Wall clock time and date at job start Tue Mar 31 2020 15:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 H 1.08998 * 109.46996 * 175.06328 * 3 2 1 5 5 C 1.52997 * 109.47083 * 55.06405 * 3 2 1 6 6 C 1.53001 * 109.47284 * 65.00069 * 5 3 2 7 7 F 1.39900 * 109.47015 * 174.99832 * 6 5 3 8 8 F 1.39898 * 109.46678 * 294.99816 * 6 5 3 9 9 C 1.50699 * 109.47113 * 295.06205 * 3 2 1 10 10 O 1.21278 * 120.00011 * 120.04882 * 9 3 2 11 11 N 1.34783 * 120.00038 * 300.04921 * 9 3 2 12 12 C 1.46496 * 119.99827 * 175.86213 * 11 9 3 13 13 C 1.52997 * 109.46981 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.47225 * 179.97438 * 13 12 11 15 15 C 1.29455 * 117.69429 * 95.00072 * 14 13 12 16 16 C 1.50316 * 123.65445 * 180.86142 * 15 14 13 17 17 N 1.47012 * 109.16325 * 349.01966 * 16 15 14 18 18 C 1.36943 * 121.37424 * 222.96838 * 17 16 15 19 19 H 1.07996 * 119.99869 * 145.50200 * 18 17 16 20 20 C 1.38809 * 119.99898 * 325.51042 * 18 17 16 21 21 N 1.31612 * 120.00395 * 357.27819 * 20 18 17 22 22 Si 1.86807 * 119.99674 * 177.28538 * 20 18 17 23 23 H 1.48493 * 109.47215 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47175 * 119.99908 * 22 20 18 25 25 H 1.48503 * 109.46675 * 239.99683 * 22 20 18 26 26 C 1.47333 * 117.25267 * 42.94944 * 17 16 15 27 27 C 1.49967 * 117.69660 * 274.73700 * 14 13 12 28 28 H 1.08999 * 109.47418 * 174.67783 * 1 2 3 29 29 H 1.09000 * 109.47390 * 54.67433 * 1 2 3 30 30 H 1.09000 * 109.47038 * 294.67222 * 1 2 3 31 31 H 1.09002 * 109.47232 * 120.00156 * 2 1 3 32 32 H 1.08999 * 109.47053 * 239.99917 * 2 1 3 33 33 H 1.09007 * 109.47135 * 185.00095 * 5 3 2 34 34 H 1.08997 * 109.47194 * 304.99698 * 5 3 2 35 35 H 1.09004 * 109.47145 * 54.99741 * 6 5 3 36 36 H 0.97002 * 119.99932 * 355.86219 * 11 9 3 37 37 H 1.09000 * 109.47209 * 299.99637 * 12 11 9 38 38 H 1.08997 * 109.47547 * 60.00105 * 12 11 9 39 39 H 1.09002 * 109.47484 * 299.99937 * 13 12 11 40 40 H 1.09005 * 109.47601 * 59.99713 * 13 12 11 41 41 H 1.08008 * 118.17086 * 0.87838 * 15 14 13 42 42 H 1.08992 * 109.52745 * 108.92136 * 16 15 14 43 43 H 1.08999 * 109.52130 * 229.11994 * 16 15 14 44 44 H 0.96998 * 120.00067 * 180.02562 * 21 20 18 45 45 H 1.09007 * 109.77935 * 57.80757 * 26 17 16 46 46 H 1.08996 * 109.78073 * 178.62291 * 26 17 16 47 47 H 1.09002 * 109.32004 * 281.29227 * 27 14 13 48 48 H 1.09007 * 109.31059 * 40.72048 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4438 0.0884 5 6 1.4311 2.1987 1.1825 6 6 1.9374 1.5904 2.4920 7 9 1.4724 2.3513 3.5700 8 9 1.4662 0.2784 2.6095 9 6 1.6400 2.1167 -1.2870 10 8 0.9378 3.1052 -1.2610 11 7 2.0625 1.6211 -2.4671 12 6 1.6006 2.2213 -3.7211 13 6 2.2241 1.4762 -4.9030 14 6 1.7485 2.0931 -6.1931 15 6 2.5009 2.9911 -6.7439 16 6 2.1486 3.7053 -8.0188 17 7 0.9936 3.0415 -8.6404 18 6 0.9473 2.8056 -9.9886 19 1 0.4663 1.9148 -10.3647 20 6 1.5189 3.7113 -10.8717 21 7 2.0580 4.8227 -10.4174 22 14 1.5229 3.3527 -12.7050 23 1 0.8605 2.0475 -12.9555 24 1 0.7884 4.4265 -13.4210 25 1 2.9235 3.2988 -13.1957 26 6 -0.1120 2.6400 -7.7532 27 6 0.4398 1.6192 -6.7516 28 1 -0.3634 -1.0232 -0.0953 29 1 -0.3634 0.5942 -0.8384 30 1 -0.3633 0.4290 0.9339 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.7233 3.2476 1.1323 34 1 0.3446 2.1218 1.1423 35 1 3.0274 1.5865 2.4933 36 1 2.6724 0.8671 -2.4860 37 1 0.5145 2.1503 -3.7795 38 1 1.8986 3.2692 -3.7538 39 1 3.3102 1.5466 -4.8449 40 1 1.9258 0.4283 -4.8702 41 1 3.4339 3.2409 -6.2605 42 1 1.8969 4.7425 -7.7977 43 1 2.9980 3.6729 -8.7011 44 1 2.4571 5.4557 -11.0345 45 1 -0.4951 3.5123 -7.2234 46 1 -0.9094 2.1845 -8.3403 47 1 0.5865 0.6616 -7.2511 48 1 -0.2746 1.4926 -5.9380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160314929.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:56 Heat of formation + Delta-G solvation = -144.700621 kcal Electronic energy + Delta-G solvation = -28274.102270 eV Core-core repulsion = 23998.859373 eV Total energy + Delta-G solvation = -4275.242897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.90371 -47.92381 -41.12519 -39.47674 -36.99942 -36.51774 -35.10066 -33.14992 -31.66397 -31.49868 -30.32466 -28.06468 -26.79369 -24.69811 -24.34161 -24.03848 -22.76814 -22.44864 -20.58942 -19.46029 -18.73044 -18.38615 -17.78187 -17.46743 -17.05540 -16.93291 -16.81452 -16.57765 -15.89771 -15.76382 -15.53269 -15.26642 -15.09388 -14.67681 -14.64084 -14.53917 -14.24469 -13.95526 -13.89661 -13.78681 -13.39755 -13.36524 -13.21176 -12.97204 -12.84809 -12.77185 -12.66233 -12.35746 -12.19640 -12.15994 -11.90051 -11.86350 -11.80224 -11.69597 -11.58699 -11.21792 -10.74077 -10.69997 -10.08826 -9.49142 -8.60375 -7.90311 -5.44195 1.42040 1.45315 1.46004 1.57068 1.63340 2.15851 2.48239 2.99575 3.28209 3.39549 3.42373 3.63579 3.68772 3.85372 3.97026 3.98878 4.09515 4.11868 4.14562 4.30422 4.37254 4.43732 4.55669 4.59441 4.60963 4.69905 4.72685 4.86735 4.92478 4.94132 4.97646 4.99546 5.10562 5.15410 5.19007 5.24041 5.24582 5.39634 5.41402 5.45299 5.51223 5.61629 5.88360 6.29344 6.38428 6.57453 7.14479 7.27155 7.80279 8.40548 9.17814 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.038411 B = 0.001844 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.773729 B =15184.598307 C =15441.442377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.125 4.125 3 C -0.098 4.098 4 H 0.142 0.858 5 C -0.158 4.158 6 C 0.263 3.737 7 F -0.223 7.223 8 F -0.207 7.207 9 C 0.515 3.485 10 O -0.588 6.588 11 N -0.714 5.714 12 C 0.133 3.867 13 C -0.078 4.078 14 C -0.121 4.121 15 C -0.176 4.176 16 C 0.209 3.791 17 N -0.615 5.615 18 C -0.263 4.263 19 H 0.066 0.934 20 C -0.049 4.049 21 N -0.939 5.939 22 Si 0.973 3.027 23 H -0.264 1.264 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.135 3.865 27 C -0.087 4.087 28 H 0.066 0.934 29 H 0.031 0.969 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.154 0.846 36 H 0.418 0.582 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.002 0.998 43 H 0.048 0.952 44 H 0.251 0.749 45 H 0.015 0.985 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.256 -13.107 26.324 29.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.162 4.162 3 C -0.119 4.119 4 H 0.159 0.841 5 C -0.196 4.196 6 C 0.210 3.790 7 F -0.204 7.204 8 F -0.189 7.189 9 C 0.303 3.697 10 O -0.468 6.468 11 N -0.366 5.366 12 C 0.009 3.991 13 C -0.115 4.115 14 C -0.122 4.122 15 C -0.195 4.195 16 C 0.084 3.916 17 N -0.340 5.340 18 C -0.393 4.393 19 H 0.084 0.916 20 C -0.245 4.245 21 N -0.584 5.584 22 Si 0.800 3.200 23 H -0.188 1.188 24 H -0.218 1.218 25 H -0.215 1.215 26 C 0.010 3.990 27 C -0.125 4.125 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.171 0.829 36 H 0.256 0.744 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.131 0.869 42 H 0.020 0.980 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.033 0.967 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.787 -12.325 26.252 29.247 hybrid contribution -0.065 0.435 -1.336 1.406 sum 3.722 -11.890 24.917 27.858 Atomic orbital electron populations 1.21845 0.96791 1.01933 1.00818 1.21848 0.95751 0.93049 1.05563 1.21331 1.04321 0.96408 0.89852 0.84052 1.22500 1.03317 1.01708 0.92098 1.22248 1.00098 0.73138 0.83518 1.92965 1.91621 1.76567 1.59248 1.92913 1.91267 1.38478 1.96218 1.21024 0.79033 0.83369 0.86268 1.90728 1.39933 1.28018 1.88161 1.45876 1.49554 1.36337 1.04834 1.21127 0.98736 0.96764 0.82508 1.20799 1.01007 1.00034 0.89661 1.20591 0.96896 0.98121 0.96554 1.22855 0.99921 0.98678 0.98036 1.19303 0.89988 0.91937 0.90336 1.44313 1.15909 1.70263 1.03476 1.19477 1.34823 1.02370 0.82657 0.91603 1.26125 1.00760 0.95007 1.02575 1.70137 1.42666 1.10988 1.34641 0.85126 0.77149 0.77754 0.79952 1.18815 1.21774 1.21544 1.21194 0.90431 0.95331 0.92035 1.20744 0.94806 0.98760 0.98232 0.91544 0.94960 0.93016 0.87609 0.89484 0.88597 0.90455 0.82905 0.74445 0.92729 0.93482 0.89640 0.88829 0.86855 0.98017 0.93353 0.94020 0.96683 0.92381 0.91284 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.98 71.98 0.65 -1.53 16 2 C -0.12 -1.06 5.04 30.59 0.15 -0.90 16 3 C -0.10 -0.99 2.50 -11.54 -0.03 -1.02 16 4 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 5 C -0.16 -2.03 4.05 30.59 0.12 -1.91 16 6 C 0.26 2.49 5.25 71.98 0.38 2.87 16 7 F -0.22 -3.51 17.34 44.97 0.78 -2.73 16 8 F -0.21 -2.47 13.51 44.97 0.61 -1.86 16 9 C 0.52 9.79 6.05 87.66 0.53 10.32 16 10 O -0.59 -17.45 15.92 -3.02 -0.05 -17.50 16 11 N -0.71 -11.22 5.38 -463.07 -2.49 -13.71 16 12 C 0.13 2.95 5.66 86.38 0.49 3.44 16 13 C -0.08 -1.62 5.32 29.85 0.16 -1.46 16 14 C -0.12 -3.84 5.11 -15.14 -0.08 -3.92 16 15 C -0.18 -6.69 9.47 27.10 0.26 -6.43 16 16 C 0.21 10.55 5.13 85.42 0.44 10.99 16 17 N -0.62 -32.04 2.98 -703.04 -2.09 -34.14 16 18 C -0.26 -14.79 9.63 84.03 0.81 -13.98 16 19 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 20 C -0.05 -2.80 5.23 84.86 0.44 -2.36 16 21 N -0.94 -56.62 11.14 21.65 0.24 -56.38 16 22 Si 0.97 45.27 29.55 68.60 2.03 47.29 16 23 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 26 C 0.14 5.78 6.59 86.32 0.57 6.34 16 27 C -0.09 -2.86 5.95 29.72 0.18 -2.69 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.03 0.59 7.22 -2.39 -0.02 0.57 16 30 H 0.05 0.80 5.95 -2.39 -0.01 0.78 16 31 H 0.11 0.68 5.78 -2.39 -0.01 0.67 16 32 H 0.09 0.47 7.52 -2.39 -0.02 0.45 16 33 H 0.10 1.40 7.95 -2.38 -0.02 1.38 16 34 H 0.08 1.35 6.18 -2.39 -0.01 1.34 16 35 H 0.15 0.19 8.14 -2.38 -0.02 0.17 16 36 H 0.42 3.44 7.97 -92.71 -0.74 2.70 16 37 H 0.05 1.39 8.11 -2.39 -0.02 1.37 16 38 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.55 7.78 -2.39 -0.02 1.54 16 40 H 0.09 1.57 8.11 -2.38 -0.02 1.55 16 41 H 0.11 3.73 7.73 -2.91 -0.02 3.70 16 42 H 0.00 0.12 8.12 -2.39 -0.02 0.10 16 43 H 0.05 2.71 6.81 -2.39 -0.02 2.70 16 44 H 0.25 14.56 8.31 -92.71 -0.77 13.78 16 45 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 46 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 47 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.08 2.28 8.10 -2.38 -0.02 2.26 16 Total: -1.00 -75.60 383.38 4.31 -71.28 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.22 Total: 9.98 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 5.07 Total: -2.24 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -4.34 Total: -104.22 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.05 Total: -17.50 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 1.39 Total: -4.59 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -75.60 4.31 -71.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160314929.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.419 kcal (2) G-P(sol) polarization free energy of solvation -75.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds