Wall clock time and date at job start Tue Mar 31 2020 17:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.45806 * 2 1 4 4 C 1.53045 * 109.45228 * 119.96592 * 2 1 3 5 5 C 1.53184 * 109.31521 * 181.37979 * 4 2 1 6 6 N 1.46927 * 108.77931 * 305.36755 * 5 4 2 7 7 C 1.34771 * 120.63478 * 233.58616 * 6 5 4 8 8 O 1.21288 * 119.99693 * 355.97449 * 7 6 5 9 9 C 1.50695 * 120.00334 * 175.97109 * 7 6 5 10 10 C 1.52999 * 112.84965 * 66.01273 * 9 7 6 11 11 C 1.53780 * 113.61546 * 294.70694 * 9 7 6 12 12 C 1.53782 * 87.08461 * 220.01851 * 11 9 7 13 13 F 1.39898 * 113.61500 * 270.88770 * 12 11 9 14 14 F 1.39901 * 113.61680 * 139.98246 * 12 11 9 15 15 C 1.53777 * 87.07916 * 25.43171 * 12 11 9 16 16 C 1.46931 * 118.73590 * 53.60301 * 6 5 4 17 17 C 1.53041 * 109.46250 * 240.02818 * 2 1 3 18 18 H 1.08992 * 109.49924 * 298.60955 * 17 2 1 19 19 C 1.53003 * 109.49403 * 58.67564 * 17 2 1 20 20 N 1.46504 * 109.46855 * 184.99887 * 19 17 2 21 21 C 1.36939 * 119.99889 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99818 * 0.02562 * 21 20 19 23 23 C 1.38808 * 119.99964 * 180.02562 * 21 20 19 24 24 N 1.31612 * 120.00288 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99878 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47358 * 89.99814 * 25 23 21 27 27 H 1.48498 * 109.46951 * 209.99407 * 25 23 21 28 28 H 1.48502 * 109.47328 * 329.99735 * 25 23 21 29 29 H 1.09003 * 109.46724 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47080 * 299.96543 * 1 2 3 31 31 H 1.08996 * 109.47352 * 59.97306 * 1 2 3 32 32 H 1.08994 * 109.49619 * 301.33290 * 4 2 1 33 33 H 1.08997 * 109.49318 * 61.39998 * 4 2 1 34 34 H 1.09008 * 109.58891 * 65.15424 * 5 4 2 35 35 H 1.08998 * 109.58768 * 185.43457 * 5 4 2 36 36 H 1.09003 * 109.46911 * 54.97286 * 10 9 7 37 37 H 1.09001 * 109.47133 * 174.97021 * 10 9 7 38 38 H 1.09001 * 109.47462 * 294.96842 * 10 9 7 39 39 H 1.09000 * 113.61724 * 334.56378 * 11 9 7 40 40 H 1.09004 * 113.61804 * 105.46918 * 11 9 7 41 41 H 1.09005 * 113.61777 * 220.01912 * 15 12 11 42 42 H 1.09005 * 113.61499 * 89.11948 * 15 12 11 43 43 H 1.09009 * 109.58391 * 186.60368 * 16 6 5 44 44 H 1.09001 * 109.58384 * 66.18454 * 16 6 5 45 45 H 1.09005 * 109.47612 * 65.00255 * 19 17 2 46 46 H 1.09005 * 109.47118 * 304.99734 * 19 17 2 47 47 H 0.96993 * 120.00149 * 0.02562 * 20 19 17 48 48 H 0.96997 * 120.00497 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 1.2502 5 6 3.5711 -0.6889 1.2645 6 7 4.0677 -1.2492 0.0003 7 6 4.9617 -2.2577 0.0004 8 8 5.4192 -2.6624 1.0482 9 6 5.3930 -2.8824 -1.3014 10 6 6.1802 -1.9183 -2.1911 11 6 4.2600 -3.6170 -2.0373 12 6 5.2947 -4.6998 -2.3861 13 9 5.9792 -4.4565 -3.5817 14 9 4.7926 -6.0029 -2.3016 15 6 6.0667 -4.2546 -1.1329 16 6 3.5713 -0.6889 -1.2640 17 6 2.0399 -0.7209 -1.2500 18 1 1.6972 -1.7555 -1.2385 19 6 1.5030 -0.0189 -2.4990 20 7 1.8920 -0.7772 -3.6906 21 6 1.5207 -0.3377 -4.9333 22 1 0.9414 0.5681 -5.0349 23 6 1.8888 -1.0565 -6.0622 24 7 2.5951 -2.1601 -5.9385 25 14 1.3828 -0.4567 -7.7574 26 1 2.4307 0.4475 -8.2957 27 1 1.2188 -1.6201 -8.6656 28 1 0.0969 0.2794 -7.6587 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8903 31 1 -0.3634 0.5142 -0.8897 32 1 1.6570 -0.2207 2.1398 33 1 1.6970 -1.7554 1.2386 34 1 3.9142 0.3406 1.3677 35 1 3.9411 -1.2828 2.1002 36 1 7.0291 -1.5212 -1.6345 37 1 6.5399 -2.4489 -3.0727 38 1 5.5324 -1.0979 -2.5001 39 1 3.4663 -3.9679 -1.3777 40 1 3.8822 -3.0780 -2.9062 41 1 7.1476 -4.2302 -1.2715 42 1 5.7670 -4.7797 -0.2259 43 1 3.9418 -1.2849 -2.0982 44 1 3.9144 0.3406 -1.3671 45 1 1.9182 0.9873 -2.5571 46 1 0.4159 0.0393 -2.4441 47 1 2.4119 -1.5909 -3.5993 48 1 2.8527 -2.6622 -6.7274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133237639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:51 Heat of formation + Delta-G solvation = -123.719186 kcal Electronic energy + Delta-G solvation = -31151.340831 eV Core-core repulsion = 26877.007758 eV Total energy + Delta-G solvation = -4274.333073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.89168 -48.22858 -41.97144 -39.66547 -38.32669 -36.43901 -35.06598 -33.59369 -31.61535 -30.40443 -29.23559 -27.49368 -27.09551 -25.87909 -24.92859 -23.85809 -22.62927 -21.66746 -20.94004 -19.70216 -19.09884 -18.83403 -17.83205 -17.79822 -17.06675 -16.68566 -16.61388 -16.32648 -15.64452 -15.52702 -15.35982 -15.25393 -15.12398 -15.00115 -14.65494 -14.55850 -14.34945 -14.23954 -13.96391 -13.83732 -13.37892 -13.22149 -13.07123 -13.03320 -12.93291 -12.78185 -12.62802 -12.55684 -12.31639 -12.16897 -12.10930 -11.96250 -11.83499 -11.71818 -11.44937 -11.25281 -11.11657 -10.87507 -10.69554 -9.66855 -8.90326 -7.88636 -5.15399 1.43239 1.50440 1.51198 1.58780 1.87621 2.41080 2.60052 2.70825 3.08796 3.12620 3.22069 3.45911 3.56340 3.68465 3.84778 3.88345 4.00178 4.07565 4.16710 4.24824 4.32797 4.35301 4.46150 4.54772 4.56748 4.63000 4.66393 4.76368 4.76672 4.82293 4.84449 4.89753 4.92565 4.93408 4.98151 5.10038 5.14618 5.21700 5.23362 5.28397 5.47590 5.54609 5.57477 5.60742 6.28708 6.33128 7.02432 7.41433 8.16614 8.40294 9.33390 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.008671 B = 0.005837 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3228.265924 B = 4795.428435 C = 7271.260306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.083 0.917 4 C -0.118 4.118 5 C 0.106 3.894 6 N -0.598 5.598 7 C 0.541 3.459 8 O -0.568 6.568 9 C -0.095 4.095 10 C -0.141 4.141 11 C -0.151 4.151 12 C 0.252 3.748 13 F -0.182 7.182 14 F -0.198 7.198 15 C -0.123 4.123 16 C 0.108 3.892 17 C -0.093 4.093 18 H 0.059 0.941 19 C 0.156 3.844 20 N -0.742 5.742 21 C -0.241 4.241 22 H 0.073 0.927 23 C -0.066 4.066 24 N -0.958 5.958 25 Si 0.961 3.039 26 H -0.289 1.289 27 H -0.301 1.301 28 H -0.273 1.273 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.025 0.975 46 H 0.030 0.970 47 H 0.375 0.625 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.353 2.442 15.502 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.102 0.898 4 C -0.156 4.156 5 C -0.015 4.015 6 N -0.329 5.329 7 C 0.329 3.671 8 O -0.448 6.448 9 C -0.098 4.098 10 C -0.198 4.198 11 C -0.189 4.189 12 C 0.215 3.785 13 F -0.163 7.163 14 F -0.179 7.179 15 C -0.161 4.161 16 C -0.015 4.015 17 C -0.113 4.113 18 H 0.078 0.922 19 C 0.029 3.971 20 N -0.386 5.386 21 C -0.373 4.373 22 H 0.091 0.909 23 C -0.259 4.259 24 N -0.609 5.609 25 Si 0.791 3.209 26 H -0.217 1.217 27 H -0.228 1.228 28 H -0.198 1.198 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.141 0.859 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.043 0.957 46 H 0.047 0.953 47 H 0.208 0.792 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.493 2.345 15.922 16.468 hybrid contribution -0.204 -0.446 -1.710 1.779 sum 3.289 1.900 14.212 14.710 Atomic orbital electron populations 1.21853 0.94457 1.01687 1.02288 1.21074 0.96315 0.99676 0.92717 0.89818 1.21926 0.93881 1.01110 0.98721 1.21793 0.94673 0.99657 0.85389 1.48124 1.42107 1.34338 1.08335 1.20058 0.78358 0.79012 0.89669 1.90651 1.56708 1.63561 1.33867 1.21743 0.97610 0.96025 0.94407 1.21913 1.00275 0.98561 0.99034 1.24208 0.97248 0.95266 1.02202 1.22117 0.93754 0.78845 0.83740 1.92997 1.80433 1.93755 1.49121 1.92978 1.88098 1.40527 1.96284 1.23978 1.02789 0.93382 0.95917 1.22098 0.94261 0.99914 0.85191 1.21605 0.94403 1.00001 0.95277 0.92209 1.20903 0.97181 0.94055 0.84923 1.42557 1.65353 1.29140 1.01503 1.19529 1.26795 1.05915 0.85020 0.90900 1.25365 1.01793 0.98016 1.00771 1.69750 1.44069 1.18288 1.28769 0.85329 0.77992 0.76611 0.80941 1.21659 1.22783 1.19785 0.93507 0.90851 0.92861 0.88035 0.92549 0.89753 0.89721 0.89910 0.90524 0.90837 0.86666 0.88662 0.86551 0.85868 0.89224 0.90361 0.95677 0.95262 0.79216 0.94277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.81 71.98 0.63 -2.24 16 2 C -0.08 -1.60 2.23 -10.77 -0.02 -1.62 16 3 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 4 C -0.12 -2.09 5.36 30.67 0.16 -1.92 16 5 C 0.11 2.13 6.42 86.36 0.55 2.68 16 6 N -0.60 -14.74 2.97 -818.90 -2.43 -17.17 16 7 C 0.54 15.00 6.69 87.66 0.59 15.58 16 8 O -0.57 -18.14 15.59 -3.06 -0.05 -18.19 16 9 C -0.09 -2.51 0.70 -52.40 -0.04 -2.55 16 10 C -0.14 -3.62 8.63 71.98 0.62 -3.00 16 11 C -0.15 -4.53 5.86 31.12 0.18 -4.35 16 12 C 0.25 7.57 3.27 31.12 0.10 7.67 16 13 F -0.18 -6.16 15.49 44.97 0.70 -5.46 16 14 F -0.20 -6.36 17.41 44.97 0.78 -5.58 16 15 C -0.12 -3.03 6.68 31.12 0.21 -2.82 16 16 C 0.11 2.86 4.22 86.36 0.36 3.23 16 17 C -0.09 -2.54 1.92 -10.72 -0.02 -2.56 16 18 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 19 C 0.16 5.44 5.41 86.38 0.47 5.90 16 20 N -0.74 -33.98 5.38 -343.43 -1.85 -35.83 16 21 C -0.24 -12.58 9.99 84.03 0.84 -11.74 16 22 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 23 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 24 N -0.96 -55.54 13.06 21.65 0.28 -55.26 16 25 Si 0.96 44.79 29.55 68.60 2.03 46.82 16 26 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 27 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 28 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.18 6.29 -2.39 -0.02 1.17 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.08 1.84 7.04 -2.39 -0.02 1.82 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 2.09 6.16 -2.39 -0.01 2.08 16 38 H 0.07 2.02 5.53 -2.39 -0.01 2.01 16 39 H 0.12 3.27 8.09 -2.39 -0.02 3.25 16 40 H 0.09 3.43 6.53 -2.38 -0.02 3.41 16 41 H 0.12 2.45 8.10 -2.38 -0.02 2.43 16 42 H 0.12 2.96 7.72 -2.38 -0.02 2.94 16 43 H 0.09 2.74 2.34 -2.38 -0.01 2.74 16 44 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.03 1.04 6.14 -2.38 -0.01 1.03 16 47 H 0.37 17.99 6.16 -92.71 -0.57 17.42 16 48 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -62.93 370.13 4.98 -57.95 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.41 Total: 33.62 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 5.11 Total: -0.90 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -4.00 Total: -108.26 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.05 Total: -18.19 kcal Atomic # 9 Polarization: -12.52 SS G_CDS: 1.48 Total: -11.04 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -62.93 4.98 -57.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133237639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.767 kcal (2) G-P(sol) polarization free energy of solvation -62.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds