Wall clock time and date at job start Tue Mar 31 2020 15:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21578 * 120.00340 * 359.97438 * 14 13 3 16 16 C 1.47670 * 119.99671 * 180.02562 * 14 13 3 17 17 C 1.41840 * 120.35018 * 359.72306 * 16 14 13 18 18 C 1.34544 * 120.22370 * 179.70956 * 17 16 14 19 19 N 1.36638 * 120.85493 * 0.56957 * 18 17 16 20 20 C 1.37438 * 120.76262 * 359.70968 * 19 18 17 21 21 C 1.38417 * 120.34791 * 179.97438 * 16 14 13 22 22 N 1.32409 * 106.85359 * 180.02562 * 20 19 18 23 23 N 1.28694 * 109.26916 * 359.97438 * 22 20 19 24 24 C 1.30983 * 110.22826 * 0.02562 * 23 22 20 25 25 C 1.50709 * 126.15240 * 179.97438 * 24 23 22 26 26 C 1.53002 * 109.46742 * 240.03906 * 25 24 23 27 27 C 1.52994 * 109.47028 * 0.03850 * 25 24 23 28 28 C 1.52995 * 109.47104 * 120.04114 * 25 24 23 29 29 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 30 30 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 32 32 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 33 33 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 34 34 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 36 36 H 1.07999 * 119.88716 * 359.97438 * 17 16 14 37 37 H 1.07999 * 119.56805 * 180.27752 * 18 17 16 38 38 H 1.08000 * 120.50586 * 0.02562 * 21 16 14 39 39 H 1.09007 * 109.46905 * 59.99738 * 26 25 24 40 40 H 1.08996 * 109.47235 * 179.97438 * 26 25 24 41 41 H 1.08998 * 109.47373 * 300.00522 * 26 25 24 42 42 H 1.09000 * 109.47192 * 60.00578 * 27 25 24 43 43 H 1.08996 * 109.47026 * 180.02562 * 27 25 24 44 44 H 1.09006 * 109.47252 * 300.00029 * 27 25 24 45 45 H 1.08998 * 109.47347 * 60.00106 * 28 25 24 46 46 H 1.09008 * 109.46980 * 179.97438 * 28 25 24 47 47 H 1.09000 * 109.47352 * 299.99566 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3412 2.6325 0.4320 16 6 0.0447 3.3249 2.6288 17 6 0.9428 3.3621 3.7260 18 6 0.5867 3.9697 4.8724 19 7 -0.6436 4.5492 5.0055 20 6 -1.5454 4.5304 3.9686 21 6 -1.2034 3.9098 2.7548 22 7 -2.6299 5.1613 4.3915 23 7 -2.4465 5.5560 5.6026 24 6 -1.2541 5.2067 6.0171 25 6 -0.6679 5.4874 7.3768 26 6 0.6016 6.3272 7.2214 27 6 -1.6862 6.2542 8.2228 28 6 -0.3238 4.1658 8.0666 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.8770 0.4827 -2.1133 35 1 2.2720 2.1230 1.9979 36 1 1.9174 2.9048 3.6395 37 1 1.2805 3.9957 5.6996 38 1 -1.9041 3.8889 1.9333 39 1 0.3564 7.2687 6.7299 40 1 1.0254 6.5306 8.2048 41 1 1.3271 5.7809 6.6186 42 1 -2.5906 5.6559 8.3336 43 1 -1.2621 6.4576 9.2061 44 1 -1.9314 7.1958 7.7314 45 1 0.4017 3.6195 7.4639 46 1 0.1006 4.3688 9.0499 47 1 -1.2282 3.5675 8.1773 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156390987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:30 Heat of formation + Delta-G solvation = 44.556829 kcal Electronic energy + Delta-G solvation = -28400.091864 eV Core-core repulsion = 24583.744973 eV Total energy + Delta-G solvation = -3816.346891 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.81993 -41.18557 -38.98412 -38.11836 -37.17891 -34.86066 -34.40179 -33.34083 -32.14053 -30.42685 -29.47475 -28.25301 -28.24032 -26.19280 -25.03143 -24.45917 -23.90010 -22.59070 -21.49705 -20.96347 -19.76765 -18.77950 -18.26758 -17.88642 -17.76347 -17.09406 -16.59759 -16.45482 -16.21446 -15.92559 -15.25693 -15.08766 -14.98946 -14.72313 -14.49785 -14.20639 -13.85428 -13.67244 -13.63495 -13.57359 -13.25222 -13.08266 -12.97637 -12.77523 -12.73996 -12.65602 -12.48467 -12.42128 -12.30767 -12.04362 -11.88293 -11.84020 -11.55229 -11.40767 -11.23296 -10.99031 -10.84468 -10.72906 -9.86826 -9.22520 -8.36773 -6.41833 -0.82813 -0.16639 1.13844 1.28461 1.37945 1.46086 1.47136 1.62159 2.11676 2.27233 2.43876 2.86536 2.99840 3.20329 3.29623 3.46747 3.51225 3.73000 3.89206 3.96165 4.12004 4.19387 4.24493 4.33433 4.46298 4.51198 4.58961 4.67104 4.75814 4.79446 4.81153 4.82392 4.88285 4.95254 4.96474 4.98694 5.02654 5.07981 5.12196 5.22080 5.24322 5.32041 5.39151 5.40883 5.52089 5.58916 5.73749 6.13142 6.59788 6.76590 7.17632 7.31032 7.33945 8.77836 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023264 B = 0.002740 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.289981 B =10217.220708 C =10906.526376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.249 3.751 4 H 0.025 0.975 5 C -0.530 4.530 6 H 0.064 0.936 7 C 0.033 3.967 8 N -0.931 5.931 9 Si 0.929 3.071 10 H -0.260 1.260 11 H -0.260 1.260 12 H -0.297 1.297 13 N -0.683 5.683 14 C 0.550 3.450 15 O -0.569 6.569 16 C -0.090 4.090 17 C -0.112 4.112 18 C 0.071 3.929 19 N -0.378 5.378 20 C 0.173 3.827 21 C -0.024 4.024 22 N -0.316 5.316 23 N -0.282 5.282 24 C 0.169 3.831 25 C 0.021 3.979 26 C -0.146 4.146 27 C -0.129 4.129 28 C -0.146 4.146 29 H 0.036 0.964 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.269 0.731 35 H 0.410 0.590 36 H 0.191 0.809 37 H 0.220 0.780 38 H 0.159 0.841 39 H 0.048 0.952 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.051 0.949 45 H 0.066 0.934 46 H 0.101 0.899 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.037 5.974 22.136 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.176 4.176 3 C 0.144 3.856 4 H 0.043 0.957 5 C -0.568 4.568 6 H 0.083 0.917 7 C -0.167 4.167 8 N -0.570 5.570 9 Si 0.757 3.243 10 H -0.186 1.186 11 H -0.185 1.185 12 H -0.225 1.225 13 N -0.333 5.333 14 C 0.337 3.663 15 O -0.450 6.450 16 C -0.100 4.100 17 C -0.134 4.134 18 C -0.049 4.049 19 N -0.057 5.057 20 C -0.076 4.076 21 C -0.046 4.046 22 N -0.162 5.162 23 N -0.122 5.122 24 C -0.095 4.095 25 C 0.019 3.981 26 C -0.204 4.204 27 C -0.187 4.187 28 C -0.203 4.203 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.247 0.753 36 H 0.208 0.792 37 H 0.236 0.764 38 H 0.177 0.823 39 H 0.068 0.932 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.120 0.880 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.914 6.574 21.456 24.146 hybrid contribution 1.031 -0.865 -1.241 1.831 sum -7.884 5.708 20.215 22.436 Atomic orbital electron populations 1.21785 0.95427 1.00614 1.01563 1.22226 0.95619 0.98413 1.01386 1.18866 0.93529 0.89687 0.83475 0.95689 1.21244 0.90024 1.38479 1.07064 0.91743 1.25466 0.95585 0.95934 0.99704 1.69956 1.10155 1.46105 1.30798 0.86146 0.79469 0.80077 0.78595 1.18598 1.18456 1.22469 1.45841 1.14942 1.55096 1.17412 1.18169 0.82307 0.78744 0.87059 1.90782 1.52338 1.60772 1.41083 1.20102 0.94710 1.00224 0.95011 1.21318 1.01657 1.00159 0.90217 1.22252 0.84964 0.96145 1.01559 1.43625 1.13488 1.36696 1.11881 1.22116 0.89070 1.04468 0.91980 1.20564 0.96677 0.93781 0.93609 1.74982 1.20062 1.15830 1.05375 1.74225 1.14457 1.19072 1.04415 1.25471 0.90868 0.98937 0.94189 1.19394 0.96582 0.98568 0.83593 1.22037 0.94670 0.99014 1.04684 1.21731 0.97714 0.99502 0.99766 1.22031 1.02017 0.93995 1.02295 0.94444 0.92348 0.92771 0.93783 0.90742 0.92127 0.75278 0.79184 0.76395 0.82317 0.93235 0.87995 0.91528 0.92927 0.88654 0.93019 0.91483 0.88019 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 8.51 71.98 0.61 -4.37 16 2 C -0.14 -5.53 5.11 30.60 0.16 -5.37 16 3 C 0.25 10.81 1.83 44.24 0.08 10.89 16 4 H 0.03 1.24 6.63 -2.39 -0.02 1.23 16 5 C -0.53 -26.73 9.31 25.60 0.24 -26.49 16 6 H 0.06 3.39 7.98 -2.91 -0.02 3.37 16 7 C 0.03 1.78 5.45 84.65 0.46 2.24 16 8 N -0.93 -53.46 13.96 21.45 0.30 -53.16 16 9 Si 0.93 42.97 24.41 68.60 1.67 44.64 16 10 H -0.26 -11.33 6.83 99.48 0.68 -10.65 16 11 H -0.26 -11.95 6.53 99.48 0.65 -11.30 16 12 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 13 N -0.68 -23.34 4.98 -449.13 -2.24 -25.57 16 14 C 0.55 18.46 6.34 86.73 0.55 19.01 16 15 O -0.57 -23.27 13.50 -3.96 -0.05 -23.32 16 16 C -0.09 -2.33 5.90 -19.85 -0.12 -2.45 16 17 C -0.11 -1.91 9.47 22.31 0.21 -1.70 16 18 C 0.07 1.02 9.47 83.10 0.79 1.80 16 19 N -0.38 -8.10 2.93 -343.60 -1.01 -9.11 16 20 C 0.17 4.91 7.90 133.93 1.06 5.97 16 21 C -0.02 -0.66 9.70 22.87 0.22 -0.44 16 22 N -0.32 -10.38 12.33 -55.46 -0.68 -11.06 16 23 N -0.28 -8.28 11.51 -50.08 -0.58 -8.86 16 24 C 0.17 3.65 6.33 137.93 0.87 4.52 16 25 C 0.02 0.26 0.87 -52.93 -0.05 0.22 16 26 C -0.15 -1.24 8.40 71.98 0.60 -0.64 16 27 C -0.13 -1.59 7.97 71.98 0.57 -1.02 16 28 C -0.15 -1.17 8.40 71.98 0.60 -0.57 16 29 H 0.04 1.48 7.84 -2.39 -0.02 1.46 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.93 5.64 -2.39 -0.01 1.91 16 32 H 0.04 1.88 3.22 -2.38 -0.01 1.87 16 33 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 34 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 35 H 0.41 11.28 6.60 -92.71 -0.61 10.66 16 36 H 0.19 2.12 6.46 -2.91 -0.02 2.10 16 37 H 0.22 1.05 5.71 -2.91 -0.02 1.04 16 38 H 0.16 4.68 7.67 -2.91 -0.02 4.66 16 39 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.07 0.44 6.24 -2.39 -0.01 0.43 16 42 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.07 0.41 6.23 -2.39 -0.01 0.39 16 46 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 47 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -73.05 366.86 4.60 -68.45 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.31 Total: 16.38 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 6.87 Total: 1.62 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -4.20 Total: -107.76 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.67 Total: 44.64 kcal Total: -73.05 4.60 -68.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156390987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.004 kcal (2) G-P(sol) polarization free energy of solvation -73.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds