Wall clock time and date at job start Tue Mar 31 2020 15:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 H 1.08993 * 109.47273 * 305.00254 * 3 2 1 5 5 C 1.50694 * 109.46901 * 184.99758 * 3 2 1 6 6 H 1.08007 * 120.00475 * 239.99630 * 5 3 2 7 7 C 1.37879 * 119.99903 * 60.00648 * 5 3 2 8 8 N 1.31520 * 119.99912 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00101 * 359.97438 * 7 5 3 10 10 H 1.48493 * 109.47235 * 270.00229 * 9 7 5 11 11 H 1.48503 * 109.46923 * 30.00458 * 9 7 5 12 12 H 1.48497 * 109.47007 * 150.00136 * 9 7 5 13 13 N 1.46509 * 109.47029 * 65.00221 * 3 2 1 14 14 C 1.39114 * 119.99864 * 275.00170 * 13 3 2 15 15 N 1.31942 * 119.67993 * 359.97438 * 14 13 3 16 16 C 1.33049 * 121.58138 * 180.02562 * 15 14 13 17 17 C 1.43202 * 119.62578 * 180.02562 * 16 15 14 18 18 N 5.88200 * 36.10623 * 332.42732 * 2 1 3 19 19 C 1.39380 * 120.75210 * 359.97438 * 16 15 14 20 20 C 1.38509 * 119.29263 * 0.02562 * 19 16 15 21 21 C 1.39011 * 118.53829 * 359.74366 * 20 19 16 22 22 N 1.39719 * 120.40317 * 180.28121 * 21 20 19 23 23 C 1.34778 * 120.00076 * 325.57854 * 22 21 20 24 24 O 1.21291 * 119.99962 * 4.35754 * 23 22 21 25 25 C 1.50703 * 120.00139 * 184.36202 * 23 22 21 26 26 C 1.53003 * 109.47153 * 179.97438 * 25 23 22 27 27 C 1.52996 * 109.47075 * 299.99710 * 25 23 22 28 28 C 1.53002 * 109.47236 * 59.99780 * 25 23 22 29 29 H 1.09001 * 109.46669 * 59.99401 * 1 2 3 30 30 H 1.08996 * 109.46958 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46768 * 300.00178 * 1 2 3 32 32 H 1.08997 * 109.46761 * 240.00379 * 2 1 3 33 33 H 1.08998 * 109.47204 * 120.00077 * 2 1 3 34 34 H 0.96998 * 119.99592 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99812 * 94.99425 * 13 3 2 36 36 H 1.08005 * 120.35210 * 179.97438 * 19 16 15 37 37 H 1.07995 * 120.73003 * 180.02562 * 20 19 16 38 38 H 0.97004 * 120.00376 * 145.58120 * 22 21 20 39 39 H 1.08995 * 109.47097 * 59.99363 * 26 25 23 40 40 H 1.08995 * 109.47142 * 179.97438 * 26 25 23 41 41 H 1.09004 * 109.46891 * 299.99673 * 26 25 23 42 42 H 1.09000 * 109.47022 * 59.99828 * 27 25 23 43 43 H 1.08995 * 109.47406 * 180.02562 * 27 25 23 44 44 H 1.09004 * 109.47245 * 300.00068 * 27 25 23 45 45 H 1.08992 * 109.47145 * 60.00259 * 28 25 23 46 46 H 1.08995 * 109.46917 * 180.02562 * 28 25 23 47 47 H 1.09000 * 109.46918 * 300.00206 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8784 -1.2280 8 7 5.4540 0.8803 -1.3362 9 14 3.0964 0.1090 -2.5701 10 1 2.8755 -1.3271 -2.2636 11 1 1.7877 0.8076 -2.6387 12 1 3.7937 0.2350 -3.8751 13 7 1.6525 2.0975 1.2519 14 6 0.3960 2.6826 1.3708 15 7 -0.4415 2.6444 0.3520 16 6 -1.6519 3.1921 0.4241 17 6 -2.5274 3.1258 -0.7072 18 7 -3.2222 3.0725 -1.6044 19 6 -2.0778 3.8288 1.5885 20 6 -1.2256 3.8886 2.6787 21 6 0.0304 3.3024 2.5728 22 7 0.9189 3.3346 3.6506 23 6 0.9456 4.4042 4.4702 24 8 0.1453 5.3032 4.3203 25 6 1.9698 4.4832 5.5729 26 6 1.7837 5.7885 6.3493 27 6 1.7912 3.2956 6.5208 28 6 3.3746 4.4461 4.9678 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.8770 0.4826 -2.1132 35 1 2.2720 2.1230 1.9979 36 1 -3.0616 4.2716 1.6398 37 1 -1.5319 4.3758 3.5925 38 1 1.5167 2.5872 3.8090 39 1 0.7829 5.8154 6.7802 40 1 2.5242 5.8454 7.1470 41 1 1.9113 6.6343 5.6737 42 1 1.9240 2.3659 5.9675 43 1 2.5317 3.3529 7.3186 44 1 0.7904 3.3220 6.9519 45 1 3.5018 5.2922 4.2926 46 1 4.1153 4.5028 5.7654 47 1 3.5074 3.5164 4.4145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161052404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:15 Heat of formation + Delta-G solvation = 39.115106 kcal Electronic energy + Delta-G solvation = -28988.973384 eV Core-core repulsion = 25172.390522 eV Total energy + Delta-G solvation = -3816.582862 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15639 -39.74531 -36.97026 -36.26472 -35.80289 -35.13613 -32.97820 -31.78137 -31.29219 -29.46474 -27.63262 -27.41100 -27.18693 -25.14805 -23.20773 -22.57264 -22.43167 -20.28618 -19.96112 -19.17780 -17.90215 -17.03458 -16.90319 -16.36228 -15.61873 -15.40007 -15.19696 -14.89624 -14.70244 -14.16078 -13.93633 -13.82037 -13.67811 -13.49175 -13.22633 -12.92316 -12.67702 -12.63469 -12.59891 -12.43515 -12.38049 -12.15735 -12.06585 -11.96582 -11.83211 -11.24849 -11.22039 -11.17655 -11.05262 -10.80131 -10.59716 -10.19631 -10.08538 -9.76528 -9.58260 -9.35954 -9.17686 -8.84322 -8.64622 -7.11928 -6.27294 -4.30272 0.73424 1.59449 2.39061 2.63660 2.84156 3.09019 3.19364 3.32647 3.36660 3.55412 3.95244 4.13223 4.26320 4.27172 4.46781 4.57591 4.80650 4.89676 5.06941 5.16503 5.25864 5.27631 5.34463 5.39616 5.46489 5.55611 5.60642 5.64926 5.82404 5.86620 5.90290 5.94256 5.97575 5.98615 6.03946 6.10914 6.25471 6.52474 6.62878 6.66290 6.81020 6.86110 7.15876 7.17718 7.38830 7.49665 7.56928 7.75022 7.97930 8.31958 8.44840 8.72172 9.33036 10.84614 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009521 B = 0.004779 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.189936 B = 5858.056485 C = 8174.991004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.138 4.138 3 C 0.251 3.749 4 H 0.054 0.946 5 C -0.537 4.537 6 H 0.079 0.921 7 C 0.081 3.919 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.259 1.259 12 H -0.295 1.295 13 N -0.687 5.687 14 C 0.413 3.587 15 N -0.489 5.489 16 C 0.218 3.782 17 C 0.279 3.721 18 N -0.407 5.407 19 C -0.178 4.178 20 C -0.039 4.039 21 C 0.040 3.960 22 N -0.658 5.658 23 C 0.525 3.475 24 O -0.522 6.522 25 C -0.084 4.084 26 C -0.127 4.127 27 C -0.143 4.143 28 C -0.145 4.145 29 H 0.055 0.945 30 H 0.030 0.970 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.268 0.732 35 H 0.400 0.600 36 H 0.138 0.862 37 H 0.153 0.847 38 H 0.409 0.591 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.899 4.496 16.741 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 C 0.147 3.853 4 H 0.072 0.928 5 C -0.575 4.575 6 H 0.097 0.903 7 C -0.123 4.123 8 N -0.527 5.527 9 Si 0.711 3.289 10 H -0.203 1.203 11 H -0.183 1.183 12 H -0.222 1.222 13 N -0.315 5.315 14 C 0.169 3.831 15 N -0.209 5.209 16 C 0.079 3.921 17 C -0.038 4.038 18 N -0.084 5.084 19 C -0.205 4.205 20 C -0.067 4.067 21 C -0.063 4.063 22 N -0.304 5.304 23 C 0.312 3.688 24 O -0.396 6.396 25 C -0.087 4.087 26 C -0.185 4.185 27 C -0.201 4.201 28 C -0.203 4.203 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.236 0.764 36 H 0.156 0.844 37 H 0.171 0.829 38 H 0.246 0.754 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.964 4.508 14.210 17.395 hybrid contribution 0.324 -0.558 0.544 0.844 sum -8.639 3.950 14.754 17.548 Atomic orbital electron populations 1.21872 0.97086 0.98942 1.01927 1.22298 0.94285 1.00056 1.01042 1.19190 0.95482 0.88334 0.82299 0.92802 1.21003 0.88592 1.39968 1.07909 0.90338 1.24801 0.94825 0.95063 0.97607 1.69861 1.08705 1.44350 1.29817 0.86928 0.81061 0.79948 0.80959 1.20271 1.18306 1.22207 1.45077 1.10406 1.57688 1.18302 1.18130 0.87569 0.90941 0.86429 1.67295 1.02648 1.21756 1.29215 1.16010 0.89561 0.97884 0.88635 1.25106 0.92810 0.93584 0.92280 1.81192 1.10526 1.07811 1.08891 1.21430 1.01794 1.04633 0.92669 1.21272 0.89819 0.96156 0.99414 1.18214 0.91964 1.07941 0.88169 1.43226 1.39094 1.20840 1.27283 1.20786 0.84880 0.80721 0.82389 1.90674 1.40049 1.38016 1.70905 1.20830 0.94931 0.98832 0.94103 1.21671 1.02235 0.95043 0.99550 1.21907 1.02877 0.96152 0.99142 1.21919 0.93625 1.03227 1.01486 0.92613 0.95053 0.93342 0.92768 0.92449 0.92241 0.76362 0.84415 0.82927 0.75389 0.91911 0.91850 0.91754 0.91936 0.90993 0.91921 0.91650 0.91020 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.45 37.16 0.31 -2.25 16 2 C -0.14 -2.82 5.11 -26.73 -0.14 -2.95 16 3 C 0.25 5.40 1.84 -69.08 -0.13 5.27 16 4 H 0.05 1.29 6.60 -51.93 -0.34 0.95 16 5 C -0.54 -13.58 9.31 -34.44 -0.32 -13.90 16 6 H 0.08 2.09 7.98 -52.48 -0.42 1.67 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.50 13.96 55.43 0.77 -24.73 16 9 Si 0.88 21.08 24.41 -169.99 -4.15 16.93 16 10 H -0.28 -6.41 6.83 56.52 0.39 -6.03 16 11 H -0.26 -6.12 6.53 56.52 0.37 -5.75 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 13 N -0.69 -11.93 5.13 -54.87 -0.28 -12.21 16 14 C 0.41 6.67 6.06 -154.94 -0.94 5.73 16 15 N -0.49 -8.44 6.32 -10.12 -0.06 -8.50 16 16 C 0.22 3.28 6.58 -84.99 -0.56 2.72 16 17 C 0.28 4.40 15.52 -22.47 -0.35 4.05 16 18 N -0.41 -6.92 18.54 41.84 0.78 -6.14 16 19 C -0.18 -2.20 9.77 -39.06 -0.38 -2.58 16 20 C -0.04 -0.50 8.79 -39.20 -0.34 -0.85 16 21 C 0.04 0.54 6.35 -83.28 -0.53 0.01 16 22 N -0.66 -7.30 4.79 -9.58 -0.05 -7.35 16 23 C 0.52 5.93 6.34 -10.98 -0.07 5.86 16 24 O -0.52 -7.37 13.42 5.55 0.07 -7.30 16 25 C -0.08 -0.70 0.87 -155.66 -0.14 -0.83 16 26 C -0.13 -1.04 7.76 37.16 0.29 -0.75 16 27 C -0.14 -0.91 8.37 37.16 0.31 -0.60 16 28 C -0.15 -1.18 8.37 37.16 0.31 -0.87 16 29 H 0.05 1.08 7.67 -51.93 -0.40 0.69 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.83 5.60 -51.93 -0.29 0.54 16 32 H 0.05 1.20 3.21 -51.93 -0.17 1.03 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.40 6.13 7.12 -40.82 -0.29 5.84 16 36 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 37 H 0.15 1.86 6.26 -52.49 -0.33 1.53 16 38 H 0.41 3.74 6.56 -40.82 -0.27 3.47 16 39 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 42 H 0.06 0.36 7.47 -51.93 -0.39 -0.03 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 LS Contribution 377.69 15.07 5.69 5.69 Total: -1.00 -30.43 377.69 -6.69 -37.11 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.70 Total: 6.35 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.77 Total: 0.14 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 1.16 Total: -58.93 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: 0.07 Total: -7.30 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.15 Total: 16.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.43 -6.69 -37.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.229 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds