Wall clock time and date at job start Tue Mar 31 2020 15:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 H 1.08993 * 109.47273 * 305.00254 * 3 2 1 5 5 C 1.50694 * 109.46901 * 184.99758 * 3 2 1 6 6 H 1.08007 * 120.00475 * 239.99630 * 5 3 2 7 7 C 1.37879 * 119.99903 * 60.00648 * 5 3 2 8 8 N 1.31520 * 119.99912 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00101 * 359.97438 * 7 5 3 10 10 H 1.48493 * 109.47235 * 270.00229 * 9 7 5 11 11 H 1.48503 * 109.46923 * 30.00458 * 9 7 5 12 12 H 1.48497 * 109.47007 * 150.00136 * 9 7 5 13 13 N 1.46509 * 109.47029 * 65.00221 * 3 2 1 14 14 C 1.39114 * 119.99864 * 275.00170 * 13 3 2 15 15 N 1.31942 * 119.67993 * 359.97438 * 14 13 3 16 16 C 1.33049 * 121.58138 * 180.02562 * 15 14 13 17 17 C 1.43202 * 119.62578 * 180.02562 * 16 15 14 18 18 N 5.88200 * 36.10623 * 332.42732 * 2 1 3 19 19 C 1.39380 * 120.75210 * 359.97438 * 16 15 14 20 20 C 1.38509 * 119.29263 * 0.02562 * 19 16 15 21 21 C 1.39011 * 118.53829 * 359.74366 * 20 19 16 22 22 N 1.39719 * 120.40317 * 180.28121 * 21 20 19 23 23 C 1.34778 * 120.00076 * 325.57854 * 22 21 20 24 24 O 1.21291 * 119.99962 * 4.35754 * 23 22 21 25 25 C 1.50703 * 120.00139 * 184.36202 * 23 22 21 26 26 C 1.53003 * 109.47153 * 179.97438 * 25 23 22 27 27 C 1.52996 * 109.47075 * 299.99710 * 25 23 22 28 28 C 1.53002 * 109.47236 * 59.99780 * 25 23 22 29 29 H 1.09001 * 109.46669 * 59.99401 * 1 2 3 30 30 H 1.08996 * 109.46958 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46768 * 300.00178 * 1 2 3 32 32 H 1.08997 * 109.46761 * 240.00379 * 2 1 3 33 33 H 1.08998 * 109.47204 * 120.00077 * 2 1 3 34 34 H 0.96998 * 119.99592 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99812 * 94.99425 * 13 3 2 36 36 H 1.08005 * 120.35210 * 179.97438 * 19 16 15 37 37 H 1.07995 * 120.73003 * 180.02562 * 20 19 16 38 38 H 0.97004 * 120.00376 * 145.58120 * 22 21 20 39 39 H 1.08995 * 109.47097 * 59.99363 * 26 25 23 40 40 H 1.08995 * 109.47142 * 179.97438 * 26 25 23 41 41 H 1.09004 * 109.46891 * 299.99673 * 26 25 23 42 42 H 1.09000 * 109.47022 * 59.99828 * 27 25 23 43 43 H 1.08995 * 109.47406 * 180.02562 * 27 25 23 44 44 H 1.09004 * 109.47245 * 300.00068 * 27 25 23 45 45 H 1.08992 * 109.47145 * 60.00259 * 28 25 23 46 46 H 1.08995 * 109.46917 * 180.02562 * 28 25 23 47 47 H 1.09000 * 109.46918 * 300.00206 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8784 -1.2280 8 7 5.4540 0.8803 -1.3362 9 14 3.0964 0.1090 -2.5701 10 1 2.8755 -1.3271 -2.2636 11 1 1.7877 0.8076 -2.6387 12 1 3.7937 0.2350 -3.8751 13 7 1.6525 2.0975 1.2519 14 6 0.3960 2.6826 1.3708 15 7 -0.4415 2.6444 0.3520 16 6 -1.6519 3.1921 0.4241 17 6 -2.5274 3.1258 -0.7072 18 7 -3.2222 3.0725 -1.6044 19 6 -2.0778 3.8288 1.5885 20 6 -1.2256 3.8886 2.6787 21 6 0.0304 3.3024 2.5728 22 7 0.9189 3.3346 3.6506 23 6 0.9456 4.4042 4.4702 24 8 0.1453 5.3032 4.3203 25 6 1.9698 4.4832 5.5729 26 6 1.7837 5.7885 6.3493 27 6 1.7912 3.2956 6.5208 28 6 3.3746 4.4461 4.9678 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.8770 0.4826 -2.1132 35 1 2.2720 2.1230 1.9979 36 1 -3.0616 4.2716 1.6398 37 1 -1.5319 4.3758 3.5925 38 1 1.5167 2.5872 3.8090 39 1 0.7829 5.8154 6.7802 40 1 2.5242 5.8454 7.1470 41 1 1.9113 6.6343 5.6737 42 1 1.9240 2.3659 5.9675 43 1 2.5317 3.3529 7.3186 44 1 0.7904 3.3220 6.9519 45 1 3.5018 5.2922 4.2926 46 1 4.1153 4.5028 5.7654 47 1 3.5074 3.5164 4.4145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161052404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:15 Heat of formation + Delta-G solvation = 20.622682 kcal Electronic energy + Delta-G solvation = -28989.775276 eV Core-core repulsion = 25172.390522 eV Total energy + Delta-G solvation = -3817.384754 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.20885 -40.79295 -38.36138 -37.51680 -36.66522 -36.20707 -34.69199 -33.42315 -32.44808 -30.76778 -28.87321 -28.19021 -28.04453 -26.21290 -24.72427 -23.88792 -23.49359 -21.81061 -21.12099 -20.22449 -19.06449 -18.58247 -17.95365 -17.60185 -17.11244 -16.67218 -16.33889 -15.90017 -15.79422 -15.51898 -15.17851 -14.90638 -14.76542 -14.66750 -14.50007 -14.29468 -13.96560 -13.88238 -13.68682 -13.61984 -13.44492 -13.22741 -13.03779 -12.91867 -12.84194 -12.73157 -12.57561 -12.38030 -11.91089 -11.89334 -11.85529 -11.77578 -11.35400 -11.33871 -11.07810 -10.94519 -10.74123 -10.42010 -9.90492 -8.38006 -8.34913 -6.38954 -0.40682 0.47215 1.27903 1.37256 1.40102 1.44392 1.45637 1.83046 1.99918 2.27257 2.31475 2.70261 2.96199 3.03034 3.49209 3.69118 3.83547 3.94259 4.02037 4.13438 4.24249 4.32525 4.36313 4.40224 4.55982 4.75207 4.76320 4.83358 4.87967 4.90087 4.92856 4.98808 5.00338 5.06427 5.11755 5.19237 5.21118 5.28784 5.29469 5.37534 5.40485 5.51764 5.54531 5.64575 5.96952 6.25695 6.28585 6.32279 6.58362 6.64946 7.05515 7.17160 7.33106 8.79721 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009521 B = 0.004779 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.189936 B = 5858.056485 C = 8174.991004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.136 4.136 3 C 0.264 3.736 4 H 0.029 0.971 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.033 3.967 8 N -0.935 5.935 9 Si 0.931 3.069 10 H -0.263 1.263 11 H -0.258 1.258 12 H -0.301 1.301 13 N -0.692 5.692 14 C 0.397 3.603 15 N -0.517 5.517 16 C 0.197 3.803 17 C 0.293 3.707 18 N -0.435 5.435 19 C -0.145 4.145 20 C -0.041 4.041 21 C 0.055 3.945 22 N -0.652 5.652 23 C 0.523 3.477 24 O -0.550 6.550 25 C -0.077 4.077 26 C -0.126 4.126 27 C -0.141 4.141 28 C -0.146 4.146 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.268 0.732 35 H 0.409 0.591 36 H 0.171 0.829 37 H 0.165 0.835 38 H 0.420 0.580 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.091 0.909 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.366 4.364 18.959 21.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.174 4.174 3 C 0.158 3.842 4 H 0.047 0.953 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.167 4.167 8 N -0.574 5.574 9 Si 0.760 3.240 10 H -0.189 1.189 11 H -0.183 1.183 12 H -0.229 1.229 13 N -0.324 5.324 14 C 0.155 3.845 15 N -0.237 5.237 16 C 0.059 3.941 17 C -0.023 4.023 18 N -0.112 5.112 19 C -0.172 4.172 20 C -0.069 4.069 21 C -0.048 4.048 22 N -0.299 5.299 23 C 0.312 3.688 24 O -0.427 6.427 25 C -0.080 4.080 26 C -0.184 4.184 27 C -0.199 4.199 28 C -0.203 4.203 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.246 0.754 36 H 0.189 0.811 37 H 0.183 0.817 38 H 0.258 0.742 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.110 0.890 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.473 4.381 16.461 19.997 hybrid contribution 0.749 -0.374 -0.003 0.837 sum -9.724 4.007 16.459 19.532 Atomic orbital electron populations 1.21740 0.95219 1.00001 1.01654 1.22202 0.95877 0.98758 1.00599 1.18708 0.92616 0.89317 0.83534 0.95304 1.21310 0.90689 1.37881 1.06628 0.92521 1.25447 0.95499 0.96027 0.99688 1.69972 1.10220 1.46457 1.30749 0.86124 0.79536 0.79940 0.78449 1.18906 1.18264 1.22890 1.44641 1.11538 1.58999 1.17210 1.18125 0.87037 0.92133 0.87237 1.67130 1.03677 1.22669 1.30247 1.16074 0.89132 0.99526 0.89333 1.25217 0.92327 0.92727 0.92027 1.81201 1.11550 1.08954 1.09534 1.21761 1.02704 1.01719 0.90992 1.21477 0.89429 0.95971 0.99977 1.18275 0.92484 1.06174 0.87851 1.43282 1.38772 1.21385 1.26468 1.21416 0.84915 0.79956 0.82529 1.90656 1.41375 1.38931 1.71713 1.20858 0.93799 0.99993 0.93375 1.21682 1.02757 0.94222 0.99734 1.21929 1.03553 0.95262 0.99133 1.21948 0.94026 1.02479 1.01886 0.94194 0.93225 0.92328 0.94490 0.91470 0.92326 0.75403 0.81123 0.81730 0.74167 0.92308 0.89608 0.93466 0.91242 0.89236 0.91844 0.93366 0.89027 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 8.45 71.98 0.61 -3.88 16 2 C -0.14 -5.39 5.11 30.60 0.16 -5.23 16 3 C 0.26 11.33 1.84 44.24 0.08 11.41 16 4 H 0.03 1.40 6.60 -2.39 -0.02 1.39 16 5 C -0.53 -27.06 9.31 25.60 0.24 -26.82 16 6 H 0.06 3.09 7.98 -2.91 -0.02 3.07 16 7 C 0.03 1.80 5.45 84.65 0.46 2.26 16 8 N -0.93 -54.78 13.96 21.45 0.30 -54.48 16 9 Si 0.93 44.05 24.41 68.60 1.67 45.72 16 10 H -0.26 -11.78 6.83 99.48 0.68 -11.10 16 11 H -0.26 -12.06 6.53 99.48 0.65 -11.42 16 12 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 13 N -0.69 -23.65 5.13 -327.51 -1.68 -25.33 16 14 C 0.40 12.36 6.06 133.40 0.81 13.17 16 15 N -0.52 -17.33 6.32 -185.94 -1.18 -18.51 16 16 C 0.20 5.59 6.58 40.48 0.27 5.86 16 17 C 0.29 8.90 15.52 88.33 1.37 10.28 16 18 N -0.44 -14.44 18.54 19.00 0.35 -14.09 16 19 C -0.14 -3.17 9.77 22.61 0.22 -2.95 16 20 C -0.04 -0.94 8.79 22.52 0.20 -0.74 16 21 C 0.06 1.40 6.35 38.52 0.24 1.64 16 22 N -0.65 -13.25 4.79 -302.62 -1.45 -14.70 16 23 C 0.52 10.89 6.34 87.66 0.56 11.44 16 24 O -0.55 -14.66 13.42 -3.06 -0.04 -14.70 16 25 C -0.08 -1.12 0.87 -52.93 -0.05 -1.17 16 26 C -0.13 -1.82 7.76 71.98 0.56 -1.26 16 27 C -0.14 -1.38 8.37 71.98 0.60 -0.78 16 28 C -0.15 -2.11 8.37 71.98 0.60 -1.51 16 29 H 0.04 1.51 7.67 -2.39 -0.02 1.49 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.91 5.60 -2.39 -0.01 1.89 16 32 H 0.04 1.59 3.21 -2.39 -0.01 1.59 16 33 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.41 12.25 7.12 -92.71 -0.66 11.59 16 36 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.17 3.51 6.26 -2.91 -0.02 3.49 16 38 H 0.42 6.84 6.56 -92.71 -0.61 6.23 16 39 H 0.06 0.89 8.10 -2.39 -0.02 0.88 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.05 0.84 8.10 -2.38 -0.02 0.82 16 42 H 0.07 0.59 7.47 -2.39 -0.02 0.58 16 43 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.06 0.94 7.67 -2.39 -0.02 0.92 16 Total: -1.00 -66.71 377.69 4.57 -62.13 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -0.33 Total: 22.23 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 6.93 Total: 11.73 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -3.65 Total: -127.11 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.04 Total: -14.70 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.67 Total: 45.72 kcal Total: -66.71 4.57 -62.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.757 kcal (2) G-P(sol) polarization free energy of solvation -66.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds