Wall clock time and date at job start Tue Mar 31 2020 15:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21578 * 120.00340 * 359.97438 * 14 13 3 16 16 C 1.47670 * 119.99671 * 180.02562 * 14 13 3 17 17 C 1.41840 * 120.35018 * 359.72306 * 16 14 13 18 18 C 1.34544 * 120.22370 * 179.70956 * 17 16 14 19 19 N 1.36638 * 120.85493 * 0.56957 * 18 17 16 20 20 C 1.37438 * 120.76262 * 359.70968 * 19 18 17 21 21 C 1.38417 * 120.34791 * 179.97438 * 16 14 13 22 22 N 1.32409 * 106.85359 * 180.02562 * 20 19 18 23 23 N 1.28694 * 109.26916 * 359.97438 * 22 20 19 24 24 C 1.30983 * 110.22826 * 0.02562 * 23 22 20 25 25 C 1.50709 * 126.15240 * 179.97438 * 24 23 22 26 26 C 1.53002 * 109.46742 * 240.03906 * 25 24 23 27 27 C 1.52994 * 109.47028 * 0.03850 * 25 24 23 28 28 C 1.52995 * 109.47104 * 120.04114 * 25 24 23 29 29 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 30 30 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 32 32 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 33 33 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 34 34 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 36 36 H 1.07999 * 119.88716 * 359.97438 * 17 16 14 37 37 H 1.07999 * 119.56805 * 180.27752 * 18 17 16 38 38 H 1.08000 * 120.50586 * 0.02562 * 21 16 14 39 39 H 1.09007 * 109.46905 * 59.99738 * 26 25 24 40 40 H 1.08996 * 109.47235 * 179.97438 * 26 25 24 41 41 H 1.08998 * 109.47373 * 300.00522 * 26 25 24 42 42 H 1.09000 * 109.47192 * 60.00578 * 27 25 24 43 43 H 1.08996 * 109.47026 * 180.02562 * 27 25 24 44 44 H 1.09006 * 109.47252 * 300.00029 * 27 25 24 45 45 H 1.08998 * 109.47347 * 60.00106 * 28 25 24 46 46 H 1.09008 * 109.46980 * 179.97438 * 28 25 24 47 47 H 1.09000 * 109.47352 * 299.99566 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3412 2.6325 0.4320 16 6 0.0447 3.3249 2.6288 17 6 0.9428 3.3621 3.7260 18 6 0.5867 3.9697 4.8724 19 7 -0.6436 4.5492 5.0055 20 6 -1.5454 4.5304 3.9686 21 6 -1.2034 3.9098 2.7548 22 7 -2.6299 5.1613 4.3915 23 7 -2.4465 5.5560 5.6026 24 6 -1.2541 5.2067 6.0171 25 6 -0.6679 5.4874 7.3768 26 6 0.6016 6.3272 7.2214 27 6 -1.6862 6.2542 8.2228 28 6 -0.3238 4.1658 8.0666 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.8770 0.4827 -2.1133 35 1 2.2720 2.1230 1.9979 36 1 1.9174 2.9048 3.6395 37 1 1.2805 3.9957 5.6996 38 1 -1.9041 3.8889 1.9333 39 1 0.3564 7.2687 6.7299 40 1 1.0254 6.5306 8.2048 41 1 1.3271 5.7809 6.6186 42 1 -2.5906 5.6559 8.3336 43 1 -1.2621 6.4576 9.2061 44 1 -1.9314 7.1958 7.7314 45 1 0.4017 3.6195 7.4639 46 1 0.1006 4.3688 9.0499 47 1 -1.2282 3.5675 8.1773 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156390987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:31 Heat of formation + Delta-G solvation = 64.477943 kcal Electronic energy + Delta-G solvation = -28399.228020 eV Core-core repulsion = 24583.744973 eV Total energy + Delta-G solvation = -3815.483047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.85516 -39.82038 -37.90580 -37.48269 -35.54347 -33.79313 -32.59139 -31.83472 -31.06044 -29.44211 -27.84568 -27.82136 -27.55887 -24.96255 -24.10847 -23.04344 -22.71165 -21.14677 -20.24831 -19.94587 -18.37654 -17.76975 -16.88274 -16.80510 -16.35721 -15.76468 -15.63660 -15.33587 -14.85443 -14.62140 -14.47445 -14.12697 -13.77807 -13.51854 -13.13506 -12.86851 -12.80254 -12.75646 -12.52608 -12.43681 -12.15620 -12.06662 -11.90060 -11.82304 -11.76221 -11.58579 -11.43353 -11.21109 -11.03818 -10.97497 -10.71558 -10.67199 -10.01731 -9.78568 -9.74083 -9.42342 -9.33443 -8.85407 -8.34853 -8.17765 -6.29934 -4.33545 0.19857 0.73881 2.02537 2.40998 2.76306 3.17444 3.30378 3.34079 3.42826 3.64690 3.69895 3.96222 4.18913 4.23826 4.31609 4.41602 4.43734 4.65032 4.70013 4.79228 5.03808 5.05815 5.14230 5.21682 5.24761 5.32879 5.40652 5.46649 5.47363 5.61768 5.65170 5.77382 5.77578 5.82205 5.87852 5.94299 5.96206 6.03427 6.08941 6.55245 6.58506 6.61635 6.72603 6.85504 7.09101 7.17147 7.37977 7.97965 8.31190 8.34817 8.60276 8.71648 9.30029 10.81854 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023264 B = 0.002740 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.289981 B =10217.220708 C =10906.526376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.259 1.259 12 H -0.293 1.293 13 N -0.688 5.688 14 C 0.548 3.452 15 O -0.535 6.535 16 C -0.098 4.098 17 C -0.107 4.107 18 C 0.051 3.949 19 N -0.376 5.376 20 C 0.183 3.817 21 C -0.010 4.010 22 N -0.276 5.276 23 N -0.248 5.248 24 C 0.153 3.847 25 C 0.023 3.977 26 C -0.148 4.148 27 C -0.130 4.130 28 C -0.148 4.148 29 H 0.054 0.946 30 H 0.033 0.967 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.268 0.732 35 H 0.394 0.606 36 H 0.163 0.837 37 H 0.173 0.827 38 H 0.171 0.829 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.074 0.926 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.921 6.484 19.353 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.071 0.929 5 C -0.576 4.576 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.711 3.289 10 H -0.202 1.202 11 H -0.184 1.184 12 H -0.221 1.221 13 N -0.336 5.336 14 C 0.333 3.667 15 O -0.413 6.413 16 C -0.108 4.108 17 C -0.128 4.128 18 C -0.070 4.070 19 N -0.055 5.055 20 C -0.064 4.064 21 C -0.033 4.033 22 N -0.123 5.123 23 N -0.088 5.088 24 C -0.109 4.109 25 C 0.020 3.980 26 C -0.206 4.206 27 C -0.188 4.188 28 C -0.205 4.205 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.229 0.771 36 H 0.180 0.820 37 H 0.190 0.810 38 H 0.188 0.812 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.776 7.075 18.639 22.204 hybrid contribution 1.300 -1.117 -0.493 1.784 sum -8.476 5.958 18.146 20.895 Atomic orbital electron populations 1.21889 0.96861 0.99262 1.02261 1.22300 0.94412 0.99745 1.01324 1.19241 0.95860 0.88602 0.82369 0.92945 1.20996 0.88376 1.40209 1.08040 0.90142 1.24821 0.94876 0.95040 0.97647 1.69857 1.08702 1.44226 1.29845 0.86917 0.81003 0.79995 0.80946 1.20163 1.18357 1.22080 1.46114 1.14186 1.55077 1.18241 1.17781 0.83168 0.79515 0.86283 1.90794 1.51435 1.59689 1.39420 1.20411 0.94219 1.00490 0.95646 1.21098 1.01185 0.99405 0.91131 1.21517 0.85874 0.98862 1.00787 1.43426 1.12926 1.36600 1.12574 1.22186 0.88624 1.04293 0.91344 1.20703 0.96355 0.92630 0.93588 1.75074 1.18564 1.14324 1.04345 1.74299 1.12422 1.17560 1.04554 1.24604 0.91827 1.01224 0.93241 1.19072 0.95986 0.97097 0.85834 1.22009 0.95526 1.00024 1.03022 1.21716 0.98012 1.00576 0.98487 1.22005 1.02219 0.95397 1.00928 0.92721 0.94797 0.93037 0.92566 0.92179 0.92166 0.77118 0.81985 0.80985 0.81153 0.91753 0.90671 0.92465 0.91538 0.91563 0.91525 0.92492 0.90675 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.51 37.16 0.32 -2.45 16 2 C -0.14 -2.90 5.11 -26.73 -0.14 -3.04 16 3 C 0.24 5.33 1.83 -69.08 -0.13 5.21 16 4 H 0.05 1.29 6.63 -51.93 -0.34 0.95 16 5 C -0.54 -13.64 9.31 -34.44 -0.32 -13.96 16 6 H 0.08 2.13 7.98 -52.49 -0.42 1.71 16 7 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 8 N -0.89 -25.34 13.96 55.43 0.77 -24.57 16 9 Si 0.88 20.88 24.41 -169.99 -4.15 16.73 16 10 H -0.27 -6.31 6.83 56.52 0.39 -5.93 16 11 H -0.26 -6.06 6.53 56.52 0.37 -5.69 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 N -0.69 -12.19 4.98 -55.93 -0.28 -12.46 16 14 C 0.55 9.37 6.34 -12.41 -0.08 9.29 16 15 O -0.53 -10.83 13.50 5.30 0.07 -10.76 16 16 C -0.10 -1.31 5.90 -104.60 -0.62 -1.93 16 17 C -0.11 -1.07 9.47 -39.51 -0.37 -1.45 16 18 C 0.05 0.46 9.47 -16.72 -0.16 0.30 16 19 N -0.38 -4.39 2.93 -59.96 -0.18 -4.57 16 20 C 0.18 2.61 7.90 -155.98 -1.23 1.38 16 21 C -0.01 -0.14 9.70 -38.65 -0.37 -0.52 16 22 N -0.28 -4.39 12.33 31.12 0.38 -4.01 16 23 N -0.25 -3.59 11.51 32.82 0.38 -3.21 16 24 C 0.15 1.77 6.33 -154.85 -0.98 0.79 16 25 C 0.02 0.17 0.87 -155.66 -0.14 0.04 16 26 C -0.15 -0.91 8.40 37.16 0.31 -0.60 16 27 C -0.13 -0.92 7.97 37.15 0.30 -0.63 16 28 C -0.15 -0.89 8.40 37.15 0.31 -0.58 16 29 H 0.05 1.10 7.84 -51.93 -0.41 0.70 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.95 5.64 -51.93 -0.29 0.66 16 32 H 0.06 1.25 3.22 -51.93 -0.17 1.08 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.39 5.86 6.60 -40.82 -0.27 5.59 16 36 H 0.16 1.25 6.46 -52.49 -0.34 0.92 16 37 H 0.17 0.94 5.71 -52.49 -0.30 0.64 16 38 H 0.17 2.35 7.67 -52.49 -0.40 1.95 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.33 6.24 -51.93 -0.32 0.01 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.32 6.23 -51.93 -0.32 -0.01 16 46 H 0.07 0.32 8.14 -51.92 -0.42 -0.11 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -32.26 366.86 -7.44 -39.70 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.58 Total: 3.72 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -3.40 Total: -6.10 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 1.08 Total: -48.82 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.07 Total: -10.76 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.15 Total: 16.73 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.26 -7.44 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156390987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.179 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds