0373 12 6 5.2947 -4.6998 -2.3861 13 9 5.9792 -4.4565 -3.5817 14 9 4.7926 -6.0029 -2.3016 15 6 6.0667 -4.2546 -1.1329 16 6 3.5713 -0.6889 -1.2640 17 6 2.0399 -0.7209 -1.2500 18 1 1.6972 -1.7555 -1.2385 19 6 1.5030 -0.0189 -2.4990 20 7 1.8920 -0.7772 -3.6906 21 6 1.5207 -0.3377 -4.9333 22 1 0.9414 0.5681 -5.0349 23 6 1.8888 -1.0565 -6.0622 24 7 2.5951 -2.1601 -5.9385 25 14 1.3828 -0.4567 -7.7574 26 1 2.4307 0.4475 -8.2957 27 1 1.2188 -1.6201 -8.6656 28 1 0.0969 0.2794 -7.6587 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8903 31 1 -0.3634 0.5142 -0.8897 32 1 1.6570 -0.2207 2.1398 33 1 1.6970 -1.7554 1.2386 34 1 3.9142 0.3406 1.3677 35 1 3.9411 -1.2828 2.1002 36 1 7.0291 -1.5212 -1.6345 37 1 6.5399 -2.4489 -3.0727 38 1 5.5324 -1.0979 -2.5001 39 1 3.4663 -3.9679 -1.3777 40 1 3.8822 -3.0780 -2.9062 41 1 7.1476 -4.2302 -1.2715 42 1 5.7670 -4.7797 -0.2259 43 1 3.9418 -1.2849 -2.0982 44 1 3.9144 0.3406 -1.3671 45 1 1.9182 0.9873 -2.5571 46 1 0.4159 0.0393 -2.4441 47 1 2.4119 -1.5909 -3.5993 48 1 2.8527 -2.6622 -6.7274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133237639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:52 Heat of formation + Delta-G solvation = -107.756732 kcal Electronic energy + Delta-G solvation = -31150.648647 eV Core-core repulsion = 26877.007758 eV Total energy + Delta-G solvation = -4273.640889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.63650 -46.96079 -40.84648 -38.55570 -37.13885 -34.86583 -33.87678 -32.05011 -30.15950 -29.19846 -28.19360 -26.33102 -25.56835 -24.81291 -23.28393 -22.78463 -21.38072 -20.46670 -19.83802 -18.59160 -17.74497 -17.09950 -16.65173 -16.60970 -15.86782 -15.48129 -15.20549 -14.92792 -14.57820 -14.13143 -14.10775 -13.93940 -13.82565 -13.67369 -13.41557 -13.39452 -13.06329 -12.95856 -12.70853 -12.58538 -12.21477 -12.07495 -11.98334 -11.85137 -11.70899 -11.49498 -11.20607 -11.08491 -11.00073 -10.94670 -10.82436 -10.62925 -10.35959 -10.27274 -10.20426 -9.96685 -9.70344 -9.54901 -8.92697 -8.57834 -6.98125 -5.81882 -3.10615 2.58383 2.94901 3.40817 3.46679 3.48266 3.57618 3.85849 4.21056 4.28758 4.36745 4.53266 4.66858 4.77670 4.81857 4.91440 5.08287 5.14480 5.29540 5.38102 5.40292 5.46182 5.51739 5.54326 5.57557 5.63407 5.68864 5.74906 5.79221 5.83418 5.86140 5.91253 5.95059 5.99656 6.05171 6.07074 6.13339 6.24756 6.30455 6.36598 6.39789 6.56517 6.71857 6.79510 7.40625 7.66499 8.15142 8.36813 9.48383 10.03141 10.37823 11.40647 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.008671 B = 0.005837 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3228.265924 B = 4795.428435 C = 7271.260306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.128 4.128 5 C 0.111 3.889 6 N -0.604 5.604 7 C 0.540 3.460 8 O -0.547 6.547 9 C -0.100 4.100 10 C -0.145 4.145 11 C -0.155 4.155 12 C 0.261 3.739 13 F -0.170 7.170 14 F -0.191 7.191 15 C -0.137 4.137 16 C 0.102 3.898 17 C -0.104 4.104 18 H 0.075 0.925 19 C 0.156 3.844 20 N -0.732 5.732 21 C -0.243 4.243 22 H 0.070 0.930 23 C -0.009 4.009 24 N -0.930 5.930 25 Si 0.904 3.096 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.097 0.903 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.020 0.980 46 H 0.029 0.971 47 H 0.380 0.620 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.537 1.021 13.816 14.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.166 4.166 5 C -0.012 4.012 6 N -0.335 5.335 7 C 0.328 3.672 8 O -0.425 6.425 9 C -0.104 4.104 10 C -0.202 4.202 11 C -0.193 4.193 12 C 0.225 3.775 13 F -0.151 7.151 14 F -0.171 7.171 15 C -0.175 4.175 16 C -0.020 4.020 17 C -0.124 4.124 18 H 0.093 0.907 19 C 0.028 3.972 20 N -0.377 5.377 21 C -0.374 4.374 22 H 0.088 0.912 23 C -0.206 4.206 24 N -0.578 5.578 25 Si 0.736 3.264 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.209 1.209 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.116 0.884 42 H 0.136 0.864 43 H 0.124 0.876 44 H 0.089 0.911 45 H 0.038 0.962 46 H 0.047 0.953 47 H 0.214 0.786 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.709 0.880 14.207 14.709 hybrid contribution -0.195 -0.054 -1.224 1.241 sum 3.514 0.826 12.982 13.475 Atomic orbital electron populations 1.21882 0.94907 1.01986 1.01746 1.21093 0.96014 0.99381 0.93867 0.91040 1.21980 0.94767 1.01502 0.98326 1.21593 0.94008 0.98890 0.86678 1.48114 1.42732 1.34844 1.07859 1.20032 0.78302 0.78920 0.89947 1.90659 1.55762 1.62792 1.33245 1.21781 0.98171 0.95631 0.94770 1.21952 0.99988 0.99037 0.99195 1.24287 0.96747 0.95224 1.03000 1.21832 0.93143 0.79229 0.83315 1.93024 1.80214 1.93696 1.48179 1.92998 1.87890 1.40002 1.96256 1.24027 1.01926 0.94397 0.97196 1.22232 0.94608 0.99840 0.85273 1.21746 0.94219 1.00932 0.95462 0.90678 1.20768 0.97142 0.94122 0.85159 1.42367 1.65561 1.28904 1.00882 1.19176 1.28167 1.06369 0.83647 0.91233 1.24696 1.00754 0.97416 0.97707 1.69600 1.42389 1.17098 1.28710 0.86237 0.78040 0.77497 0.84658 1.21749 1.21799 1.20860 0.92766 0.93185 0.91621 0.90876 0.91553 0.91613 0.89279 0.91626 0.89759 0.89965 0.87094 0.85972 0.88429 0.86400 0.87638 0.91124 0.96182 0.95293 0.78564 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.81 37.16 0.33 -1.31 16 2 C -0.08 -0.96 2.23 -90.58 -0.20 -1.17 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.31 5.36 -26.61 -0.14 -1.46 16 5 C 0.11 1.26 6.42 -3.71 -0.02 1.23 16 6 N -0.60 -7.90 2.97 -172.77 -0.51 -8.41 16 7 C 0.54 7.81 6.69 -10.99 -0.07 7.73 16 8 O -0.55 -9.14 15.59 5.55 0.09 -9.06 16 9 C -0.10 -1.36 0.70 -154.85 -0.11 -1.46 16 10 C -0.14 -1.89 8.63 37.16 0.32 -1.57 16 11 C -0.15 -2.26 5.86 -25.92 -0.15 -2.41 16 12 C 0.26 3.89 3.27 -25.92 -0.08 3.80 16 13 F -0.17 -2.81 15.49 2.25 0.03 -2.78 16 14 F -0.19 -3.03 17.41 2.25 0.04 -2.99 16 15 C -0.14 -1.76 6.68 -25.92 -0.17 -1.93 16 16 C 0.10 1.41 4.22 -3.71 -0.02 1.39 16 17 C -0.10 -1.47 1.92 -90.50 -0.17 -1.64 16 18 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 19 C 0.16 2.77 5.41 -4.04 -0.02 2.75 16 20 N -0.73 -16.65 5.38 -59.90 -0.32 -16.97 16 21 C -0.24 -6.34 9.99 -15.06 -0.15 -6.49 16 22 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 23 C -0.01 -0.25 5.50 -17.44 -0.10 -0.35 16 24 N -0.93 -26.33 13.06 55.49 0.72 -25.60 16 25 Si 0.90 21.64 29.55 -169.99 -5.02 16.62 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.79 6.29 -51.93 -0.33 0.46 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.09 1.07 7.04 -51.93 -0.37 0.71 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.14 6.16 -51.93 -0.32 0.82 16 38 H 0.08 1.13 5.53 -51.93 -0.29 0.84 16 39 H 0.11 1.54 8.09 -51.93 -0.42 1.12 16 40 H 0.12 2.08 6.53 -51.93 -0.34 1.74 16 41 H 0.10 1.11 8.10 -51.93 -0.42 0.69 16 42 H 0.12 1.49 7.72 -51.93 -0.40 1.09 16 43 H 0.11 1.60 2.34 -51.92 -0.12 1.48 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.03 0.53 6.14 -51.93 -0.32 0.21 16 47 H 0.38 8.89 6.16 -40.82 -0.25 8.64 16 48 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 370.13 15.07 5.58 5.58 Total: -1.00 -29.53 370.13 -7.51 -37.04 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -7.35 Total: 9.45 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.77 Total: -2.88 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.11 Total: -50.99 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.07 Total: -5.77 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.53 -7.51 -37.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133237639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.713 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds