Wall clock time and date at job start Tue Mar 31 2020 15:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 H 1.08998 * 109.46996 * 175.06328 * 3 2 1 5 5 C 1.52997 * 109.47083 * 55.06405 * 3 2 1 6 6 C 1.53001 * 109.47284 * 65.00069 * 5 3 2 7 7 F 1.39900 * 109.47015 * 174.99832 * 6 5 3 8 8 F 1.39898 * 109.46678 * 294.99816 * 6 5 3 9 9 C 1.50699 * 109.47113 * 295.06205 * 3 2 1 10 10 O 1.21278 * 120.00011 * 120.04882 * 9 3 2 11 11 N 1.34783 * 120.00038 * 300.04921 * 9 3 2 12 12 C 1.46496 * 119.99827 * 175.86213 * 11 9 3 13 13 C 1.52997 * 109.46981 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.47225 * 179.97438 * 13 12 11 15 15 C 1.29455 * 117.69429 * 95.00072 * 14 13 12 16 16 C 1.50316 * 123.65445 * 180.86142 * 15 14 13 17 17 N 1.47012 * 109.16325 * 349.01966 * 16 15 14 18 18 C 1.36943 * 121.37424 * 222.96838 * 17 16 15 19 19 H 1.07996 * 119.99869 * 145.50200 * 18 17 16 20 20 C 1.38809 * 119.99898 * 325.51042 * 18 17 16 21 21 N 1.31612 * 120.00395 * 357.27819 * 20 18 17 22 22 Si 1.86807 * 119.99674 * 177.28538 * 20 18 17 23 23 H 1.48493 * 109.47215 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47175 * 119.99908 * 22 20 18 25 25 H 1.48503 * 109.46675 * 239.99683 * 22 20 18 26 26 C 1.47333 * 117.25267 * 42.94944 * 17 16 15 27 27 C 1.49967 * 117.69660 * 274.73700 * 14 13 12 28 28 H 1.08999 * 109.47418 * 174.67783 * 1 2 3 29 29 H 1.09000 * 109.47390 * 54.67433 * 1 2 3 30 30 H 1.09000 * 109.47038 * 294.67222 * 1 2 3 31 31 H 1.09002 * 109.47232 * 120.00156 * 2 1 3 32 32 H 1.08999 * 109.47053 * 239.99917 * 2 1 3 33 33 H 1.09007 * 109.47135 * 185.00095 * 5 3 2 34 34 H 1.08997 * 109.47194 * 304.99698 * 5 3 2 35 35 H 1.09004 * 109.47145 * 54.99741 * 6 5 3 36 36 H 0.97002 * 119.99932 * 355.86219 * 11 9 3 37 37 H 1.09000 * 109.47209 * 299.99637 * 12 11 9 38 38 H 1.08997 * 109.47547 * 60.00105 * 12 11 9 39 39 H 1.09002 * 109.47484 * 299.99937 * 13 12 11 40 40 H 1.09005 * 109.47601 * 59.99713 * 13 12 11 41 41 H 1.08008 * 118.17086 * 0.87838 * 15 14 13 42 42 H 1.08992 * 109.52745 * 108.92136 * 16 15 14 43 43 H 1.08999 * 109.52130 * 229.11994 * 16 15 14 44 44 H 0.96998 * 120.00067 * 180.02562 * 21 20 18 45 45 H 1.09007 * 109.77935 * 57.80757 * 26 17 16 46 46 H 1.08996 * 109.78073 * 178.62291 * 26 17 16 47 47 H 1.09002 * 109.32004 * 281.29227 * 27 14 13 48 48 H 1.09007 * 109.31059 * 40.72048 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4438 0.0884 5 6 1.4311 2.1987 1.1825 6 6 1.9374 1.5904 2.4920 7 9 1.4724 2.3513 3.5700 8 9 1.4662 0.2784 2.6095 9 6 1.6400 2.1167 -1.2870 10 8 0.9378 3.1052 -1.2610 11 7 2.0625 1.6211 -2.4671 12 6 1.6006 2.2213 -3.7211 13 6 2.2241 1.4762 -4.9030 14 6 1.7485 2.0931 -6.1931 15 6 2.5009 2.9911 -6.7439 16 6 2.1486 3.7053 -8.0188 17 7 0.9936 3.0415 -8.6404 18 6 0.9473 2.8056 -9.9886 19 1 0.4663 1.9148 -10.3647 20 6 1.5189 3.7113 -10.8717 21 7 2.0580 4.8227 -10.4174 22 14 1.5229 3.3527 -12.7050 23 1 0.8605 2.0475 -12.9555 24 1 0.7884 4.4265 -13.4210 25 1 2.9235 3.2988 -13.1957 26 6 -0.1120 2.6400 -7.7532 27 6 0.4398 1.6192 -6.7516 28 1 -0.3634 -1.0232 -0.0953 29 1 -0.3634 0.5942 -0.8384 30 1 -0.3633 0.4290 0.9339 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.7233 3.2476 1.1323 34 1 0.3446 2.1218 1.1423 35 1 3.0274 1.5865 2.4933 36 1 2.6724 0.8671 -2.4860 37 1 0.5145 2.1503 -3.7795 38 1 1.8986 3.2692 -3.7538 39 1 3.3102 1.5466 -4.8449 40 1 1.9258 0.4283 -4.8702 41 1 3.4339 3.2409 -6.2605 42 1 1.8969 4.7425 -7.7977 43 1 2.9980 3.6729 -8.7011 44 1 2.4571 5.4557 -11.0345 45 1 -0.4951 3.5123 -7.2234 46 1 -0.9094 2.1845 -8.3403 47 1 0.5865 0.6616 -7.2511 48 1 -0.2746 1.4926 -5.9380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160314929.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:56 Heat of formation + Delta-G solvation = -125.057315 kcal Electronic energy + Delta-G solvation = -28273.250472 eV Core-core repulsion = 23998.859373 eV Total energy + Delta-G solvation = -4274.391099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.38932 -47.38978 -40.31291 -37.95234 -36.19024 -35.42848 -33.56700 -31.44243 -31.08408 -29.87751 -28.94396 -27.18027 -25.21966 -23.83626 -23.20406 -22.59155 -21.90436 -20.95839 -19.84219 -18.20504 -17.85308 -17.61301 -17.01842 -16.30150 -16.23305 -15.96239 -15.59484 -15.26586 -14.95389 -14.66519 -14.13646 -14.09592 -13.85331 -13.76101 -13.55533 -13.38220 -13.33477 -13.18632 -12.82684 -12.63072 -12.41805 -12.21153 -12.01048 -11.65195 -11.59040 -11.43574 -11.33698 -11.27436 -11.08405 -11.01615 -10.86833 -10.79721 -10.32005 -10.25934 -9.93300 -9.87285 -9.52837 -9.18958 -8.63973 -7.93988 -6.56442 -5.80571 -3.30219 2.41838 2.74144 3.03441 3.35797 3.43124 3.45198 3.49688 3.82770 3.93342 4.14207 4.44084 4.47530 4.48896 4.53706 4.83395 4.96714 5.08186 5.11501 5.18237 5.25192 5.28210 5.41975 5.45739 5.51080 5.55626 5.64503 5.65691 5.75020 5.78735 5.97104 5.99574 6.04266 6.15297 6.21289 6.30936 6.40595 6.57580 6.82012 6.93393 7.24112 7.27763 7.34684 7.42063 7.78130 7.88121 8.01740 8.46346 9.22607 9.81345 10.46024 11.29563 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.038411 B = 0.001844 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.773729 B =15184.598307 C =15441.442377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.129 4.129 3 C -0.108 4.108 4 H 0.102 0.898 5 C -0.158 4.158 6 C 0.263 3.737 7 F -0.205 7.205 8 F -0.201 7.201 9 C 0.519 3.481 10 O -0.537 6.537 11 N -0.727 5.727 12 C 0.124 3.876 13 C -0.091 4.091 14 C -0.143 4.143 15 C -0.147 4.147 16 C 0.199 3.801 17 N -0.595 5.595 18 C -0.250 4.250 19 H 0.064 0.936 20 C 0.007 3.993 21 N -0.907 5.907 22 Si 0.905 3.095 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.143 3.857 27 C -0.091 4.091 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.399 0.601 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.040 0.960 43 H 0.084 0.916 44 H 0.254 0.746 45 H 0.024 0.976 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.050 -10.148 24.808 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.167 4.167 3 C -0.129 4.129 4 H 0.120 0.880 5 C -0.196 4.196 6 C 0.209 3.791 7 F -0.187 7.187 8 F -0.182 7.182 9 C 0.305 3.695 10 O -0.413 6.413 11 N -0.379 5.379 12 C 0.001 3.999 13 C -0.129 4.129 14 C -0.144 4.144 15 C -0.166 4.166 16 C 0.074 3.926 17 N -0.318 5.318 18 C -0.380 4.380 19 H 0.082 0.918 20 C -0.192 4.192 21 N -0.551 5.551 22 Si 0.734 3.266 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.216 1.216 26 C 0.016 3.984 27 C -0.130 4.130 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.064 0.936 45 H 0.042 0.958 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.573 -9.309 24.713 26.533 hybrid contribution 0.427 -0.476 -0.903 1.106 sum 3.000 -9.785 23.810 25.917 Atomic orbital electron populations 1.21845 0.95031 1.02127 1.02277 1.21821 0.97404 0.93468 1.04002 1.21300 1.02120 0.96818 0.92711 0.87995 1.22551 1.04545 1.01741 0.90753 1.21936 0.98130 0.74008 0.85014 1.92998 1.91201 1.76026 1.58447 1.92930 1.90936 1.38077 1.96278 1.20310 0.80159 0.84062 0.85017 1.90741 1.37638 1.25542 1.87427 1.46078 1.49620 1.36143 1.06043 1.21453 0.99584 0.97705 0.81152 1.20906 0.99918 0.99284 0.92778 1.20224 0.98304 1.00296 0.95569 1.23163 0.97558 0.96609 0.99293 1.19675 0.91477 0.92839 0.88632 1.44024 1.14357 1.70076 1.03376 1.19143 1.35316 1.02317 0.81249 0.91815 1.25320 1.00653 0.95029 0.98189 1.69948 1.41662 1.10003 1.33489 0.86185 0.77340 0.77653 0.85395 1.20211 1.21533 1.21633 1.21016 0.91083 0.94579 0.91680 1.20794 0.93828 1.00070 0.98313 0.92241 0.92651 0.92128 0.89072 0.91239 0.87792 0.88119 0.87247 0.76698 0.91309 0.91217 0.91582 0.91502 0.89179 0.94281 0.89789 0.93580 0.95846 0.92552 0.92002 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.98 37.16 0.33 -0.86 16 2 C -0.13 -0.77 5.04 -26.73 -0.13 -0.91 16 3 C -0.11 -0.71 2.50 -91.77 -0.23 -0.94 16 4 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 5 C -0.16 -1.12 4.05 -26.73 -0.11 -1.23 16 6 C 0.26 1.57 5.25 37.16 0.20 1.77 16 7 F -0.21 -1.74 17.34 2.25 0.04 -1.71 16 8 F -0.20 -1.45 13.51 2.25 0.03 -1.42 16 9 C 0.52 5.41 6.05 -10.98 -0.07 5.34 16 10 O -0.54 -7.97 15.92 5.56 0.09 -7.88 16 11 N -0.73 -6.83 5.38 -60.30 -0.32 -7.16 16 12 C 0.12 1.52 5.66 -4.05 -0.02 1.49 16 13 C -0.09 -1.12 5.32 -27.88 -0.15 -1.27 16 14 C -0.14 -2.42 5.11 -100.99 -0.52 -2.93 16 15 C -0.15 -2.80 9.47 -35.78 -0.34 -3.14 16 16 C 0.20 4.77 5.13 -5.10 -0.03 4.75 16 17 N -0.59 -15.09 2.98 -173.57 -0.52 -15.61 16 18 C -0.25 -6.91 9.63 -15.06 -0.15 -7.05 16 19 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 20 C 0.01 0.19 5.23 -17.43 -0.09 0.10 16 21 N -0.91 -26.25 11.14 55.49 0.62 -25.63 16 22 Si 0.90 21.64 29.55 -169.99 -5.02 16.62 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C 0.14 3.04 6.59 -3.44 -0.02 3.02 16 27 C -0.09 -1.60 5.95 -28.09 -0.17 -1.76 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.53 7.22 -51.93 -0.37 0.15 16 30 H 0.06 0.48 5.95 -51.93 -0.31 0.17 16 31 H 0.09 0.48 5.78 -51.93 -0.30 0.18 16 32 H 0.07 0.35 7.52 -51.93 -0.39 -0.04 16 33 H 0.10 0.79 7.95 -51.93 -0.41 0.38 16 34 H 0.10 0.87 6.18 -51.93 -0.32 0.55 16 35 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.40 2.58 7.97 -40.82 -0.33 2.25 16 37 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.75 7.78 -51.93 -0.40 0.35 16 40 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 41 H 0.09 1.52 7.73 -52.48 -0.41 1.11 16 42 H 0.04 1.02 8.12 -51.93 -0.42 0.60 16 43 H 0.08 2.23 6.81 -51.93 -0.35 1.87 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.05 0.79 8.10 -51.92 -0.42 0.37 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -32.44 383.38 -8.58 -41.02 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.78 Total: -0.38 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.49 Total: -3.63 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.22 Total: -48.40 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.09 Total: -7.88 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.07 Total: -3.13 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.44 -8.58 -41.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160314929.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.040 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds