Wall clock time and date at job start Tue Mar 31 2020 15:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 120.00063 * 2 1 4 4 N 1.46500 * 109.47210 * 125.00211 * 3 2 1 5 5 C 1.34776 * 120.00232 * 180.02562 * 4 3 2 6 6 O 1.21606 * 120.00117 * 359.97438 * 5 4 3 7 7 C 1.47428 * 120.00068 * 180.02562 * 5 4 3 8 8 C 1.39973 * 120.61088 * 354.59099 * 7 5 4 9 9 C 1.38334 * 118.37182 * 180.02562 * 8 7 5 10 10 C 1.38367 * 119.50554 * 359.97438 * 9 8 7 11 11 N 1.31848 * 121.22007 * 0.02562 * 10 9 8 12 12 C 1.32429 * 121.77539 * 359.69823 * 11 10 9 13 13 N 1.38266 * 119.82754 * 180.31313 * 12 11 10 14 14 C 1.46955 * 110.99674 * 68.79691 * 13 12 11 15 15 C 1.53060 * 109.36381 * 176.81135 * 14 13 12 16 16 N 1.46952 * 109.36314 * 58.39430 * 15 14 13 17 17 C 1.46900 * 111.00211 * 176.81211 * 16 15 14 18 18 C 1.50705 * 109.46750 * 59.36542 * 17 16 15 19 19 H 1.07997 * 120.00254 * 355.20000 * 18 17 16 20 20 C 1.37878 * 119.99720 * 175.20696 * 18 17 16 21 21 N 1.31513 * 120.00158 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99560 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46981 * 89.99758 * 22 20 18 24 24 H 1.48505 * 109.47088 * 209.99347 * 22 20 18 25 25 H 1.48497 * 109.47456 * 329.99702 * 22 20 18 26 26 C 1.46954 * 110.88381 * 300.68426 * 16 15 14 27 27 C 1.46953 * 110.99997 * 304.99533 * 13 12 11 28 28 H 1.07999 * 120.00200 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99783 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99783 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47625 * 4.99951 * 3 2 1 32 32 H 1.09006 * 109.47392 * 244.99961 * 3 2 1 33 33 H 0.97002 * 119.99899 * 359.97438 * 4 3 2 34 34 H 1.08006 * 120.81477 * 359.97438 * 8 7 5 35 35 H 1.07998 * 120.24447 * 180.02562 * 9 8 7 36 36 H 1.08002 * 119.39124 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.48714 * 296.76984 * 14 13 12 38 38 H 1.08997 * 109.49286 * 56.84480 * 14 13 12 39 39 H 1.09001 * 109.48396 * 298.43547 * 15 14 13 40 40 H 1.08995 * 109.49012 * 178.36889 * 15 14 13 41 41 H 1.08991 * 109.47628 * 179.36421 * 17 16 15 42 42 H 1.09003 * 109.46964 * 299.37344 * 17 16 15 43 43 H 0.96999 * 119.99447 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.48697 * 299.35221 * 26 16 15 45 45 H 1.09005 * 109.48849 * 179.28813 * 26 16 15 46 46 H 1.09002 * 109.48968 * 303.15274 * 27 13 12 47 47 H 1.08991 * 109.48947 * 63.20078 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7784 2.4089 1.3334 6 8 3.7144 3.3584 0.5764 7 6 4.7150 2.4356 2.4717 8 6 4.7210 1.4007 3.4142 9 6 5.6188 1.4730 4.4641 10 6 6.4777 2.5542 4.5531 11 7 6.4567 3.5194 3.6551 12 6 5.6217 3.4977 2.6274 13 7 5.6386 4.5283 1.7058 14 6 6.8780 4.5084 0.9163 15 6 6.8230 5.6122 -0.1426 16 7 6.6433 6.9126 0.5180 17 6 6.6613 8.0075 -0.4612 18 6 5.5545 7.8033 -1.4634 19 1 4.9524 6.9074 -1.4280 20 6 5.3106 8.7602 -2.4256 21 7 6.0434 9.8513 -2.4685 22 14 3.9391 8.5067 -3.6682 23 1 2.6761 9.0775 -3.1349 24 1 4.2915 9.1873 -4.9402 25 1 3.7592 7.0539 -3.9175 26 6 5.4040 6.9323 1.3075 27 6 5.4591 5.8286 2.3663 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6214 1.4026 -0.9314 33 1 3.0446 0.5746 1.7355 34 1 4.0408 0.5666 3.3243 35 1 5.6497 0.6910 5.2082 36 1 7.1782 2.6086 5.3733 37 1 7.7307 4.6776 1.5739 38 1 6.9820 3.5400 0.4270 39 1 5.9863 5.4281 -0.8165 40 1 7.7533 5.6181 -0.7104 41 1 6.5151 8.9573 0.0530 42 1 7.6214 8.0176 -0.9773 43 1 5.8715 10.5247 -3.1452 44 1 4.5513 6.7633 0.6499 45 1 5.2999 7.9008 1.7967 46 1 4.5287 5.8227 2.9342 47 1 6.2954 6.0125 3.0406 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:30 Heat of formation + Delta-G solvation = 59.242199 kcal Electronic energy + Delta-G solvation = -28650.292572 eV Core-core repulsion = 24834.582486 eV Total energy + Delta-G solvation = -3815.710086 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.97010 -39.09018 -38.20187 -35.90017 -35.08572 -33.36649 -32.38777 -32.20288 -30.54690 -30.24181 -27.56968 -26.50479 -24.93298 -24.34300 -22.84365 -22.62126 -21.33850 -20.86571 -20.34011 -19.01027 -17.99897 -17.10328 -16.96373 -16.18356 -15.89193 -15.52358 -15.12382 -15.02139 -14.74451 -14.48498 -14.14106 -14.03504 -13.90852 -13.59553 -13.30294 -13.20073 -13.07943 -12.67547 -12.58642 -12.50688 -11.80011 -11.75217 -11.48385 -11.03290 -10.76831 -10.69738 -10.45923 -10.36475 -10.17768 -10.08297 -9.98476 -9.92356 -9.71910 -9.61185 -9.39557 -9.13707 -8.99326 -8.32054 -8.10290 -7.03592 -5.91500 -3.99409 0.54222 0.96061 1.73370 2.93833 3.17749 3.36765 3.42582 3.48965 3.70853 3.78692 4.33959 4.41847 4.52030 4.52353 4.61652 4.74103 4.85717 4.99299 5.17695 5.25144 5.31601 5.38868 5.49162 5.52955 5.61086 5.69548 5.72433 5.78117 5.89298 6.06002 6.11579 6.16024 6.18150 6.22086 6.25812 6.39739 6.41023 6.71933 6.94062 7.05776 7.23316 7.39642 7.43341 7.55910 7.64937 7.78268 8.02323 8.18319 8.32773 8.39186 8.43617 9.12227 9.67227 11.13528 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009767 B = 0.004014 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.115141 B = 6974.698065 C = 9476.733537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.175 4.175 3 C 0.148 3.852 4 N -0.735 5.735 5 C 0.552 3.448 6 O -0.473 6.473 7 C -0.165 4.165 8 C -0.044 4.044 9 C -0.193 4.193 10 C 0.135 3.865 11 N -0.513 5.513 12 C 0.362 3.638 13 N -0.469 5.469 14 C 0.073 3.927 15 C 0.067 3.933 16 N -0.543 5.543 17 C 0.188 3.812 18 C -0.545 4.545 19 H 0.062 0.938 20 C 0.064 3.936 21 N -0.894 5.894 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.067 3.933 27 C 0.070 3.930 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.394 0.606 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.157 0.843 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.033 0.967 42 H 0.028 0.972 43 H 0.261 0.739 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.612 -23.503 13.649 27.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.193 4.193 3 C 0.025 3.975 4 N -0.391 5.391 5 C 0.337 3.663 6 O -0.344 6.344 7 C -0.172 4.172 8 C -0.071 4.071 9 C -0.213 4.213 10 C -0.025 4.025 11 N -0.225 5.225 12 C 0.133 3.867 13 N -0.193 5.193 14 C -0.053 4.053 15 C -0.062 4.062 16 N -0.267 5.267 17 C 0.062 3.938 18 C -0.584 4.584 19 H 0.080 0.920 20 C -0.138 4.138 21 N -0.534 5.534 22 Si 0.716 3.284 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.198 1.198 26 C -0.062 4.062 27 C -0.057 4.057 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.132 0.868 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.228 0.772 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.175 0.825 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.038 -21.842 13.005 25.914 hybrid contribution -1.429 -1.306 -0.511 2.002 sum -6.467 -23.148 12.494 27.087 Atomic orbital electron populations 1.23992 0.95818 1.02417 0.98334 1.23021 0.96223 0.98142 1.01934 1.20376 0.91802 0.95348 0.89930 1.45896 1.41956 1.20018 1.31179 1.17863 0.80560 0.82874 0.85007 1.90978 1.65318 1.33636 1.44516 1.20733 1.00604 0.97289 0.98546 1.21691 0.96477 0.96388 0.92500 1.22014 0.98423 1.00842 1.00032 1.22835 0.95469 0.88519 0.95667 1.68090 1.22526 1.27953 1.03886 1.20115 0.87607 0.90683 0.88301 1.60176 1.36993 1.02060 1.20036 1.22207 0.88238 0.99373 0.95526 1.21903 1.01487 0.88492 0.94322 1.62698 1.33832 1.03846 1.26337 1.19723 0.96396 0.88806 0.88862 1.21840 1.17202 1.05021 1.14340 0.92040 1.24951 0.96191 0.95078 0.97575 1.69955 1.39566 1.08840 1.34992 0.86656 0.82535 0.78371 0.80873 1.20715 1.21303 1.19837 1.21894 0.93637 0.95906 0.94717 1.22204 1.00231 0.86909 0.96328 0.87986 0.88060 0.86818 0.90919 0.90433 0.77190 0.84593 0.84311 0.82536 0.93539 0.91833 0.92762 0.91223 0.94856 0.95431 0.92981 0.92983 0.91229 0.91833 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 14.32 29.01 0.42 -0.66 16 2 C -0.17 -1.22 9.63 -36.03 -0.35 -1.57 16 3 C 0.15 1.48 6.11 -5.20 -0.03 1.45 16 4 N -0.74 -7.42 5.50 -62.56 -0.34 -7.76 16 5 C 0.55 7.91 7.75 -12.52 -0.10 7.82 16 6 O -0.47 -9.12 15.09 5.27 0.08 -9.04 16 7 C -0.16 -2.15 5.91 -104.65 -0.62 -2.77 16 8 C -0.04 -0.38 9.63 -38.90 -0.37 -0.75 16 9 C -0.19 -1.49 10.09 -39.50 -0.40 -1.89 16 10 C 0.13 1.34 11.16 -17.50 -0.20 1.15 16 11 N -0.51 -7.29 9.60 -12.20 -0.12 -7.41 16 12 C 0.36 5.66 5.34 -155.18 -0.83 4.83 16 13 N -0.47 -8.60 2.66 -172.82 -0.46 -9.06 16 14 C 0.07 1.35 5.49 -3.76 -0.02 1.33 16 15 C 0.07 1.45 5.24 -3.76 -0.02 1.43 16 16 N -0.54 -12.60 4.92 -235.91 -1.16 -13.76 16 17 C 0.19 5.08 5.14 -4.97 -0.03 5.05 16 18 C -0.54 -15.75 7.67 -34.44 -0.26 -16.01 16 19 H 0.06 1.82 5.81 -52.49 -0.31 1.51 16 20 C 0.06 1.87 5.46 -17.82 -0.10 1.78 16 21 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 22 Si 0.89 22.53 29.54 -169.99 -5.02 17.51 16 23 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 26 C 0.07 1.46 5.32 -3.77 -0.02 1.44 16 27 C 0.07 1.31 5.37 -3.77 -0.02 1.29 16 28 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 29 H 0.10 0.67 7.84 -52.49 -0.41 0.26 16 30 H 0.11 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.07 0.81 7.79 -51.93 -0.40 0.41 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.39 2.66 6.59 -40.82 -0.27 2.39 16 34 H 0.14 0.68 6.55 -52.48 -0.34 0.34 16 35 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 38 H 0.06 1.11 8.13 -51.93 -0.42 0.68 16 39 H 0.05 1.33 6.46 -51.93 -0.34 0.99 16 40 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.03 0.96 8.12 -51.93 -0.42 0.54 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.05 1.27 6.95 -51.93 -0.36 0.91 16 45 H 0.07 1.47 8.13 -51.93 -0.42 1.05 16 46 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 47 H 0.05 0.94 7.84 -51.93 -0.41 0.54 16 LS Contribution 382.92 15.07 5.77 5.77 Total: -1.00 -34.87 382.92 -10.50 -45.37 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.04 Total: 0.94 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -2.94 Total: 3.90 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -1.34 Total: -64.45 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.87 -10.50 -45.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.611 kcal (2) G-P(sol) polarization free energy of solvation -34.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds